data_2OEU # _entry.id 2OEU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OEU pdb_00002oeu 10.2210/pdb2oeu/pdb NDB UR0108 ? ? RCSB RCSB041046 ? ? WWPDB D_1000041046 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2goz _pdbx_database_related.details 'same thing without Mn(II)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OEU _pdbx_database_status.recvd_initial_deposition_date 2007-01-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martick, M.' 1 'Scott, W.G.' 2 # _citation.id primary _citation.title 'Solvent structure and hammerhead ribozyme catalysis.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 15 _citation.page_first 332 _citation.page_last 342 _citation.year 2008 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18420140 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2008.03.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martick, M.' 1 ? primary 'Lee, T.S.' 2 ? primary 'York, D.M.' 3 ? primary 'Scott, W.G.' 4 ? # _cell.entry_id 2OEU _cell.length_a 50.312 _cell.length_b 68.981 _cell.length_c 60.443 _cell.angle_alpha 90.00 _cell.angle_beta 112.62 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OEU _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Hammerhead Ribozyme' 14021.306 1 ? ? ? ? 2 polymer syn "5'-R(*GP*GP*CP*GP*UP*(OMC)P*CP*UP*GP*GP*(5BU)P*AP*UP*CP*CP*AP*AP*UP*CP*(DC))-3'" 6412.712 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 5 ? ? ? ? 4 water nat water 18.015 195 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GTP)GAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCC' GGAUGUACUACCAGCUGAUGAGUCCCAAAUAGGACGAAACGCC A ? 2 polyribonucleotide no yes 'GGCGU(OMC)CUGG(5BU)AUCCAAUC(DC)' GGCGUCCUGGUAUCCAAUCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 U n 1 5 G n 1 6 U n 1 7 A n 1 8 C n 1 9 U n 1 10 A n 1 11 C n 1 12 C n 1 13 A n 1 14 G n 1 15 C n 1 16 U n 1 17 G n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 G n 1 23 U n 1 24 C n 1 25 C n 1 26 C n 1 27 A n 1 28 A n 1 29 A n 1 30 U n 1 31 A n 1 32 G n 1 33 G n 1 34 A n 1 35 C n 1 36 G n 1 37 A n 1 38 A n 1 39 A n 1 40 C n 1 41 G n 1 42 C n 1 43 C n 2 1 G n 2 2 G n 2 3 C n 2 4 G n 2 5 U n 2 6 OMC n 2 7 C n 2 8 U n 2 9 G n 2 10 G n 2 11 5BU n 2 12 A n 2 13 U n 2 14 C n 2 15 C n 2 16 A n 2 17 A n 2 18 U n 2 19 C n 2 20 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'enzyme strand was obtained by T7 RNA transcription' 2 1 sample ? ? ? ? ? 'substrate strand was obtained by Solid-phase chemical synthesis' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2OEU 2OEU ? ? ? 2 2 PDB 2OEU 2OEU ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OEU A 1 ? 43 ? 2OEU 1 ? 43 ? 1 43 2 2 2OEU B 1 ? 20 ? 2OEU 1 ? 20 ? 1 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2OEU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 301 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;THE ENZYME AND SUBSTRATE WERE MIXED IN EQUIMOLAR AMOUNTS IN A SOLUTION CONTAINING 50 MM MES PH 5.5, 1.5 MM EDTA. THE COMPLEX WAS FORMED BY INCUBATING THE MIXTURE AT 95C FOR 2 MIN., THEN AT 65C FOR 2 MIN., AND FINALLY AT 27C FOR 5 MIN. 1 MM MGCL2 WAS INCLUDED IN THE MIXTURE BEFORE THE FINAL INCUBATION STEP. A 10 MG/ML CONCENTRATION OF RNA WAS USED FOR THE CRYSTALLIZATION EXPERIMENTS. THE RESERVOIR SOLUTION CONTAINED 0.5M (NH4)2SO4, 100 MM MES PH 6.5, AND 35% PEG 3350. AFTER MIXING THE RESERVOIR SOLUTION, THE SALT AND PEG PHASES WERE ALLOWED TO SEPARATE, AND ONLY THE SALT PHASE WAS USED FOR THE DROPS. THE CRYSTALS GREW IN HANGING DROPS OF 2 MICROLITERS AFTER 12 MONTHS OF INCUBATION AT 28C. THE CRYSTALS WERE WASHED IN THE SALT PHASE OF THE RESERVOIR SOLUTION PRIOR TO CRYO-FREEZING, VAPOR DIFFUSION, HANGING DROP, temperature 301K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES ? ? ? 1 2 1 EDTA ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 PEG ? ? ? 1 5 1 '(NH4)2SO4' ? ? ? 1 6 1 H2O ? ? ? 1 7 1 MES ? ? ? 1 8 2 EDTA ? ? ? 1 9 2 MGCL2 ? ? ? 1 10 2 PEG ? ? ? 1 11 2 '(NH4)2SO4' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.37756 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.37756 # _reflns.entry_id 2OEU _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 38.52 _reflns.number_all ? _reflns.number_obs 12527 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 96.3 _reflns_shell.Rmerge_I_obs 0.113 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.4 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1814 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OEU _refine.ls_number_reflns_obs 11277 _refine.ls_number_reflns_all 11277 _refine.pdbx_ls_sigma_I 0.000 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 55.80 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 96.55 _refine.ls_R_factor_obs 0.17143 _refine.ls_R_factor_all 0.17143 _refine.ls_R_factor_R_work 0.16586 _refine.ls_R_factor_R_free 0.22087 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1234 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.B_iso_mean 46.082 _refine.aniso_B[1][1] -0.47 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.69 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -1.51 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Simulated annealing and TLS refinement in phenix followed by refmac.' _refine.pdbx_starting_model 2goz _refine.pdbx_method_to_determine_struct 'same cell as 2goz' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.192 _refine.pdbx_overall_ESU_R_Free 0.171 _refine.overall_SU_ML 0.125 _refine.overall_SU_B 8.559 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OEU _refine_analyze.Luzzati_coordinate_error_obs 0.192 _refine_analyze.Luzzati_sigma_a_obs 0.125 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.171 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1349 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 195 _refine_hist.number_atoms_total 1549 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 55.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 1511 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.728 3.000 ? 2339 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 649 'X-RAY DIFFRACTION' ? r_nbd_refined 0.168 0.200 ? 520 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.280 0.200 ? 918 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.159 0.200 ? 173 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.036 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.126 0.200 ? 34 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.173 0.200 ? 26 'X-RAY DIFFRACTION' ? r_scbond_it 1.440 3.000 ? 2120 'X-RAY DIFFRACTION' ? r_scangle_it 1.933 4.500 ? 2339 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 822 _refine_ls_shell.R_factor_R_work 0.187 _refine_ls_shell.percent_reflns_obs 96.02 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 94 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 916 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OEU _struct.title 'Full-length hammerhead ribozyme with Mn(II) bound' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OEU _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBOZYME, HAMMERHEAD RNA, STEM-LOOP INTERACTION, URIDINE TURN, A-FORM HELIX, Manganese, Mn, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? B U 5 "O3'" ? ? ? 1_555 B OMC 6 P ? ? B U 5 B OMC 6 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? B OMC 6 "O3'" ? ? ? 1_555 B C 7 P ? ? B OMC 6 B C 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? B G 10 "O3'" ? ? ? 1_555 B 5BU 11 P ? ? B G 10 B 5BU 11 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale5 covale both ? B 5BU 11 "O3'" ? ? ? 1_555 B A 12 P ? ? B 5BU 11 B A 12 1_555 ? ? ? ? ? ? ? 1.591 ? ? metalc1 metalc ? ? A GTP 1 O2B ? ? ? 1_555 D MN . MN ? ? A GTP 1 A MN 401 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc2 metalc ? ? A GTP 1 N7 ? ? ? 1_555 D MN . MN ? ? A GTP 1 A MN 401 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc3 metalc ? ? A A 21 OP2 ? ? ? 1_555 C MN . MN ? ? A A 21 A MN 301 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc4 metalc ? ? A G 22 N7 ? ? ? 1_555 C MN . MN ? ? A G 22 A MN 301 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc5 metalc ? ? A A 27 N7 ? ? ? 1_555 F MN . MN ? ? A A 27 A MN 601 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc6 metalc ? ? A A 38 OP2 ? ? ? 1_555 E MN . MN ? ? A A 38 A MN 501 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc7 metalc ? ? C MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 301 A HOH 702 1_555 ? ? ? ? ? ? ? 2.243 ? ? metalc8 metalc ? ? C MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 301 A HOH 703 1_555 ? ? ? ? ? ? ? 2.018 ? ? metalc9 metalc ? ? C MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 301 A HOH 704 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc10 metalc ? ? C MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 301 A HOH 705 1_555 ? ? ? ? ? ? ? 1.704 ? ? metalc11 metalc ? ? D MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 401 A HOH 706 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc12 metalc ? ? D MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 401 A HOH 707 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc13 metalc ? ? D MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 401 A HOH 708 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc14 metalc ? ? D MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 401 A HOH 709 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc15 metalc ? ? E MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 501 A HOH 710 1_555 ? ? ? ? ? ? ? 2.499 ? ? metalc16 metalc ? ? E MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 501 A HOH 711 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc17 metalc ? ? E MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 501 A HOH 712 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc18 metalc ? ? E MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 501 A HOH 713 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc19 metalc ? ? E MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 501 A HOH 714 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc20 metalc ? ? F MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 601 A HOH 715 1_555 ? ? ? ? ? ? ? 2.686 ? ? metalc21 metalc ? ? F MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 601 A HOH 716 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc22 metalc ? ? F MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 601 A HOH 717 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc23 metalc ? ? G MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 701 A HOH 718 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc24 metalc ? ? G MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 701 A HOH 719 1_555 ? ? ? ? ? ? ? 2.746 ? ? metalc25 metalc ? ? G MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 701 A HOH 720 1_555 ? ? ? ? ? ? ? 2.224 ? ? metalc26 metalc ? ? G MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 701 A HOH 721 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc27 metalc ? ? G MN . MN ? ? ? 1_555 H HOH . O ? ? A MN 701 A HOH 722 1_555 ? ? ? ? ? ? ? 2.338 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 B DC 20 N3 ? ? A GTP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 B DC 20 O2 ? ? A GTP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 B DC 20 N4 ? ? A GTP 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 2 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 18 N3 ? ? A A 3 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 18 O4 ? ? A A 3 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B C 15 N4 ? ? A U 4 B C 15 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 B A 17 N6 ? ? A U 4 B A 17 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 5 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 28 N7 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 A A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 A C 26 O2 ? ? A C 8 A C 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? A C 8 O2 ? ? ? 1_555 A C 26 N4 ? ? A C 8 A C 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog18 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 9 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 9 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N1 ? ? ? 1_555 B 5BU 11 N3 ? ? A A 10 B 5BU 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 10 N6 ? ? ? 1_555 B 5BU 11 O4 ? ? A A 10 B 5BU 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 11 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 12 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 13 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 13 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 13 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 13 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 14 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 15 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 38 N1 ? ? A G 17 A A 38 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A A 21 N6 ? ? ? 1_555 A G 36 N3 ? ? A A 21 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? A A 21 N7 ? ? ? 1_555 A G 36 N2 ? ? A A 21 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 22 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 23 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 23 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 25 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 31 N6 ? ? ? 1_555 B U 13 O2 ? ? A A 31 B U 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A A 31 N7 ? ? ? 1_555 B U 13 N3 ? ? A A 31 B U 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog52 hydrog ? ? A A 37 N6 ? ? ? 1_555 B OMC 6 O2 ? ? A A 37 B OMC 6 1_555 ? ? ? ? ? ? 'A-OMC MISPAIR' ? ? ? hydrog53 hydrog ? ? A A 38 N6 ? ? ? 1_555 B OMC 6 N3 ? ? A A 38 B OMC 6 1_555 ? ? ? ? ? ? 'A-OMC MISPAIR' ? ? ? hydrog54 hydrog ? ? A A 39 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 39 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 39 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 39 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 40 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 40 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 40 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 40 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 41 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 42 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 42 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 42 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 42 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 43 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 43 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 43 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 43 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 301 ? 6 'BINDING SITE FOR RESIDUE MN A 301' AC2 Software A MN 401 ? 5 'BINDING SITE FOR RESIDUE MN A 401' AC3 Software A MN 501 ? 6 'BINDING SITE FOR RESIDUE MN A 501' AC4 Software A MN 601 ? 4 'BINDING SITE FOR RESIDUE MN A 601' AC5 Software A MN 701 ? 5 'BINDING SITE FOR RESIDUE MN A 701' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 21 ? A A 21 . ? 1_555 ? 2 AC1 6 G A 22 ? G A 22 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 702 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 703 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 704 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 705 . ? 1_555 ? 7 AC2 5 GTP A 1 ? GTP A 1 . ? 1_555 ? 8 AC2 5 HOH H . ? HOH A 706 . ? 1_555 ? 9 AC2 5 HOH H . ? HOH A 707 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 708 . ? 1_555 ? 11 AC2 5 HOH H . ? HOH A 709 . ? 1_555 ? 12 AC3 6 A A 38 ? A A 38 . ? 1_555 ? 13 AC3 6 HOH H . ? HOH A 710 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH A 711 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH A 712 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 713 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH A 714 . ? 1_555 ? 18 AC4 4 A A 27 ? A A 27 . ? 1_555 ? 19 AC4 4 HOH H . ? HOH A 715 . ? 1_555 ? 20 AC4 4 HOH H . ? HOH A 716 . ? 1_555 ? 21 AC4 4 HOH H . ? HOH A 717 . ? 1_555 ? 22 AC5 5 HOH H . ? HOH A 718 . ? 1_555 ? 23 AC5 5 HOH H . ? HOH A 719 . ? 1_555 ? 24 AC5 5 HOH H . ? HOH A 720 . ? 1_555 ? 25 AC5 5 HOH H . ? HOH A 721 . ? 1_555 ? 26 AC5 5 HOH H . ? HOH A 722 . ? 1_555 ? # _database_PDB_matrix.entry_id 2OEU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2OEU _atom_sites.fract_transf_matrix[1][1] 0.019876 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008282 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014497 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017923 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MN N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 U 30 30 30 U U A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 U 5 5 5 U U B . n B 2 6 OMC 6 6 6 OMC OMC B . n B 2 7 C 7 7 7 C C B . n B 2 8 U 8 8 8 U U B . n B 2 9 G 9 9 9 G G B . n B 2 10 G 10 10 10 G G B . n B 2 11 5BU 11 11 11 5BU 5BU B . n B 2 12 A 12 12 12 A A B . n B 2 13 U 13 13 13 U U B . n B 2 14 C 14 14 14 C C B . n B 2 15 C 15 15 15 C C B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 U 18 18 18 U U B . n B 2 19 C 19 19 19 C C B . n B 2 20 DC 20 20 20 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN 1 301 301 MN MN A . D 3 MN 1 401 401 MN MN A . E 3 MN 1 501 501 MN MN A . F 3 MN 1 601 601 MN MN A . G 3 MN 1 701 701 MN MN A . H 4 HOH 1 702 302 HOH HOH A . H 4 HOH 2 703 303 HOH HOH A . H 4 HOH 3 704 304 HOH HOH A . H 4 HOH 4 705 305 HOH HOH A . H 4 HOH 5 706 402 HOH HOH A . H 4 HOH 6 707 403 HOH HOH A . H 4 HOH 7 708 404 HOH HOH A . H 4 HOH 8 709 405 HOH HOH A . H 4 HOH 9 710 502 HOH HOH A . H 4 HOH 10 711 503 HOH HOH A . H 4 HOH 11 712 504 HOH HOH A . H 4 HOH 12 713 505 HOH HOH A . H 4 HOH 13 714 506 HOH HOH A . H 4 HOH 14 715 602 HOH HOH A . H 4 HOH 15 716 603 HOH HOH A . H 4 HOH 16 717 604 HOH HOH A . H 4 HOH 17 718 702 HOH HOH A . H 4 HOH 18 719 703 HOH HOH A . H 4 HOH 19 720 704 HOH HOH A . H 4 HOH 20 721 705 HOH HOH A . H 4 HOH 21 722 706 HOH HOH A . H 4 HOH 22 723 3 HOH HOH A . H 4 HOH 23 724 4 HOH HOH A . H 4 HOH 24 725 5 HOH HOH A . H 4 HOH 25 726 8 HOH HOH A . H 4 HOH 26 727 12 HOH HOH A . H 4 HOH 27 728 13 HOH HOH A . H 4 HOH 28 729 14 HOH HOH A . H 4 HOH 29 730 17 HOH HOH A . H 4 HOH 30 731 20 HOH HOH A . H 4 HOH 31 732 24 HOH HOH A . H 4 HOH 32 733 26 HOH HOH A . H 4 HOH 33 734 28 HOH HOH A . H 4 HOH 34 735 29 HOH HOH A . H 4 HOH 35 736 30 HOH HOH A . H 4 HOH 36 737 35 HOH HOH A . H 4 HOH 37 738 39 HOH HOH A . H 4 HOH 38 739 40 HOH HOH A . H 4 HOH 39 740 41 HOH HOH A . H 4 HOH 40 741 46 HOH HOH A . H 4 HOH 41 742 48 HOH HOH A . H 4 HOH 42 743 49 HOH HOH A . H 4 HOH 43 744 52 HOH HOH A . H 4 HOH 44 745 56 HOH HOH A . H 4 HOH 45 746 60 HOH HOH A . H 4 HOH 46 747 63 HOH HOH A . H 4 HOH 47 748 64 HOH HOH A . H 4 HOH 48 749 68 HOH HOH A . H 4 HOH 49 750 69 HOH HOH A . H 4 HOH 50 751 71 HOH HOH A . H 4 HOH 51 752 79 HOH HOH A . H 4 HOH 52 753 80 HOH HOH A . H 4 HOH 53 754 81 HOH HOH A . H 4 HOH 54 755 83 HOH HOH A . H 4 HOH 55 756 85 HOH HOH A . H 4 HOH 56 757 87 HOH HOH A . H 4 HOH 57 758 88 HOH HOH A . H 4 HOH 58 759 91 HOH HOH A . H 4 HOH 59 760 94 HOH HOH A . H 4 HOH 60 761 99 HOH HOH A . H 4 HOH 61 762 106 HOH HOH A . H 4 HOH 62 763 109 HOH HOH A . H 4 HOH 63 764 113 HOH HOH A . H 4 HOH 64 765 115 HOH HOH A . H 4 HOH 65 766 119 HOH HOH A . H 4 HOH 66 767 128 HOH HOH A . H 4 HOH 67 768 131 HOH HOH A . H 4 HOH 68 769 132 HOH HOH A . H 4 HOH 69 770 134 HOH HOH A . H 4 HOH 70 771 135 HOH HOH A . H 4 HOH 71 772 138 HOH HOH A . H 4 HOH 72 773 140 HOH HOH A . H 4 HOH 73 774 147 HOH HOH A . H 4 HOH 74 775 152 HOH HOH A . H 4 HOH 75 776 157 HOH HOH A . H 4 HOH 76 777 159 HOH HOH A . H 4 HOH 77 778 163 HOH HOH A . H 4 HOH 78 779 168 HOH HOH A . H 4 HOH 79 780 169 HOH HOH A . H 4 HOH 80 781 171 HOH HOH A . H 4 HOH 81 782 172 HOH HOH A . H 4 HOH 82 783 178 HOH HOH A . H 4 HOH 83 784 181 HOH HOH A . H 4 HOH 84 785 182 HOH HOH A . H 4 HOH 85 786 183 HOH HOH A . H 4 HOH 86 787 184 HOH HOH A . H 4 HOH 87 788 185 HOH HOH A . H 4 HOH 88 789 191 HOH HOH A . H 4 HOH 89 790 193 HOH HOH A . H 4 HOH 90 791 198 HOH HOH A . H 4 HOH 91 792 211 HOH HOH A . H 4 HOH 92 793 212 HOH HOH A . H 4 HOH 93 794 215 HOH HOH A . H 4 HOH 94 795 217 HOH HOH A . H 4 HOH 95 796 220 HOH HOH A . H 4 HOH 96 797 223 HOH HOH A . H 4 HOH 97 798 225 HOH HOH A . H 4 HOH 98 799 227 HOH HOH A . H 4 HOH 99 800 228 HOH HOH A . H 4 HOH 100 801 229 HOH HOH A . H 4 HOH 101 802 235 HOH HOH A . H 4 HOH 102 803 237 HOH HOH A . H 4 HOH 103 804 240 HOH HOH A . H 4 HOH 104 805 246 HOH HOH A . H 4 HOH 105 806 248 HOH HOH A . H 4 HOH 106 807 249 HOH HOH A . H 4 HOH 107 808 254 HOH HOH A . H 4 HOH 108 809 255 HOH HOH A . H 4 HOH 109 810 258 HOH HOH A . H 4 HOH 110 811 262 HOH HOH A . H 4 HOH 111 812 264 HOH HOH A . H 4 HOH 112 813 267 HOH HOH A . H 4 HOH 113 814 268 HOH HOH A . H 4 HOH 114 815 272 HOH HOH A . H 4 HOH 115 816 273 HOH HOH A . H 4 HOH 116 817 281 HOH HOH A . H 4 HOH 117 818 286 HOH HOH A . I 4 HOH 1 21 1 HOH HOH B . I 4 HOH 2 22 2 HOH HOH B . I 4 HOH 3 23 6 HOH HOH B . I 4 HOH 4 24 7 HOH HOH B . I 4 HOH 5 25 9 HOH HOH B . I 4 HOH 6 26 10 HOH HOH B . I 4 HOH 7 27 16 HOH HOH B . I 4 HOH 8 28 18 HOH HOH B . I 4 HOH 9 29 19 HOH HOH B . I 4 HOH 10 30 22 HOH HOH B . I 4 HOH 11 31 25 HOH HOH B . I 4 HOH 12 32 27 HOH HOH B . I 4 HOH 13 33 32 HOH HOH B . I 4 HOH 14 34 33 HOH HOH B . I 4 HOH 15 35 36 HOH HOH B . I 4 HOH 16 36 38 HOH HOH B . I 4 HOH 17 37 42 HOH HOH B . I 4 HOH 18 38 44 HOH HOH B . I 4 HOH 19 39 45 HOH HOH B . I 4 HOH 20 40 47 HOH HOH B . I 4 HOH 21 41 50 HOH HOH B . I 4 HOH 22 42 55 HOH HOH B . I 4 HOH 23 43 58 HOH HOH B . I 4 HOH 24 44 59 HOH HOH B . I 4 HOH 25 45 62 HOH HOH B . I 4 HOH 26 46 65 HOH HOH B . I 4 HOH 27 47 67 HOH HOH B . I 4 HOH 28 48 70 HOH HOH B . I 4 HOH 29 49 72 HOH HOH B . I 4 HOH 30 50 73 HOH HOH B . I 4 HOH 31 51 74 HOH HOH B . I 4 HOH 32 52 77 HOH HOH B . I 4 HOH 33 53 78 HOH HOH B . I 4 HOH 34 54 82 HOH HOH B . I 4 HOH 35 55 86 HOH HOH B . I 4 HOH 36 56 89 HOH HOH B . I 4 HOH 37 57 90 HOH HOH B . I 4 HOH 38 58 95 HOH HOH B . I 4 HOH 39 59 96 HOH HOH B . I 4 HOH 40 60 97 HOH HOH B . I 4 HOH 41 61 98 HOH HOH B . I 4 HOH 42 62 101 HOH HOH B . I 4 HOH 43 63 103 HOH HOH B . I 4 HOH 44 64 105 HOH HOH B . I 4 HOH 45 65 108 HOH HOH B . I 4 HOH 46 66 110 HOH HOH B . I 4 HOH 47 67 112 HOH HOH B . I 4 HOH 48 68 123 HOH HOH B . I 4 HOH 49 69 125 HOH HOH B . I 4 HOH 50 70 126 HOH HOH B . I 4 HOH 51 71 136 HOH HOH B . I 4 HOH 52 72 141 HOH HOH B . I 4 HOH 53 73 146 HOH HOH B . I 4 HOH 54 74 148 HOH HOH B . I 4 HOH 55 75 149 HOH HOH B . I 4 HOH 56 76 160 HOH HOH B . I 4 HOH 57 77 174 HOH HOH B . I 4 HOH 58 78 175 HOH HOH B . I 4 HOH 59 79 179 HOH HOH B . I 4 HOH 60 80 194 HOH HOH B . I 4 HOH 61 81 195 HOH HOH B . I 4 HOH 62 82 196 HOH HOH B . I 4 HOH 63 83 205 HOH HOH B . I 4 HOH 64 84 214 HOH HOH B . I 4 HOH 65 85 216 HOH HOH B . I 4 HOH 66 86 219 HOH HOH B . I 4 HOH 67 87 226 HOH HOH B . I 4 HOH 68 88 231 HOH HOH B . I 4 HOH 69 89 233 HOH HOH B . I 4 HOH 70 90 234 HOH HOH B . I 4 HOH 71 91 236 HOH HOH B . I 4 HOH 72 92 238 HOH HOH B . I 4 HOH 73 93 242 HOH HOH B . I 4 HOH 74 94 251 HOH HOH B . I 4 HOH 75 95 256 HOH HOH B . I 4 HOH 76 96 259 HOH HOH B . I 4 HOH 77 97 260 HOH HOH B . I 4 HOH 78 98 270 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 B OMC 6 B OMC 6 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 3 B 5BU 11 B 5BU 11 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2B ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 N7 ? A GTP 1 ? A GTP 1 ? 1_555 92.2 ? 2 O2B ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 706 ? 1_555 86.1 ? 3 N7 ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 706 ? 1_555 94.1 ? 4 O2B ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 707 ? 1_555 103.8 ? 5 N7 ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 707 ? 1_555 90.5 ? 6 O ? H HOH . ? A HOH 706 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 707 ? 1_555 168.9 ? 7 O2B ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 708 ? 1_555 174.4 ? 8 N7 ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 708 ? 1_555 89.3 ? 9 O ? H HOH . ? A HOH 706 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 708 ? 1_555 88.4 ? 10 O ? H HOH . ? A HOH 707 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 708 ? 1_555 81.6 ? 11 O2B ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 709 ? 1_555 94.8 ? 12 N7 ? A GTP 1 ? A GTP 1 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 709 ? 1_555 171.0 ? 13 O ? H HOH . ? A HOH 706 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 709 ? 1_555 92.0 ? 14 O ? H HOH . ? A HOH 707 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 709 ? 1_555 82.3 ? 15 O ? H HOH . ? A HOH 708 ? 1_555 MN ? D MN . ? A MN 401 ? 1_555 O ? H HOH . ? A HOH 709 ? 1_555 84.3 ? 16 OP2 ? A A 21 ? A A 21 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 N7 ? A G 22 ? A G 22 ? 1_555 102.4 ? 17 OP2 ? A A 21 ? A A 21 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 702 ? 1_555 76.8 ? 18 N7 ? A G 22 ? A G 22 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 702 ? 1_555 94.0 ? 19 OP2 ? A A 21 ? A A 21 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 703 ? 1_555 106.2 ? 20 N7 ? A G 22 ? A G 22 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 703 ? 1_555 90.0 ? 21 O ? H HOH . ? A HOH 702 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 703 ? 1_555 174.3 ? 22 OP2 ? A A 21 ? A A 21 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 704 ? 1_555 166.6 ? 23 N7 ? A G 22 ? A G 22 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 704 ? 1_555 89.2 ? 24 O ? H HOH . ? A HOH 702 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 704 ? 1_555 96.1 ? 25 O ? H HOH . ? A HOH 703 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 704 ? 1_555 80.0 ? 26 OP2 ? A A 21 ? A A 21 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 705 ? 1_555 80.6 ? 27 N7 ? A G 22 ? A G 22 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 705 ? 1_555 175.9 ? 28 O ? H HOH . ? A HOH 702 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 705 ? 1_555 83.8 ? 29 O ? H HOH . ? A HOH 703 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 705 ? 1_555 91.9 ? 30 O ? H HOH . ? A HOH 704 ? 1_555 MN ? C MN . ? A MN 301 ? 1_555 O ? H HOH . ? A HOH 705 ? 1_555 87.5 ? 31 N7 ? A A 27 ? A A 27 ? 1_555 MN ? F MN . ? A MN 601 ? 1_555 O ? H HOH . ? A HOH 715 ? 1_555 104.5 ? 32 N7 ? A A 27 ? A A 27 ? 1_555 MN ? F MN . ? A MN 601 ? 1_555 O ? H HOH . ? A HOH 716 ? 1_555 100.5 ? 33 O ? H HOH . ? A HOH 715 ? 1_555 MN ? F MN . ? A MN 601 ? 1_555 O ? H HOH . ? A HOH 716 ? 1_555 97.7 ? 34 N7 ? A A 27 ? A A 27 ? 1_555 MN ? F MN . ? A MN 601 ? 1_555 O ? H HOH . ? A HOH 717 ? 1_555 95.9 ? 35 O ? H HOH . ? A HOH 715 ? 1_555 MN ? F MN . ? A MN 601 ? 1_555 O ? H HOH . ? A HOH 717 ? 1_555 61.4 ? 36 O ? H HOH . ? A HOH 716 ? 1_555 MN ? F MN . ? A MN 601 ? 1_555 O ? H HOH . ? A HOH 717 ? 1_555 156.3 ? 37 OP2 ? A A 38 ? A A 38 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 710 ? 1_555 81.4 ? 38 OP2 ? A A 38 ? A A 38 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 711 ? 1_555 96.1 ? 39 O ? H HOH . ? A HOH 710 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 711 ? 1_555 101.9 ? 40 OP2 ? A A 38 ? A A 38 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 712 ? 1_555 92.8 ? 41 O ? H HOH . ? A HOH 710 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 712 ? 1_555 78.7 ? 42 O ? H HOH . ? A HOH 711 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 712 ? 1_555 171.1 ? 43 OP2 ? A A 38 ? A A 38 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 713 ? 1_555 94.8 ? 44 O ? H HOH . ? A HOH 710 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 713 ? 1_555 174.5 ? 45 O ? H HOH . ? A HOH 711 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 713 ? 1_555 82.4 ? 46 O ? H HOH . ? A HOH 712 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 713 ? 1_555 97.6 ? 47 OP2 ? A A 38 ? A A 38 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 714 ? 1_555 176.0 ? 48 O ? H HOH . ? A HOH 710 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 714 ? 1_555 99.6 ? 49 O ? H HOH . ? A HOH 711 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 714 ? 1_555 87.4 ? 50 O ? H HOH . ? A HOH 712 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 714 ? 1_555 83.7 ? 51 O ? H HOH . ? A HOH 713 ? 1_555 MN ? E MN . ? A MN 501 ? 1_555 O ? H HOH . ? A HOH 714 ? 1_555 83.9 ? 52 O ? H HOH . ? A HOH 718 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 719 ? 1_555 84.1 ? 53 O ? H HOH . ? A HOH 718 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 720 ? 1_555 170.5 ? 54 O ? H HOH . ? A HOH 719 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 720 ? 1_555 96.6 ? 55 O ? H HOH . ? A HOH 718 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 721 ? 1_555 95.7 ? 56 O ? H HOH . ? A HOH 719 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 721 ? 1_555 93.5 ? 57 O ? H HOH . ? A HOH 720 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 721 ? 1_555 93.7 ? 58 O ? H HOH . ? A HOH 718 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 722 ? 1_555 93.2 ? 59 O ? H HOH . ? A HOH 719 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 722 ? 1_555 165.7 ? 60 O ? H HOH . ? A HOH 720 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 722 ? 1_555 83.8 ? 61 O ? H HOH . ? A HOH 721 ? 1_555 MN ? G MN . ? A MN 701 ? 1_555 O ? H HOH . ? A HOH 722 ? 1_555 100.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-20 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0021 ? 1 ADSC 'data collection' QUANTUM ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 Coot 'model building' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 84 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 84 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_354 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 114.51 108.50 6.01 0.70 N 2 1 "O4'" A U 19 ? ? "C1'" A U 19 ? ? N1 A U 19 ? ? 102.77 108.20 -5.43 0.80 N 3 1 "O4'" A C 26 ? ? "C1'" A C 26 ? ? N1 A C 26 ? ? 112.71 108.50 4.21 0.70 N 4 1 "C3'" A A 28 ? ? "O3'" A A 28 ? ? P A A 29 ? ? 130.82 119.70 11.12 1.20 Y 5 1 "C4'" A G 32 ? ? "C3'" A G 32 ? ? "C2'" A G 32 ? ? 96.32 102.60 -6.28 1.00 N 6 1 "O4'" A C 35 ? ? "C1'" A C 35 ? ? N1 A C 35 ? ? 113.50 108.50 5.00 0.70 N 7 1 "O4'" A C 43 ? ? "C1'" A C 43 ? ? N1 A C 43 ? ? 113.44 108.50 4.94 0.70 N 8 1 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.20 108.50 5.70 0.70 N 9 1 "O4'" B C 15 ? ? "C1'" B C 15 ? ? N1 B C 15 ? ? 113.46 108.50 4.96 0.70 N 10 1 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 113.21 108.50 4.71 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 DC OP3 O N N 107 DC P P N N 108 DC OP1 O N N 109 DC OP2 O N N 110 DC "O5'" O N N 111 DC "C5'" C N N 112 DC "C4'" C N R 113 DC "O4'" O N N 114 DC "C3'" C N S 115 DC "O3'" O N N 116 DC "C2'" C N N 117 DC "C1'" C N R 118 DC N1 N N N 119 DC C2 C N N 120 DC O2 O N N 121 DC N3 N N N 122 DC C4 C N N 123 DC N4 N N N 124 DC C5 C N N 125 DC C6 C N N 126 DC HOP3 H N N 127 DC HOP2 H N N 128 DC "H5'" H N N 129 DC "H5''" H N N 130 DC "H4'" H N N 131 DC "H3'" H N N 132 DC "HO3'" H N N 133 DC "H2'" H N N 134 DC "H2''" H N N 135 DC "H1'" H N N 136 DC H41 H N N 137 DC H42 H N N 138 DC H5 H N N 139 DC H6 H N N 140 G OP3 O N N 141 G P P N N 142 G OP1 O N N 143 G OP2 O N N 144 G "O5'" O N N 145 G "C5'" C N N 146 G "C4'" C N R 147 G "O4'" O N N 148 G "C3'" C N S 149 G "O3'" O N N 150 G "C2'" C N R 151 G "O2'" O N N 152 G "C1'" C N R 153 G N9 N Y N 154 G C8 C Y N 155 G N7 N Y N 156 G C5 C Y N 157 G C6 C N N 158 G O6 O N N 159 G N1 N N N 160 G C2 C N N 161 G N2 N N N 162 G N3 N N N 163 G C4 C Y N 164 G HOP3 H N N 165 G HOP2 H N N 166 G "H5'" H N N 167 G "H5''" H N N 168 G "H4'" H N N 169 G "H3'" H N N 170 G "HO3'" H N N 171 G "H2'" H N N 172 G "HO2'" H N N 173 G "H1'" H N N 174 G H8 H N N 175 G H1 H N N 176 G H21 H N N 177 G H22 H N N 178 GTP PG P N N 179 GTP O1G O N N 180 GTP O2G O N N 181 GTP O3G O N N 182 GTP O3B O N N 183 GTP PB P N N 184 GTP O1B O N N 185 GTP O2B O N N 186 GTP O3A O N N 187 GTP PA P N N 188 GTP O1A O N N 189 GTP O2A O N N 190 GTP "O5'" O N N 191 GTP "C5'" C N N 192 GTP "C4'" C N R 193 GTP "O4'" O N N 194 GTP "C3'" C N S 195 GTP "O3'" O N N 196 GTP "C2'" C N R 197 GTP "O2'" O N N 198 GTP "C1'" C N R 199 GTP N9 N Y N 200 GTP C8 C Y N 201 GTP N7 N Y N 202 GTP C5 C Y N 203 GTP C6 C N N 204 GTP O6 O N N 205 GTP N1 N N N 206 GTP C2 C N N 207 GTP N2 N N N 208 GTP N3 N N N 209 GTP C4 C Y N 210 GTP HOG2 H N N 211 GTP HOG3 H N N 212 GTP HOB2 H N N 213 GTP HOA2 H N N 214 GTP "H5'" H N N 215 GTP "H5''" H N N 216 GTP "H4'" H N N 217 GTP "H3'" H N N 218 GTP "HO3'" H N N 219 GTP "H2'" H N N 220 GTP "HO2'" H N N 221 GTP "H1'" H N N 222 GTP H8 H N N 223 GTP HN1 H N N 224 GTP HN21 H N N 225 GTP HN22 H N N 226 HOH O O N N 227 HOH H1 H N N 228 HOH H2 H N N 229 MN MN MN N N 230 OMC N1 N N N 231 OMC C2 C N N 232 OMC N3 N N N 233 OMC C4 C N N 234 OMC C5 C N N 235 OMC C6 C N N 236 OMC O2 O N N 237 OMC N4 N N N 238 OMC "C1'" C N R 239 OMC "C2'" C N R 240 OMC "O2'" O N N 241 OMC CM2 C N N 242 OMC "C3'" C N R 243 OMC "C4'" C N R 244 OMC "O4'" O N N 245 OMC "O3'" O N N 246 OMC "C5'" C N N 247 OMC "O5'" O N N 248 OMC P P N N 249 OMC OP1 O N N 250 OMC OP2 O N N 251 OMC OP3 O N N 252 OMC H5 H N N 253 OMC H6 H N N 254 OMC HN41 H N N 255 OMC HN42 H N N 256 OMC "H1'" H N N 257 OMC "H2'" H N N 258 OMC HM21 H N N 259 OMC HM22 H N N 260 OMC HM23 H N N 261 OMC "H3'" H N N 262 OMC "H4'" H N N 263 OMC "HO3'" H N N 264 OMC "H5'" H N N 265 OMC "H5''" H N N 266 OMC HOP2 H N N 267 OMC HOP3 H N N 268 U OP3 O N N 269 U P P N N 270 U OP1 O N N 271 U OP2 O N N 272 U "O5'" O N N 273 U "C5'" C N N 274 U "C4'" C N R 275 U "O4'" O N N 276 U "C3'" C N S 277 U "O3'" O N N 278 U "C2'" C N R 279 U "O2'" O N N 280 U "C1'" C N R 281 U N1 N N N 282 U C2 C N N 283 U O2 O N N 284 U N3 N N N 285 U C4 C N N 286 U O4 O N N 287 U C5 C N N 288 U C6 C N N 289 U HOP3 H N N 290 U HOP2 H N N 291 U "H5'" H N N 292 U "H5''" H N N 293 U "H4'" H N N 294 U "H3'" H N N 295 U "HO3'" H N N 296 U "H2'" H N N 297 U "HO2'" H N N 298 U "H1'" H N N 299 U H3 H N N 300 U H5 H N N 301 U H6 H N N 302 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 DC OP3 P sing N N 111 DC OP3 HOP3 sing N N 112 DC P OP1 doub N N 113 DC P OP2 sing N N 114 DC P "O5'" sing N N 115 DC OP2 HOP2 sing N N 116 DC "O5'" "C5'" sing N N 117 DC "C5'" "C4'" sing N N 118 DC "C5'" "H5'" sing N N 119 DC "C5'" "H5''" sing N N 120 DC "C4'" "O4'" sing N N 121 DC "C4'" "C3'" sing N N 122 DC "C4'" "H4'" sing N N 123 DC "O4'" "C1'" sing N N 124 DC "C3'" "O3'" sing N N 125 DC "C3'" "C2'" sing N N 126 DC "C3'" "H3'" sing N N 127 DC "O3'" "HO3'" sing N N 128 DC "C2'" "C1'" sing N N 129 DC "C2'" "H2'" sing N N 130 DC "C2'" "H2''" sing N N 131 DC "C1'" N1 sing N N 132 DC "C1'" "H1'" sing N N 133 DC N1 C2 sing N N 134 DC N1 C6 sing N N 135 DC C2 O2 doub N N 136 DC C2 N3 sing N N 137 DC N3 C4 doub N N 138 DC C4 N4 sing N N 139 DC C4 C5 sing N N 140 DC N4 H41 sing N N 141 DC N4 H42 sing N N 142 DC C5 C6 doub N N 143 DC C5 H5 sing N N 144 DC C6 H6 sing N N 145 G OP3 P sing N N 146 G OP3 HOP3 sing N N 147 G P OP1 doub N N 148 G P OP2 sing N N 149 G P "O5'" sing N N 150 G OP2 HOP2 sing N N 151 G "O5'" "C5'" sing N N 152 G "C5'" "C4'" sing N N 153 G "C5'" "H5'" sing N N 154 G "C5'" "H5''" sing N N 155 G "C4'" "O4'" sing N N 156 G "C4'" "C3'" sing N N 157 G "C4'" "H4'" sing N N 158 G "O4'" "C1'" sing N N 159 G "C3'" "O3'" sing N N 160 G "C3'" "C2'" sing N N 161 G "C3'" "H3'" sing N N 162 G "O3'" "HO3'" sing N N 163 G "C2'" "O2'" sing N N 164 G "C2'" "C1'" sing N N 165 G "C2'" "H2'" sing N N 166 G "O2'" "HO2'" sing N N 167 G "C1'" N9 sing N N 168 G "C1'" "H1'" sing N N 169 G N9 C8 sing Y N 170 G N9 C4 sing Y N 171 G C8 N7 doub Y N 172 G C8 H8 sing N N 173 G N7 C5 sing Y N 174 G C5 C6 sing N N 175 G C5 C4 doub Y N 176 G C6 O6 doub N N 177 G C6 N1 sing N N 178 G N1 C2 sing N N 179 G N1 H1 sing N N 180 G C2 N2 sing N N 181 G C2 N3 doub N N 182 G N2 H21 sing N N 183 G N2 H22 sing N N 184 G N3 C4 sing N N 185 GTP PG O1G doub N N 186 GTP PG O2G sing N N 187 GTP PG O3G sing N N 188 GTP PG O3B sing N N 189 GTP O2G HOG2 sing N N 190 GTP O3G HOG3 sing N N 191 GTP O3B PB sing N N 192 GTP PB O1B doub N N 193 GTP PB O2B sing N N 194 GTP PB O3A sing N N 195 GTP O2B HOB2 sing N N 196 GTP O3A PA sing N N 197 GTP PA O1A doub N N 198 GTP PA O2A sing N N 199 GTP PA "O5'" sing N N 200 GTP O2A HOA2 sing N N 201 GTP "O5'" "C5'" sing N N 202 GTP "C5'" "C4'" sing N N 203 GTP "C5'" "H5'" sing N N 204 GTP "C5'" "H5''" sing N N 205 GTP "C4'" "O4'" sing N N 206 GTP "C4'" "C3'" sing N N 207 GTP "C4'" "H4'" sing N N 208 GTP "O4'" "C1'" sing N N 209 GTP "C3'" "O3'" sing N N 210 GTP "C3'" "C2'" sing N N 211 GTP "C3'" "H3'" sing N N 212 GTP "O3'" "HO3'" sing N N 213 GTP "C2'" "O2'" sing N N 214 GTP "C2'" "C1'" sing N N 215 GTP "C2'" "H2'" sing N N 216 GTP "O2'" "HO2'" sing N N 217 GTP "C1'" N9 sing N N 218 GTP "C1'" "H1'" sing N N 219 GTP N9 C8 sing Y N 220 GTP N9 C4 sing Y N 221 GTP C8 N7 doub Y N 222 GTP C8 H8 sing N N 223 GTP N7 C5 sing Y N 224 GTP C5 C6 sing N N 225 GTP C5 C4 doub Y N 226 GTP C6 O6 doub N N 227 GTP C6 N1 sing N N 228 GTP N1 C2 sing N N 229 GTP N1 HN1 sing N N 230 GTP C2 N2 sing N N 231 GTP C2 N3 doub N N 232 GTP N2 HN21 sing N N 233 GTP N2 HN22 sing N N 234 GTP N3 C4 sing N N 235 HOH O H1 sing N N 236 HOH O H2 sing N N 237 OMC N1 C2 sing N N 238 OMC N1 C6 sing N N 239 OMC N1 "C1'" sing N N 240 OMC C2 N3 sing N N 241 OMC C2 O2 doub N N 242 OMC N3 C4 doub N N 243 OMC C4 C5 sing N N 244 OMC C4 N4 sing N N 245 OMC C5 C6 doub N N 246 OMC C5 H5 sing N N 247 OMC C6 H6 sing N N 248 OMC N4 HN41 sing N N 249 OMC N4 HN42 sing N N 250 OMC "C1'" "C2'" sing N N 251 OMC "C1'" "O4'" sing N N 252 OMC "C1'" "H1'" sing N N 253 OMC "C2'" "O2'" sing N N 254 OMC "C2'" "C3'" sing N N 255 OMC "C2'" "H2'" sing N N 256 OMC "O2'" CM2 sing N N 257 OMC CM2 HM21 sing N N 258 OMC CM2 HM22 sing N N 259 OMC CM2 HM23 sing N N 260 OMC "C3'" "C4'" sing N N 261 OMC "C3'" "O3'" sing N N 262 OMC "C3'" "H3'" sing N N 263 OMC "C4'" "O4'" sing N N 264 OMC "C4'" "C5'" sing N N 265 OMC "C4'" "H4'" sing N N 266 OMC "O3'" "HO3'" sing N N 267 OMC "C5'" "O5'" sing N N 268 OMC "C5'" "H5'" sing N N 269 OMC "C5'" "H5''" sing N N 270 OMC "O5'" P sing N N 271 OMC P OP1 doub N N 272 OMC P OP2 sing N N 273 OMC P OP3 sing N N 274 OMC OP2 HOP2 sing N N 275 OMC OP3 HOP3 sing N N 276 U OP3 P sing N N 277 U OP3 HOP3 sing N N 278 U P OP1 doub N N 279 U P OP2 sing N N 280 U P "O5'" sing N N 281 U OP2 HOP2 sing N N 282 U "O5'" "C5'" sing N N 283 U "C5'" "C4'" sing N N 284 U "C5'" "H5'" sing N N 285 U "C5'" "H5''" sing N N 286 U "C4'" "O4'" sing N N 287 U "C4'" "C3'" sing N N 288 U "C4'" "H4'" sing N N 289 U "O4'" "C1'" sing N N 290 U "C3'" "O3'" sing N N 291 U "C3'" "C2'" sing N N 292 U "C3'" "H3'" sing N N 293 U "O3'" "HO3'" sing N N 294 U "C2'" "O2'" sing N N 295 U "C2'" "C1'" sing N N 296 U "C2'" "H2'" sing N N 297 U "O2'" "HO2'" sing N N 298 U "C1'" N1 sing N N 299 U "C1'" "H1'" sing N N 300 U N1 C2 sing N N 301 U N1 C6 sing N N 302 U C2 O2 doub N N 303 U C2 N3 sing N N 304 U N3 C4 sing N N 305 U N3 H3 sing N N 306 U C4 O4 doub N N 307 U C4 C5 sing N N 308 U C5 C6 doub N N 309 U C5 H5 sing N N 310 U C6 H6 sing N N 311 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OEU 'double helix' 2OEU 'a-form double helix' 2OEU 'hairpin loop' 2OEU 'mismatched base pair' 2OEU 'triple helix' 2OEU 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 B DC 20 1_555 -0.635 -0.145 -0.295 -6.477 -8.117 1.576 1 A_GTP1:DC20_B A 1 ? B 20 ? 19 1 1 A G 2 1_555 B C 19 1_555 -0.372 -0.195 -0.107 -9.657 -12.101 0.092 2 A_G2:C19_B A 2 ? B 19 ? 19 1 1 A A 3 1_555 B U 18 1_555 -0.010 -0.135 0.150 -8.576 -7.515 -0.316 3 A_A3:U18_B A 3 ? B 18 ? 20 1 1 A U 4 1_555 B C 15 1_555 -1.033 -0.073 -1.026 -6.514 -6.784 -34.902 4 A_U4:C15_B A 4 ? B 15 ? ? ? 1 A G 5 1_555 B C 14 1_555 -0.331 -0.169 0.237 -0.885 -14.789 -0.558 5 A_G5:C14_B A 5 ? B 14 ? 19 1 1 A U 6 1_555 A A 28 1_555 4.181 -2.123 -0.174 -12.438 -3.898 -96.654 6 A_U6:A28_A A 6 ? A 28 ? 24 4 1 A A 31 1_555 B U 13 1_555 -4.167 -2.282 -0.052 -11.589 3.400 -94.764 7 A_A31:U13_B A 31 ? B 13 ? 24 4 1 A U 9 1_555 B A 12 1_555 -0.090 -0.106 0.302 8.446 -8.574 0.647 8 A_U9:A12_B A 9 ? B 12 ? 20 1 1 A A 10 1_555 B 5BU 11 1_555 0.051 -0.182 0.161 12.508 -18.923 4.352 9 A_A10:5BU11_B A 10 ? B 11 ? 20 1 1 A C 11 1_555 B G 10 1_555 0.560 -0.207 0.057 8.019 -18.378 3.414 10 A_C11:G10_B A 11 ? B 10 ? 19 1 1 A C 12 1_555 B G 9 1_555 0.350 -0.280 -0.127 -2.094 -9.980 -0.511 11 A_C12:G9_B A 12 ? B 9 ? 19 1 1 A A 13 1_555 B U 8 1_555 0.048 -0.102 0.039 -7.061 -12.610 -0.041 12 A_A13:U8_B A 13 ? B 8 ? 20 1 1 A G 14 1_555 B C 7 1_555 -0.261 -0.205 0.288 -3.413 -14.017 -1.048 13 A_G14:C7_B A 14 ? B 7 ? 19 1 1 A C 15 1_555 A G 20 1_555 0.195 -0.245 0.130 8.310 -3.052 -5.312 14 A_C15:G20_A A 15 ? A 20 ? 19 1 1 A C 8 1_555 A C 26 1_555 2.018 1.577 -0.201 7.735 1.477 178.569 15 A_C8:C26_A A 8 ? A 26 ? 15 2 1 A G 32 1_555 A C 25 1_555 -0.271 -0.203 0.160 -0.979 -9.773 -0.751 16 A_G32:C25_A A 32 ? A 25 ? 19 1 1 A G 33 1_555 A C 24 1_555 -0.631 -0.415 0.040 -3.855 -8.317 -4.027 17 A_G33:C24_A A 33 ? A 24 ? 19 1 1 A A 34 1_555 A U 23 1_555 0.096 -0.074 0.130 2.496 -10.294 -0.225 18 A_A34:U23_A A 34 ? A 23 ? 20 1 1 A C 35 1_555 A G 22 1_555 0.350 -0.200 -0.131 1.402 -17.887 1.368 19 A_C35:G22_A A 35 ? A 22 ? 19 1 1 A G 36 1_555 A A 21 1_555 6.853 -4.460 0.365 0.333 -16.254 -5.940 20 A_G36:A21_A A 36 ? A 21 ? 11 10 1 A A 37 1_555 B OMC 6 1_555 -5.098 -1.690 -0.964 -16.741 10.442 -62.044 21 A_A37:OMC6_B A 37 ? B 6 ? ? ? 1 A A 38 1_555 A G 17 1_555 -3.873 3.727 0.343 38.543 -38.902 78.688 22 A_A38:G17_A A 38 ? A 17 ? ? ? 1 A A 39 1_555 B U 5 1_555 -0.051 -0.069 0.443 9.133 -6.671 2.360 23 A_A39:U5_B A 39 ? B 5 ? 20 1 1 A C 40 1_555 B G 4 1_555 0.143 -0.200 -0.294 15.666 -21.202 -0.998 24 A_C40:G4_B A 40 ? B 4 ? 19 1 1 A G 41 1_555 B C 3 1_555 -0.208 -0.171 -0.095 -7.448 -18.053 0.065 25 A_G41:C3_B A 41 ? B 3 ? 19 1 1 A C 42 1_555 B G 2 1_555 0.238 -0.068 0.162 -8.335 -13.587 3.664 26 A_C42:G2_B A 42 ? B 2 ? 19 1 1 A C 43 1_555 B G 1 1_555 0.304 -0.325 0.028 4.836 -5.602 -1.364 27 A_C43:G1_B A 43 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 B DC 20 1_555 A G 2 1_555 B C 19 1_555 -0.214 -2.045 3.390 -0.809 3.739 31.780 -4.385 0.242 3.140 6.797 1.472 32.004 1 AA_GTP1G2:C19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A G 2 1_555 B C 19 1_555 A A 3 1_555 B U 18 1_555 -0.170 -1.685 3.269 -0.889 3.609 33.135 -3.521 0.153 3.077 6.304 1.553 33.337 2 AA_G2A3:U18C19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A A 3 1_555 B U 18 1_555 A U 4 1_555 B C 15 1_555 3.211 -1.056 4.098 -2.098 9.235 67.500 -1.370 -2.965 3.854 8.270 1.879 68.083 3 AA_A3U4:C15U18_BB A 3 ? B 18 ? A 4 ? B 15 ? 1 A U 4 1_555 B C 15 1_555 A G 5 1_555 B C 14 1_555 1.906 -1.612 3.247 -10.091 12.152 32.607 -4.022 -4.254 1.894 20.230 16.800 36.138 4 AA_U4G5:C14C15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A G 5 1_555 B C 14 1_555 A U 6 1_555 A A 28 1_555 -2.615 -2.254 3.530 2.840 1.932 83.819 -1.735 2.028 3.413 1.446 -2.125 83.876 5 AA_G5U6:A28C14_AB A 5 ? B 14 ? A 6 ? A 28 ? 1 A U 6 1_555 A A 28 1_555 A A 31 1_555 B U 13 1_555 3.091 -3.717 5.150 39.877 -66.696 -154.647 2.179 1.744 4.432 33.942 20.294 -160.320 6 AA_U6A31:U13A28_BA A 6 ? A 28 ? A 31 ? B 13 ? 1 A A 31 1_555 B U 13 1_555 A U 9 1_555 B A 12 1_555 1.414 -1.349 2.926 -11.310 7.067 78.200 -1.223 -1.372 2.626 5.565 8.906 79.149 7 AA_A31U9:A12U13_BB A 31 ? B 13 ? A 9 ? B 12 ? 1 A U 9 1_555 B A 12 1_555 A A 10 1_555 B 5BU 11 1_555 -0.604 -1.370 3.031 -0.935 10.816 32.191 -3.848 0.906 2.471 18.849 1.629 33.927 8 AA_U9A10:5BU11A12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 A A 10 1_555 B 5BU 11 1_555 A C 11 1_555 B G 10 1_555 0.491 -1.447 3.301 0.710 6.150 36.347 -3.103 -0.683 3.033 9.771 -1.128 36.853 9 AA_A10C11:G105BU11_BB A 10 ? B 11 ? A 11 ? B 10 ? 1 A C 11 1_555 B G 10 1_555 A C 12 1_555 B G 9 1_555 -1.161 -2.087 3.378 -1.666 14.530 28.182 -6.220 1.852 2.135 27.613 3.166 31.683 10 AA_C11C12:G9G10_BB A 11 ? B 10 ? A 12 ? B 9 ? 1 A C 12 1_555 B G 9 1_555 A A 13 1_555 B U 8 1_555 0.055 -1.089 3.247 -0.476 15.620 35.138 -3.472 -0.138 2.554 24.435 0.745 38.356 11 AA_C12A13:U8G9_BB A 12 ? B 9 ? A 13 ? B 8 ? 1 A A 13 1_555 B U 8 1_555 A G 14 1_555 B C 7 1_555 0.950 -1.720 3.124 2.593 11.051 26.448 -5.619 -1.408 2.314 22.861 -5.364 28.741 12 AA_A13G14:C7U8_BB A 13 ? B 8 ? A 14 ? B 7 ? 1 A G 14 1_555 B C 7 1_555 A C 15 1_555 A G 20 1_555 -1.508 -1.639 3.034 1.387 12.478 22.922 -6.326 3.639 1.818 28.791 -3.200 26.095 13 AA_G14C15:G20C7_AB A 14 ? B 7 ? A 15 ? A 20 ? 1 A C 8 1_555 A C 26 1_555 A G 32 1_555 A C 25 1_555 -2.480 -2.194 1.360 87.694 -152.476 138.294 -0.869 1.371 1.508 -76.355 -43.914 178.539 14 AA_C8G32:C25C26_AA A 8 ? A 26 ? A 32 ? A 25 ? 1 A G 32 1_555 A C 25 1_555 A G 33 1_555 A C 24 1_555 -0.254 -2.029 3.218 -0.508 5.934 31.629 -4.647 0.373 2.804 10.767 0.922 32.171 15 AA_G32G33:C24C25_AA A 32 ? A 25 ? A 33 ? A 24 ? 1 A G 33 1_555 A C 24 1_555 A A 34 1_555 A U 23 1_555 -0.818 -1.725 3.051 -2.970 6.836 31.401 -4.187 1.002 2.690 12.412 5.392 32.252 16 AA_G33A34:U23C24_AA A 33 ? A 24 ? A 34 ? A 23 ? 1 A A 34 1_555 A U 23 1_555 A C 35 1_555 A G 22 1_555 0.662 -1.287 3.241 3.627 7.692 34.255 -3.220 -0.577 2.945 12.816 -6.042 35.264 17 AA_A34C35:G22U23_AA A 34 ? A 23 ? A 35 ? A 22 ? 1 A C 35 1_555 A G 22 1_555 A G 36 1_555 A A 21 1_555 -0.774 -1.018 3.563 0.034 7.641 59.777 -1.417 0.773 3.422 7.633 -0.034 60.219 18 AA_C35G36:A21G22_AA A 35 ? A 22 ? A 36 ? A 21 ? 1 A G 36 1_555 A A 21 1_555 A A 37 1_555 B OMC 6 1_555 -0.930 -1.166 3.788 8.805 4.276 22.184 -4.235 5.217 2.937 10.482 -21.584 24.222 19 AA_G36A37:OMC6A21_BA A 36 ? A 21 ? A 37 ? B 6 ? 1 A A 37 1_555 B OMC 6 1_555 A A 38 1_555 A G 17 1_555 1.190 -4.014 2.245 -28.421 36.081 -21.391 0.824 -1.665 4.479 -52.121 -41.055 -50.422 20 AA_A37A38:G17OMC6_AB A 37 ? B 6 ? A 38 ? A 17 ? 1 A A 38 1_555 A G 17 1_555 A A 39 1_555 B U 5 1_555 0.953 2.524 3.448 0.224 -21.530 83.134 2.346 -0.698 2.856 -15.990 -0.167 85.384 21 AA_A38A39:U5G17_BA A 38 ? A 17 ? A 39 ? B 5 ? 1 A A 39 1_555 B U 5 1_555 A C 40 1_555 B G 4 1_555 -0.528 -0.972 3.166 3.070 10.011 31.087 -3.305 1.421 2.670 18.049 -5.535 32.762 22 AA_A39C40:G4U5_BB A 39 ? B 5 ? A 40 ? B 4 ? 1 A C 40 1_555 B G 4 1_555 A G 41 1_555 B C 3 1_555 -0.011 -1.445 3.704 -3.080 20.442 34.911 -4.451 -0.340 2.510 30.951 4.664 40.408 23 AA_C40G41:C3G4_BB A 40 ? B 4 ? A 41 ? B 3 ? 1 A G 41 1_555 B C 3 1_555 A C 42 1_555 B G 2 1_555 0.075 -1.352 3.225 -0.268 7.662 35.950 -3.134 -0.153 2.885 12.243 0.428 36.732 24 AA_G41C42:G2C3_BB A 41 ? B 3 ? A 42 ? B 2 ? 1 A C 42 1_555 B G 2 1_555 A C 43 1_555 B G 1 1_555 1.161 -2.191 2.873 5.846 7.211 22.911 -6.931 -1.248 2.308 17.271 -14.003 24.697 25 AA_C42C43:G1G2_BB A 42 ? B 2 ? A 43 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MANGANESE (II) ION' MN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GOZ _pdbx_initial_refinement_model.details ? #