HEADER HYDROLASE 03-JAN-07 2OFK TITLE CRYSTAL STRUCTURE OF 3-METHYLADENINE DNA GLYCOSYLASE I (TAG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-METHYLADENINE DNA GLYCOSYLASE I, CONSTITUTIVE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-METHYLADENINE DNA GLYCOSYLASE I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 601; SOURCE 4 GENE: TAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS 3-METHYLADENINE, DNA REPAIR, GLYCOSYLASE, BASE EXCISION, HELIX- KEYWDS 2 HAIRPIN-HELIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.METZ,T.HOLLIS,B.F.EICHMAN REVDAT 3 27-DEC-23 2OFK 1 REMARK LINK REVDAT 2 24-FEB-09 2OFK 1 VERSN REVDAT 1 15-MAY-07 2OFK 0 JRNL AUTH A.H.METZ,T.HOLLIS,B.F.EICHMAN JRNL TITL DNA DAMAGE RECOGNITION AND REPAIR BY 3-METHYLADENINE DNA JRNL TITL 2 GLYCOSYLASE I (TAG). JRNL REF EMBO J. V. 26 2411 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17410210 JRNL DOI 10.1038/SJ.EMBOJ.7601649 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 60990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 334 REMARK 3 BIN FREE R VALUE : 0.2090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 2.64000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.938 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3042 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4077 ; 1.427 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 5.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;35.030 ;23.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;12.556 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.712 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2268 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1470 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2114 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1855 ; 1.321 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2921 ; 1.850 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1345 ; 2.838 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1156 ; 3.987 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3200 ; 1.638 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 328 ; 7.053 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2974 ; 3.385 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 182 REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2442 34.4857 25.0813 REMARK 3 T TENSOR REMARK 3 T11: -0.0778 T22: -0.0276 REMARK 3 T33: -0.1075 T12: 0.1370 REMARK 3 T13: -0.0146 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.1126 L22: 0.6495 REMARK 3 L33: 1.2177 L12: 0.4964 REMARK 3 L13: 0.2941 L23: 0.2027 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.1292 S13: 0.1766 REMARK 3 S21: 0.0325 S22: -0.0507 S23: 0.0265 REMARK 3 S31: -0.2447 S32: -0.2653 S33: 0.0825 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 182 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4797 21.9089 2.7888 REMARK 3 T TENSOR REMARK 3 T11: -0.0470 T22: -0.1107 REMARK 3 T33: -0.0481 T12: 0.0254 REMARK 3 T13: 0.0078 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.5519 L22: 0.5433 REMARK 3 L33: 1.2178 L12: -0.7545 REMARK 3 L13: -0.1343 L23: -0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.0483 S13: -0.0446 REMARK 3 S21: -0.0402 S22: 0.0363 S23: 0.0282 REMARK 3 S31: 0.1877 S32: 0.0437 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 907 B 1108 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8037 27.7298 10.9149 REMARK 3 T TENSOR REMARK 3 T11: -0.0357 T22: -0.0575 REMARK 3 T33: -0.0643 T12: 0.0614 REMARK 3 T13: 0.0012 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.3971 L22: 0.0160 REMARK 3 L33: 0.0989 L12: 0.0024 REMARK 3 L13: 0.1101 L23: -0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.0176 S13: 0.0358 REMARK 3 S21: -0.0019 S22: 0.0392 S23: 0.0094 REMARK 3 S31: 0.0057 S32: 0.0104 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 901 B 906 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7925 27.8958 15.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0001 REMARK 3 T33: 0.0000 T12: -0.0001 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.1192 L22: 0.0351 REMARK 3 L33: 1.2037 L12: -0.2629 REMARK 3 L13: 1.1886 L23: -0.1838 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: -0.1706 S13: 0.0568 REMARK 3 S21: -0.0116 S22: -0.0316 S23: -0.0591 REMARK 3 S31: 0.2368 S32: -0.1703 S33: -0.0628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000, 0.9793, 0.9718, 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24700 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 200, 5% PEG 3000, 100 MM MES REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.84050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASSYMETRIC UNIT IS COMPOSED OF 2 BIOLOGICAL UNITS (MONOMERS) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLN A 9 OE1 NE2 REMARK 470 ARG A 29 CD NE CZ NH1 NH2 REMARK 470 ARG A 78 CZ NH1 NH2 REMARK 470 GLN A 128 OE1 NE2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 GLN B 9 CD OE1 NE2 REMARK 470 GLN B 125 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 87 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 87 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 905 REMARK 610 PGE B 906 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 HIS A 17 NE2 111.3 REMARK 620 3 HIS A 175 ND1 109.6 102.8 REMARK 620 4 CYS A 179 SG 118.4 102.7 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 4 SG REMARK 620 2 HIS B 17 NE2 110.8 REMARK 620 3 HIS B 175 ND1 107.9 105.1 REMARK 620 4 CYS B 179 SG 116.9 103.0 112.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 906 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OFI RELATED DB: PDB REMARK 900 TAG/DNA COMPLEX DBREF 2OFK A 1 183 UNP Q8Z2A5 Q8Z2A5_SALTI 1 183 DBREF 2OFK B 1 183 UNP Q8Z2A5 Q8Z2A5_SALTI 1 183 SEQRES 1 A 183 MET GLN ARG CYS ASP TRP VAL SER GLN ASP PRO LEU TYR SEQRES 2 A 183 ILE ALA TYR HIS ASP ASN GLU TRP GLY VAL PRO GLU THR SEQRES 3 A 183 ASP SER ARG LYS LEU PHE GLU MET ILE CYS LEU GLU GLY SEQRES 4 A 183 GLN GLN ALA GLY LEU SER TRP ILE THR VAL LEU LYS LYS SEQRES 5 A 183 ARG GLU ASN TYR ARG ALA CYS PHE HIS GLN PHE ASP PRO SEQRES 6 A 183 ILE ARG ILE ALA ALA MET GLN GLU GLU ASP VAL GLU ARG SEQRES 7 A 183 LEU LEU GLN ASN THR GLY ILE ILE ARG HIS ARG GLY LYS SEQRES 8 A 183 ILE GLN ALA ILE ILE SER ASN ALA ARG ALA TRP LEU ALA SEQRES 9 A 183 MET GLU GLN ASN GLY GLU SER PHE ALA ASP PHE VAL TRP SEQRES 10 A 183 SER PHE VAL ASP GLY GLN PRO GLN ILE THR GLN ALA ALA SEQRES 11 A 183 SER LEU ASP LYS ILE PRO THR SER THR PRO ALA SER ASP SEQRES 12 A 183 ALA LEU ALA LYS ALA LEU LYS LYS ARG GLY PHE LYS PHE SEQRES 13 A 183 VAL GLY THR THR ILE CYS TYR SER PHE MET GLN ALA CYS SEQRES 14 A 183 GLY LEU VAL ASN ASP HIS ILE THR GLY CYS PHE CYS HIS SEQRES 15 A 183 PRO SEQRES 1 B 183 MET GLN ARG CYS ASP TRP VAL SER GLN ASP PRO LEU TYR SEQRES 2 B 183 ILE ALA TYR HIS ASP ASN GLU TRP GLY VAL PRO GLU THR SEQRES 3 B 183 ASP SER ARG LYS LEU PHE GLU MET ILE CYS LEU GLU GLY SEQRES 4 B 183 GLN GLN ALA GLY LEU SER TRP ILE THR VAL LEU LYS LYS SEQRES 5 B 183 ARG GLU ASN TYR ARG ALA CYS PHE HIS GLN PHE ASP PRO SEQRES 6 B 183 ILE ARG ILE ALA ALA MET GLN GLU GLU ASP VAL GLU ARG SEQRES 7 B 183 LEU LEU GLN ASN THR GLY ILE ILE ARG HIS ARG GLY LYS SEQRES 8 B 183 ILE GLN ALA ILE ILE SER ASN ALA ARG ALA TRP LEU ALA SEQRES 9 B 183 MET GLU GLN ASN GLY GLU SER PHE ALA ASP PHE VAL TRP SEQRES 10 B 183 SER PHE VAL ASP GLY GLN PRO GLN ILE THR GLN ALA ALA SEQRES 11 B 183 SER LEU ASP LYS ILE PRO THR SER THR PRO ALA SER ASP SEQRES 12 B 183 ALA LEU ALA LYS ALA LEU LYS LYS ARG GLY PHE LYS PHE SEQRES 13 B 183 VAL GLY THR THR ILE CYS TYR SER PHE MET GLN ALA CYS SEQRES 14 B 183 GLY LEU VAL ASN ASP HIS ILE THR GLY CYS PHE CYS HIS SEQRES 15 B 183 PRO HET ZN A 201 1 HET PGE A 701 10 HET PGE A 903 10 HET PGE A 904 10 HET PGE A 905 7 HET ZN B 201 1 HET PGE B 801 10 HET PGE B 901 10 HET PGE B 902 10 HET PGE B 906 4 HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PGE 8(C6 H14 O4) FORMUL 13 HOH *328(H2 O) HELIX 1 1 ASP A 10 GLU A 20 1 11 HELIX 2 2 ASP A 27 GLN A 41 1 15 HELIX 3 3 SER A 45 LYS A 52 1 8 HELIX 4 4 LYS A 52 PHE A 60 1 9 HELIX 5 5 HIS A 61 PHE A 63 5 3 HELIX 6 6 ASP A 64 ALA A 70 1 7 HELIX 7 7 GLN A 72 LEU A 80 1 9 HELIX 8 8 HIS A 88 ASN A 108 1 21 HELIX 9 9 SER A 111 PHE A 119 1 9 HELIX 10 10 SER A 131 ILE A 135 5 5 HELIX 11 11 THR A 139 ARG A 152 1 14 HELIX 12 12 GLY A 158 CYS A 169 1 12 HELIX 13 13 ASP B 10 GLU B 20 1 11 HELIX 14 14 ASP B 27 GLN B 41 1 15 HELIX 15 15 SER B 45 LYS B 52 1 8 HELIX 16 16 LYS B 52 PHE B 60 1 9 HELIX 17 17 HIS B 61 PHE B 63 5 3 HELIX 18 18 ASP B 64 ALA B 70 1 7 HELIX 19 19 GLN B 72 LEU B 80 1 9 HELIX 20 20 HIS B 88 ASN B 108 1 21 HELIX 21 21 SER B 111 PHE B 119 1 9 HELIX 22 22 SER B 131 ILE B 135 5 5 HELIX 23 23 THR B 139 ARG B 152 1 14 HELIX 24 24 GLY B 158 CYS B 169 1 12 SHEET 1 A 2 GLN A 125 ILE A 126 0 SHEET 2 A 2 VAL A 172 ASN A 173 1 O ASN A 173 N GLN A 125 SHEET 1 B 2 GLN B 125 ILE B 126 0 SHEET 2 B 2 VAL B 172 ASN B 173 1 O ASN B 173 N GLN B 125 LINK SG CYS A 4 ZN ZN A 201 1555 1555 2.31 LINK NE2 HIS A 17 ZN ZN A 201 1555 1555 2.07 LINK ND1 HIS A 175 ZN ZN A 201 1555 1555 2.04 LINK SG CYS A 179 ZN ZN A 201 1555 1555 2.32 LINK SG CYS B 4 ZN ZN B 201 1555 1555 2.29 LINK NE2 HIS B 17 ZN ZN B 201 1555 1555 2.05 LINK ND1 HIS B 175 ZN ZN B 201 1555 1555 2.05 LINK SG CYS B 179 ZN ZN B 201 1555 1555 2.30 SITE 1 AC1 4 CYS A 4 HIS A 17 HIS A 175 CYS A 179 SITE 1 AC2 4 CYS B 4 HIS B 17 HIS B 175 CYS B 179 SITE 1 AC3 13 TRP A 6 TYR A 13 TYR A 16 GLU A 38 SITE 2 AC3 13 TRP A 46 LEU A 132 SER A 164 GLN A 167 SITE 3 AC3 13 ALA A 168 HOH A 949 GLN B 81 ARG B 87 SITE 4 AC3 13 HOH B 923 SITE 1 AC4 10 GLN A 81 ARG A 87 TRP B 6 TYR B 13 SITE 2 AC4 10 GLU B 38 TRP B 46 SER B 164 ALA B 168 SITE 3 AC4 10 HOH B 921 HOH B 991 SITE 1 AC5 6 MET B 71 GLN B 72 GLN B 93 ILE B 96 SITE 2 AC5 6 SER B 97 ARG B 100 SITE 1 AC6 3 ASP B 114 TRP B 117 GLY B 122 SITE 1 AC7 3 ILE A 96 SER A 97 ARG A 100 SITE 1 AC8 3 THR A 26 ASP A 114 TRP A 117 SITE 1 AC9 2 ASP A 133 LYS A 134 SITE 1 BC1 7 ARG A 78 GLN B 41 ALA B 42 GLY B 43 SITE 2 BC1 7 LEU B 44 HOH B 957 HOH B 993 CRYST1 57.455 63.681 62.127 90.00 106.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017405 0.000000 0.005301 0.00000 SCALE2 0.000000 0.015703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016826 0.00000