HEADER MEMBRANE PROTEIN 22-DEC-06 2ODC TITLE LEM-DOMAIN OF THE NUCLEAR ENVELOPE PROTEIN EMERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMERIN; COMPND 3 CHAIN: I; COMPND 4 FRAGMENT: RESIDUES 2-47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: NUCLEUS; SOURCE 6 GENE: EMD, EDMD, STA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INNER NUCLEAR MEMBRANE PROTEIN, LEM-DOMAIN MULTIDIMENSIONAL NMR KEYWDS 2 DIPOLAR COUPLINGS, MEMBRANE PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR G.M.CLORE,M.CAI REVDAT 5 27-DEC-23 2ODC 1 REMARK REVDAT 4 16-MAR-22 2ODC 1 REMARK SEQADV REVDAT 3 24-FEB-09 2ODC 1 VERSN REVDAT 2 22-MAY-07 2ODC 1 JRNL REVDAT 1 13-MAR-07 2ODC 0 JRNL AUTH M.CAI,Y.HUANG,J.Y.SUH,J.M.LOUIS,R.GHIRLANDO,R.CRAIGIE, JRNL AUTH 2 G.M.CLORE JRNL TITL SOLUTION NMR STRUCTURE OF THE BARRIER-TO-AUTOINTEGRATION JRNL TITL 2 FACTOR-EMERIN COMPLEX. JRNL REF J.BIOL.CHEM. V. 282 14525 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17355960 JRNL DOI 10.1074/JBC.M700576200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE CALCULATED BY REMARK 3 SIMULATED ANNEALING IN TORSION ANGLE SPACE. THE TARGET FUNCTION REMARK 3 COMPRISES TERMS FOR THE THE NOE RESTRAINTS, TORSION ANGLE REMARK 3 RESTRAINTS, CARBON CHEMICAL SHIFT RESTRAINTS, THE DIPOLAR REMARK 3 COUPLING RESTRAINTS, THE RADIUS OF GYRATION, A QUARTIC VAN DER REMARK 3 WAALS REPULSION TERM, A MULTIDIMENSIONAL TORSION ANGLE DATABASE REMARK 3 POTENTIAL OF MEAN FORCE, AND A MULTIDIMENSIONAL HYDROGEN BONDING REMARK 4 REMARK 4 2ODC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 7 REMARK 7 IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE REMARK 7 RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED REMARK 7 ANNEALING STRUCTURES AND THE MEAN COORDINATE REMARK 7 POSITIONS. REMARK 7 STRUCTURAL STATISTICS: REMARK 7 --------------------------------------------------------- REMARK 7 DEVIATIONS FROM IDEALIZED GEOMETRY: REMARK 7 BONDS 0.004 A REMARK 7 ANGLES 0.39 DEG REMARK 7 IMPROPERS 0.58 DEG REMARK 7 RMS DEVIATIONS FROM EXPT RESTRAINTS REMARK 7 NOES (489) 0.016 A REMARK 7 TORSION ANGLES (129) 0.32 DEG REMARK 7 13C CA CHEMICAL SHIFTS (47) 1.27 PPM REMARK 7 13C CB CHEMICAL SHIFTS (45) 0.70 PPM REMARK 7 DIPOLAR COUPLING R-FACTORS (CLORE AND GARRETT (1999) REMARK 7 J. AM. CHEM. SOC. 121, 9008-9012): REMARK 7 1DNH (38) 2.3% REMARK 7 1DNC' (36) 11.5% REMARK 7 2DHNC' (36) 12.8% REMARK 7 % RESIDUES IN MOST FAVORABLE REMARK 7 REGION OF RAMACHADRAN MAP 99.5% REMARK 7 -------------------------------------------------------- REMARK 7 COORDINATE PRECISION (RESIDUES 2-46): REMARK 7 BACKBONE: 0.20(+/-0.06) A REMARK 7 ALL HEAVY ATOMS: 0.87(+/-0.09) A REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040992. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.00 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 50 MM POTASSIUM PHOSPHATE REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DOUBLE AND TRIPLE RESONANCE FOR REMARK 210 ASSIGNMENT OF PROTEIN; REMARK 210 QUANTITATIVE J CORRELATION FOR REMARK 210 COUPLING CONSTANTS; 3D SEPARATED REMARK 210 NOE EXPERIMENTS; 2D REMARK 210 HETERONUCLEAR FOR DIPOLAR REMARK 210 COUPLING MEASUREMENTS IN LIQUID REMARK 210 CRYSTALLINE MEDIUM OF PHAGE PF1 REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH REMARK 210 METHOD USED : RESTRAINED SIMULATED ANNEALING REMARK 210 IN TORION ANGLE SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 180 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : RESTRAINED REGULARIZED MEAN REMARK 210 STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE I 39 HG1 THR I 43 1.48 REMARK 500 O VAL I 27 H ARG I 31 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ODG RELATED DB: PDB REMARK 900 COMPLEX OF BARRIER-TO-AUTHOINTEGRATION FACTOR AND LEM-DOMAIN OF REMARK 900 EMERIN DBREF 2ODC I 2 47 UNP P50402 EMD_HUMAN 2 47 SEQADV 2ODC HIS I 1 UNP P50402 CLONING ARTIFACT SEQRES 1 I 47 HIS ASP ASN TYR ALA ASP LEU SER ASP THR GLU LEU THR SEQRES 2 I 47 THR LEU LEU ARG ARG TYR ASN ILE PRO HIS GLY PRO VAL SEQRES 3 I 47 VAL GLY SER THR ARG ARG LEU TYR GLU LYS LYS ILE PHE SEQRES 4 I 47 GLU TYR GLU THR GLN ARG ARG ARG HELIX 1 1 ASP I 2 LEU I 7 5 6 HELIX 2 2 SER I 8 TYR I 19 1 12 HELIX 3 3 VAL I 27 ARG I 47 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000