HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-DEC-06 2OD0 TITLE THE CRYSTAL STRUCTURE OF GENE PRODUCT VP1028 FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN VP1028; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-105; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VP1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, VIBRIO PARAHAEMOLYTICUS, UNKNOWN FUNCTION, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 27-DEC-23 2OD0 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2OD0 1 VERSN REVDAT 2 24-FEB-09 2OD0 1 VERSN REVDAT 1 23-JAN-07 2OD0 0 JRNL AUTH R.ZHANG,M.ZHOU,S.MOY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF GENE PRODUCT VP1028 FROM VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1435 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1708 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1183 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2297 ; 1.380 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2887 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 5.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;38.826 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;14.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 8.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 246 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1813 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 345 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 348 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1205 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 825 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 884 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.128 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.322 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1259 ; 1.370 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 414 ; 0.225 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1634 ; 1.546 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 794 ; 2.738 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 663 ; 3.664 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 40 REMARK 3 RESIDUE RANGE : A 41 A 70 REMARK 3 RESIDUE RANGE : A 71 A 105 REMARK 3 RESIDUE RANGE : B 3 B 40 REMARK 3 RESIDUE RANGE : B 41 B 70 REMARK 3 RESIDUE RANGE : B 71 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7170 -6.1910 19.8220 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: -0.0114 REMARK 3 T33: -0.1265 T12: 0.0323 REMARK 3 T13: -0.0031 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4149 L22: 0.4700 REMARK 3 L33: 2.9391 L12: 0.0791 REMARK 3 L13: 0.3251 L23: 0.6724 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.0554 S13: -0.0276 REMARK 3 S21: 0.0555 S22: 0.0373 S23: -0.0464 REMARK 3 S31: 0.0528 S32: 0.0507 S33: -0.0862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 79.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M CITRATE REMARK 280 BUFFER, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.22900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.43800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.22900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.43800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED MOLA AND MOLB REMARK 300 REPRESENT THE DIMER IN THE ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 56 OH TYR A 67 4445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 33.21 -85.57 REMARK 500 SER A 88 68.67 -115.26 REMARK 500 ASP B 33 55.00 36.38 REMARK 500 SER B 88 79.54 -119.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85958.2 RELATED DB: TARGETDB DBREF 2OD0 A 1 105 UNP Q87QX1 Q87QX1_VIBPA 1 105 DBREF 2OD0 B 1 105 UNP Q87QX1 Q87QX1_VIBPA 1 105 SEQADV 2OD0 MSE A 1 UNP Q87QX1 MET 1 MODIFIED RESIDUE SEQADV 2OD0 MSE A 10 UNP Q87QX1 MET 10 MODIFIED RESIDUE SEQADV 2OD0 MSE A 24 UNP Q87QX1 MET 24 MODIFIED RESIDUE SEQADV 2OD0 MSE A 36 UNP Q87QX1 MET 36 MODIFIED RESIDUE SEQADV 2OD0 MSE B 1 UNP Q87QX1 MET 1 MODIFIED RESIDUE SEQADV 2OD0 MSE B 10 UNP Q87QX1 MET 10 MODIFIED RESIDUE SEQADV 2OD0 MSE B 24 UNP Q87QX1 MET 24 MODIFIED RESIDUE SEQADV 2OD0 MSE B 36 UNP Q87QX1 MET 36 MODIFIED RESIDUE SEQRES 1 A 105 MSE ASP LYS PRO ILE LEU LYS ASP SER MSE LYS LEU PHE SEQRES 2 A 105 GLU ALA LEU GLY THR ILE LYS SER ARG SER MSE PHE GLY SEQRES 3 A 105 GLY PHE GLY LEU PHE ALA ASP GLU THR MSE PHE ALA LEU SEQRES 4 A 105 VAL VAL ASN ASN GLN LEU HIS ILE ARG ALA ASP GLN GLN SEQRES 5 A 105 THR SER SER ASP PHE GLU THR GLN GLY LEU LYS PRO TYR SEQRES 6 A 105 VAL TYR LYS LYS ARG GLY PHE PRO VAL VAL THR LYS TYR SEQRES 7 A 105 TYR ALA ILE SER SER GLU LEU TRP GLU SER SER ASP ARG SEQRES 8 A 105 LEU ILE GLU VAL ALA LYS LYS SER LEU GLU ASN ALA LYS SEQRES 9 A 105 LEU SEQRES 1 B 105 MSE ASP LYS PRO ILE LEU LYS ASP SER MSE LYS LEU PHE SEQRES 2 B 105 GLU ALA LEU GLY THR ILE LYS SER ARG SER MSE PHE GLY SEQRES 3 B 105 GLY PHE GLY LEU PHE ALA ASP GLU THR MSE PHE ALA LEU SEQRES 4 B 105 VAL VAL ASN ASN GLN LEU HIS ILE ARG ALA ASP GLN GLN SEQRES 5 B 105 THR SER SER ASP PHE GLU THR GLN GLY LEU LYS PRO TYR SEQRES 6 B 105 VAL TYR LYS LYS ARG GLY PHE PRO VAL VAL THR LYS TYR SEQRES 7 B 105 TYR ALA ILE SER SER GLU LEU TRP GLU SER SER ASP ARG SEQRES 8 B 105 LEU ILE GLU VAL ALA LYS LYS SER LEU GLU ASN ALA LYS SEQRES 9 B 105 LEU MODRES 2OD0 MSE A 10 MET SELENOMETHIONINE MODRES 2OD0 MSE A 24 MET SELENOMETHIONINE MODRES 2OD0 MSE A 36 MET SELENOMETHIONINE MODRES 2OD0 MSE B 10 MET SELENOMETHIONINE MODRES 2OD0 MSE B 24 MET SELENOMETHIONINE MODRES 2OD0 MSE B 36 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 24 8 HET MSE A 36 8 HET MSE B 10 8 HET MSE B 24 8 HET MSE B 36 8 HET MG A 302 1 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 409 5 HET MG B 301 1 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 SO4 9(O4 S 2-) FORMUL 14 HOH *208(H2 O) HELIX 1 1 PRO A 4 GLU A 14 1 11 HELIX 2 2 ALA A 15 GLY A 17 5 3 HELIX 3 3 ASP A 50 GLN A 60 1 11 HELIX 4 4 SER A 82 SER A 88 1 7 HELIX 5 5 SER A 88 LEU A 105 1 18 HELIX 6 6 PRO B 4 PHE B 13 1 10 HELIX 7 7 GLU B 14 GLY B 17 5 4 HELIX 8 8 ASP B 50 GLN B 60 1 11 HELIX 9 9 SER B 82 GLU B 87 1 6 HELIX 10 10 SER B 88 LYS B 104 1 17 SHEET 1 A10 TYR A 78 ALA A 80 0 SHEET 2 A10 GLN A 44 ARG A 48 -1 N ILE A 47 O TYR A 79 SHEET 3 A10 THR A 35 VAL A 41 -1 N LEU A 39 O HIS A 46 SHEET 4 A10 GLY A 27 ALA A 32 -1 N LEU A 30 O ALA A 38 SHEET 5 A10 LYS A 20 MSE A 24 -1 N LYS A 20 O PHE A 31 SHEET 6 A10 ILE B 19 MSE B 24 -1 O SER B 21 N SER A 21 SHEET 7 A10 GLY B 27 ALA B 32 -1 O PHE B 31 N LYS B 20 SHEET 8 A10 THR B 35 VAL B 41 -1 O VAL B 40 N PHE B 28 SHEET 9 A10 GLN B 44 ARG B 48 -1 O HIS B 46 N LEU B 39 SHEET 10 A10 TYR B 78 ALA B 80 -1 O TYR B 79 N ILE B 47 SHEET 1 B 2 VAL A 66 LYS A 69 0 SHEET 2 B 2 PHE A 72 VAL A 75 -1 O VAL A 74 N TYR A 67 SHEET 1 C 2 VAL B 66 LYS B 69 0 SHEET 2 C 2 PHE B 72 VAL B 75 -1 O VAL B 74 N TYR B 67 LINK C SER A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N LYS A 11 1555 1555 1.33 LINK C SER A 23 N MSE A 24 1555 1555 1.34 LINK C MSE A 24 N PHE A 25 1555 1555 1.35 LINK C THR A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N PHE A 37 1555 1555 1.32 LINK C SER B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N LYS B 11 1555 1555 1.34 LINK C SER B 23 N MSE B 24 1555 1555 1.32 LINK C MSE B 24 N PHE B 25 1555 1555 1.33 LINK C THR B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N PHE B 37 1555 1555 1.32 LINK NE2 GLN A 51 MG MG A 302 1555 1555 1.90 LINK O HOH A 414 MG MG B 301 1555 1555 3.04 SITE 1 AC1 4 LYS A 7 HOH A 414 PRO B 4 LYS B 7 SITE 1 AC2 2 ARG A 48 GLN A 51 SITE 1 AC3 7 ASN B 42 GLN B 44 HIS B 46 TYR B 65 SITE 2 AC3 7 HOH B 409 HOH B 420 HOH B 488 SITE 1 AC4 3 ARG B 48 ASP B 50 GLN B 51 SITE 1 AC5 2 LYS B 69 ARG B 70 SITE 1 AC6 4 LYS A 68 LYS A 69 ARG A 70 HOH A 499 SITE 1 AC7 6 HIS A 46 TYR A 65 HOH A 411 HOH A 425 SITE 2 AC7 6 HOH A 473 HOH A 513 SITE 1 AC8 5 GLY A 17 THR A 18 THR B 59 HOH B 449 SITE 2 AC8 5 HOH B 492 SITE 1 AC9 4 LYS B 68 GLY B 71 LYS B 98 HOH B 441 SITE 1 BC1 5 ARG B 48 LYS B 77 TYR B 78 HOH B 416 SITE 2 BC1 5 HOH B 422 SITE 1 BC2 7 LYS A 7 LYS A 11 HOH A 410 HOH A 445 SITE 2 BC2 7 VAL B 41 ASN B 42 ASN B 43 CRYST1 42.458 42.876 157.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006333 0.00000