HEADER TRANSFERASE 04-JAN-07 2OFX TITLE CRYSTAL STRUCTURE OF THE APSK DOMAIN OF HUMAN PAPSS1 IN COMPLEX WITH TITLE 2 ADPMG AND PAPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE COMPND 3 SYNTHETASE 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: APS KINASE DOMAIN (RESIDUES 1-227); COMPND 6 EC: 2.7.1.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAPSS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-RB WITH ENGINEERED TEV CUTTING SITE KEYWDS NUCLEOTIDE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SEKULIC,A.LAVIE REVDAT 3 30-AUG-23 2OFX 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2OFX 1 VERSN REVDAT 1 10-APR-07 2OFX 0 JRNL AUTH N.SEKULIC,K.DIETRICH,I.PAARMANN,S.ORT,M.KONRAD,A.LAVIE JRNL TITL ELUCIDATION OF THE ACTIVE CONFORMATION OF THE APS-KINASE JRNL TITL 2 DOMAIN OF HUMAN PAPS SYNTHETASE 1. JRNL REF J.MOL.BIOL. V. 367 488 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17276460 JRNL DOI 10.1016/J.JMB.2007.01.025 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 27683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3415 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4666 ; 1.571 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 6.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;35.381 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;14.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.150 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2564 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1966 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2309 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 342 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.045 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.236 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2073 ; 0.773 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3266 ; 1.260 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1520 ; 2.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1400 ; 2.967 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27832 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 18.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.13 REMARK 200 R MERGE FOR SHELL (I) : 0.16500 REMARK 200 R SYM FOR SHELL (I) : 0.14800 REMARK 200 FOR SHELL : 9.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OFW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.2-0.4MM AMMONIUM REMARK 280 DIHYDROGENPHOSPHATE PROTEIN SOLUTION: 6 MG/ML PROTEIN, 2 MM PAPS, REMARK 280 2 MM ADP, 5 MM MGCL2, 50 MM TRIS PH 7.5, 50 MM KCL , PH 7.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.66000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 21 REMARK 465 GLY A 22 REMARK 465 GLN B 21 REMARK 465 GLY B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 215 O HOH B 1474 1.95 REMARK 500 OE1 GLN A 215 O HOH A 1393 1.96 REMARK 500 NE2 GLN B 215 O HOH B 1471 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 187 O HOH B 1472 1556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 24 118.19 -168.76 REMARK 500 SER A 133 68.86 37.62 REMARK 500 ASP A 169 65.60 11.82 REMARK 500 SER B 133 68.84 39.57 REMARK 500 ASP B 169 54.05 28.86 REMARK 500 ASP B 189 25.13 -144.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 66 OG1 REMARK 620 2 PPS A1100 O3P 170.4 REMARK 620 3 ADP A1300 O2B 89.9 94.8 REMARK 620 4 HOH A1327 O 94.2 94.2 89.9 REMARK 620 5 HOH A1358 O 85.4 85.9 95.5 174.6 REMARK 620 6 HOH A1363 O 81.2 94.7 169.9 86.1 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 66 OG1 REMARK 620 2 PPS B1200 O3P 170.9 REMARK 620 3 ADP B1400 O2B 86.0 94.8 REMARK 620 4 HOH B1410 O 84.5 104.5 92.1 REMARK 620 5 HOH B1438 O 84.0 86.8 94.6 166.2 REMARK 620 6 HOH B1460 O 84.3 95.7 169.0 81.7 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPS A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPS B 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OFW RELATED DB: PDB DBREF 2OFX A 21 227 UNP O43252 PAPS1_HUMAN 18 227 DBREF 2OFX B 21 227 UNP O43252 PAPS1_HUMAN 18 227 SEQADV 2OFX GLN A 21 UNP O43252 CLONING ARTIFACT SEQADV 2OFX GLY A 22 UNP O43252 CLONING ARTIFACT SEQADV 2OFX HIS A 23 UNP O43252 CLONING ARTIFACT SEQADV 2OFX A UNP O43252 GLU 2 DELETION SEQADV 2OFX A UNP O43252 ILE 3 DELETION SEQADV 2OFX A UNP O43252 PRO 4 DELETION SEQADV 2OFX A UNP O43252 GLY 5 DELETION SEQADV 2OFX A UNP O43252 SER 6 DELETION SEQADV 2OFX A UNP O43252 LEU 7 DELETION SEQADV 2OFX A UNP O43252 CYS 8 DELETION SEQADV 2OFX A UNP O43252 LYS 9 DELETION SEQADV 2OFX A UNP O43252 LYS 10 DELETION SEQADV 2OFX A UNP O43252 VAL 11 DELETION SEQADV 2OFX A UNP O43252 LYS 12 DELETION SEQADV 2OFX A UNP O43252 LEU 13 DELETION SEQADV 2OFX A UNP O43252 SER 14 DELETION SEQADV 2OFX A UNP O43252 ASN 15 DELETION SEQADV 2OFX A UNP O43252 ASN 16 DELETION SEQADV 2OFX A UNP O43252 ALA 17 DELETION SEQADV 2OFX A UNP O43252 GLN 18 DELETION SEQADV 2OFX A UNP O43252 ASN 19 DELETION SEQADV 2OFX A UNP O43252 TRP 20 DELETION SEQADV 2OFX A UNP O43252 GLY 21 DELETION SEQADV 2OFX A UNP O43252 MET 22 DELETION SEQADV 2OFX A UNP O43252 GLN 23 DELETION SEQADV 2OFX A UNP O43252 ARG 24 DELETION SEQADV 2OFX GLN B 21 UNP O43252 CLONING ARTIFACT SEQADV 2OFX GLY B 22 UNP O43252 CLONING ARTIFACT SEQADV 2OFX HIS B 23 UNP O43252 CLONING ARTIFACT SEQADV 2OFX B UNP O43252 GLU 2 DELETION SEQADV 2OFX B UNP O43252 ILE 3 DELETION SEQADV 2OFX B UNP O43252 PRO 4 DELETION SEQADV 2OFX B UNP O43252 GLY 5 DELETION SEQADV 2OFX B UNP O43252 SER 6 DELETION SEQADV 2OFX B UNP O43252 LEU 7 DELETION SEQADV 2OFX B UNP O43252 CYS 8 DELETION SEQADV 2OFX B UNP O43252 LYS 9 DELETION SEQADV 2OFX B UNP O43252 LYS 10 DELETION SEQADV 2OFX B UNP O43252 VAL 11 DELETION SEQADV 2OFX B UNP O43252 LYS 12 DELETION SEQADV 2OFX B UNP O43252 LEU 13 DELETION SEQADV 2OFX B UNP O43252 SER 14 DELETION SEQADV 2OFX B UNP O43252 ASN 15 DELETION SEQADV 2OFX B UNP O43252 ASN 16 DELETION SEQADV 2OFX B UNP O43252 ALA 17 DELETION SEQADV 2OFX B UNP O43252 GLN 18 DELETION SEQADV 2OFX B UNP O43252 ASN 19 DELETION SEQADV 2OFX B UNP O43252 TRP 20 DELETION SEQADV 2OFX B UNP O43252 GLY 21 DELETION SEQADV 2OFX B UNP O43252 MET 22 DELETION SEQADV 2OFX B UNP O43252 GLN 23 DELETION SEQADV 2OFX B UNP O43252 ARG 24 DELETION SEQRES 1 A 207 GLN GLY HIS MET ALA THR ASN VAL THR TYR GLN ALA HIS SEQRES 2 A 207 HIS VAL SER ARG ASN LYS ARG GLY GLN VAL VAL GLY THR SEQRES 3 A 207 ARG GLY GLY PHE ARG GLY CYS THR VAL TRP LEU THR GLY SEQRES 4 A 207 LEU SER GLY ALA GLY LYS THR THR VAL SER MET ALA LEU SEQRES 5 A 207 GLU GLU TYR LEU VAL CYS HIS GLY ILE PRO CYS TYR THR SEQRES 6 A 207 LEU ASP GLY ASP ASN ILE ARG GLN GLY LEU ASN LYS ASN SEQRES 7 A 207 LEU GLY PHE SER PRO GLU ASP ARG GLU GLU ASN VAL ARG SEQRES 8 A 207 ARG ILE ALA GLU VAL ALA LYS LEU PHE ALA ASP ALA GLY SEQRES 9 A 207 LEU VAL CYS ILE THR SER PHE ILE SER PRO TYR THR GLN SEQRES 10 A 207 ASP ARG ASN ASN ALA ARG GLN ILE HIS GLU GLY ALA SER SEQRES 11 A 207 LEU PRO PHE PHE GLU VAL PHE VAL ASP ALA PRO LEU HIS SEQRES 12 A 207 VAL CYS GLU GLN ARG ASP VAL LYS GLY LEU TYR LYS LYS SEQRES 13 A 207 ALA ARG ALA GLY GLU ILE LYS GLY PHE THR GLY ILE ASP SEQRES 14 A 207 SER GLU TYR GLU LYS PRO GLU ALA PRO GLU LEU VAL LEU SEQRES 15 A 207 LYS THR ASP SER CYS ASP VAL ASN ASP CYS VAL GLN GLN SEQRES 16 A 207 VAL VAL GLU LEU LEU GLN GLU ARG ASP ILE VAL PRO SEQRES 1 B 207 GLN GLY HIS MET ALA THR ASN VAL THR TYR GLN ALA HIS SEQRES 2 B 207 HIS VAL SER ARG ASN LYS ARG GLY GLN VAL VAL GLY THR SEQRES 3 B 207 ARG GLY GLY PHE ARG GLY CYS THR VAL TRP LEU THR GLY SEQRES 4 B 207 LEU SER GLY ALA GLY LYS THR THR VAL SER MET ALA LEU SEQRES 5 B 207 GLU GLU TYR LEU VAL CYS HIS GLY ILE PRO CYS TYR THR SEQRES 6 B 207 LEU ASP GLY ASP ASN ILE ARG GLN GLY LEU ASN LYS ASN SEQRES 7 B 207 LEU GLY PHE SER PRO GLU ASP ARG GLU GLU ASN VAL ARG SEQRES 8 B 207 ARG ILE ALA GLU VAL ALA LYS LEU PHE ALA ASP ALA GLY SEQRES 9 B 207 LEU VAL CYS ILE THR SER PHE ILE SER PRO TYR THR GLN SEQRES 10 B 207 ASP ARG ASN ASN ALA ARG GLN ILE HIS GLU GLY ALA SER SEQRES 11 B 207 LEU PRO PHE PHE GLU VAL PHE VAL ASP ALA PRO LEU HIS SEQRES 12 B 207 VAL CYS GLU GLN ARG ASP VAL LYS GLY LEU TYR LYS LYS SEQRES 13 B 207 ALA ARG ALA GLY GLU ILE LYS GLY PHE THR GLY ILE ASP SEQRES 14 B 207 SER GLU TYR GLU LYS PRO GLU ALA PRO GLU LEU VAL LEU SEQRES 15 B 207 LYS THR ASP SER CYS ASP VAL ASN ASP CYS VAL GLN GLN SEQRES 16 B 207 VAL VAL GLU LEU LEU GLN GLU ARG ASP ILE VAL PRO HET MG A 301 1 HET PO4 A 401 5 HET PO4 A 403 5 HET PPS A1100 31 HET ADP A1300 46 HET MG B 302 1 HET PO4 B 402 5 HET PO4 B 404 5 HET PPS B1200 31 HET ADP B1400 46 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM PPS 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 PO4 4(O4 P 3-) FORMUL 6 PPS 2(C10 H15 N5 O13 P2 S) FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 13 HOH *197(H2 O) HELIX 1 1 SER A 36 VAL A 44 1 9 HELIX 2 2 GLY A 64 HIS A 79 1 16 HELIX 3 3 GLY A 88 ARG A 92 1 5 HELIX 4 4 SER A 102 GLY A 124 1 23 HELIX 5 5 TYR A 135 ALA A 149 1 15 HELIX 6 6 PRO A 161 ASP A 169 1 9 HELIX 7 7 GLY A 172 ALA A 179 1 8 HELIX 8 8 ASP A 208 ARG A 223 1 16 HELIX 9 9 SER B 36 GLY B 45 1 10 HELIX 10 10 GLY B 64 HIS B 79 1 16 HELIX 11 11 GLY B 88 ARG B 92 1 5 HELIX 12 12 SER B 102 ALA B 123 1 22 HELIX 13 13 TYR B 135 ALA B 149 1 15 HELIX 14 14 PRO B 161 ASP B 169 1 9 HELIX 15 15 GLY B 172 GLY B 180 1 9 HELIX 16 16 ASP B 208 ARG B 223 1 16 SHEET 1 A 5 CYS A 83 ASP A 87 0 SHEET 2 A 5 VAL A 126 SER A 130 1 O ILE A 128 N LEU A 86 SHEET 3 A 5 CYS A 53 THR A 58 1 N VAL A 55 O CYS A 127 SHEET 4 A 5 PHE A 153 ASP A 159 1 O VAL A 156 N TRP A 56 SHEET 5 A 5 LEU A 200 LYS A 203 1 O LEU A 202 N PHE A 157 SHEET 1 B 5 CYS B 83 ASP B 87 0 SHEET 2 B 5 VAL B 126 SER B 130 1 O ILE B 128 N LEU B 86 SHEET 3 B 5 CYS B 53 THR B 58 1 N VAL B 55 O CYS B 127 SHEET 4 B 5 PHE B 153 VAL B 158 1 O VAL B 156 N TRP B 56 SHEET 5 B 5 LEU B 200 LEU B 202 1 O LEU B 202 N PHE B 157 LINK OG1 THR A 66 MG MG A 301 1555 1555 1.98 LINK MG MG A 301 O3P PPS A1100 1555 1555 1.92 LINK MG MG A 301 O2B ADP A1300 1555 1555 1.99 LINK MG MG A 301 O HOH A1327 1555 1555 2.14 LINK MG MG A 301 O HOH A1358 1555 1555 2.06 LINK MG MG A 301 O HOH A1363 1555 1555 2.19 LINK OG1 THR B 66 MG MG B 302 1555 1555 2.15 LINK MG MG B 302 O3P PPS B1200 1555 1555 1.97 LINK MG MG B 302 O2B ADP B1400 1555 1555 2.07 LINK MG MG B 302 O HOH B1410 1555 1555 2.08 LINK MG MG B 302 O HOH B1438 1555 1555 2.14 LINK MG MG B 302 O HOH B1460 1555 1555 2.06 SITE 1 AC1 6 THR A 66 PPS A1100 ADP A1300 HOH A1327 SITE 2 AC1 6 HOH A1358 HOH A1363 SITE 1 AC2 7 THR B 66 ASP B 87 PPS B1200 ADP B1400 SITE 2 AC2 7 HOH B1410 HOH B1438 HOH B1460 SITE 1 AC3 8 ARG A 139 ASN A 140 GLU A 155 PRO A 195 SITE 2 AC3 8 GLU A 196 ALA A 197 PRO A 198 HOH A1365 SITE 1 AC4 9 ARG B 139 ASN B 140 GLU B 155 PRO B 195 SITE 2 AC4 9 GLU B 196 ALA B 197 PRO B 198 HOH B1449 SITE 3 AC4 9 HOH B1497 SITE 1 AC5 5 PRO A 161 HIS A 163 TYR B 75 HIS B 79 SITE 2 AC5 5 GLN B 214 SITE 1 AC6 5 TYR A 75 HIS A 79 GLN A 214 PRO B 161 SITE 2 AC6 5 HIS B 163 SITE 1 AC7 30 SER A 61 LYS A 65 GLY A 88 ASP A 89 SITE 2 AC7 30 ARG A 92 PHE A 101 ARG A 106 ASN A 109 SITE 3 AC7 30 PHE A 131 ILE A 132 SER A 133 PRO A 134 SITE 4 AC7 30 LYS A 171 LEU A 173 LYS A 183 GLY A 184 SITE 5 AC7 30 PHE A 185 THR A 186 MG A 301 ADP A1300 SITE 6 AC7 30 HOH A1327 HOH A1329 HOH A1339 HOH A1358 SITE 7 AC7 30 HOH A1363 THR B 26 ASN B 27 VAL B 28 SITE 8 AC7 30 HOH B1407 HOH B1452 SITE 1 AC8 30 THR A 26 ASN A 27 VAL A 28 HOH A1351 SITE 2 AC8 30 SER B 61 LYS B 65 GLY B 88 ASP B 89 SITE 3 AC8 30 ARG B 92 PHE B 101 ARG B 106 ASN B 109 SITE 4 AC8 30 PHE B 131 ILE B 132 SER B 133 PRO B 134 SITE 5 AC8 30 LYS B 171 LEU B 173 LYS B 183 GLY B 184 SITE 6 AC8 30 PHE B 185 THR B 186 MG B 302 ADP B1400 SITE 7 AC8 30 HOH B1417 HOH B1432 HOH B1438 HOH B1458 SITE 8 AC8 30 HOH B1459 HOH B1460 SITE 1 AC9 21 LEU A 60 GLY A 62 ALA A 63 GLY A 64 SITE 2 AC9 21 LYS A 65 THR A 66 THR A 67 VAL A 68 SITE 3 AC9 21 ARG A 168 VAL A 170 THR A 204 CYS A 207 SITE 4 AC9 21 ASP A 208 VAL A 209 CYS A 212 MG A 301 SITE 5 AC9 21 PPS A1100 HOH A1327 HOH A1343 HOH A1358 SITE 6 AC9 21 HOH A1373 SITE 1 BC1 24 LEU B 60 SER B 61 GLY B 62 ALA B 63 SITE 2 BC1 24 GLY B 64 LYS B 65 THR B 66 THR B 67 SITE 3 BC1 24 VAL B 68 ARG B 168 VAL B 170 THR B 204 SITE 4 BC1 24 CYS B 207 ASP B 208 VAL B 209 CYS B 212 SITE 5 BC1 24 MG B 302 PPS B1200 HOH B1410 HOH B1438 SITE 6 BC1 24 HOH B1457 HOH B1458 HOH B1478 HOH B1495 CRYST1 51.400 63.320 61.690 90.00 114.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019455 0.000000 0.008817 0.00000 SCALE2 0.000000 0.015793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017797 0.00000