HEADER ISOMERASE 05-JAN-07 2OG9 TITLE CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME TITLE 2 FROM POLAROMONAS SP. JS666 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLAROMONAS SP.; SOURCE 3 ORGANISM_TAXID: 296591; SOURCE 4 STRAIN: JS666; SOURCE 5 ATCC: BAA-500; SOURCE 6 GENE: BPRO_0435; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS NYSGXRC, PROTEIN STRUCTURE INITIATIVE (PSI) II, PSI-2, 9382A, KEYWDS 2 MANDELATE RACEMASE, ENOLASE SUPERFAMILY, TIM BARREL, STRUCTURAL KEYWDS 3 GENOMICS, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 27-DEC-23 2OG9 1 REMARK REVDAT 5 03-FEB-21 2OG9 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 13-JUL-11 2OG9 1 VERSN REVDAT 3 24-FEB-09 2OG9 1 VERSN REVDAT 2 29-APR-08 2OG9 1 COMPND REVDAT 1 27-FEB-07 2OG9 0 JRNL AUTH D.KUMARAN,V.SRIDHAR,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING JRNL TITL 2 ENZYME FROM POLAROMONAS SP. JS666 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3210944.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 60304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2436 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9560 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 444 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 2.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.780 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.470 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 46.64 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39200 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.70800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.70800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.71700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.70800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.70800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.71700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 66.70800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.70800 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.71700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 66.70800 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 66.70800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.71700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 90930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 133.41600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 133.41600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 133.41600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 133.41600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 SER A 32 REMARK 465 ASP A 33 REMARK 465 ALA A 34 REMARK 465 LYS A 35 REMARK 465 VAL A 36 REMARK 465 LEU A 37 REMARK 465 THR A 38 REMARK 465 GLY A 39 REMARK 465 ARG A 40 REMARK 465 GLN A 41 REMARK 465 LYS A 42 REMARK 465 PRO A 43 REMARK 465 GLU A 386 REMARK 465 GLY A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LYS B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 SER B 32 REMARK 465 ASP B 33 REMARK 465 ALA B 34 REMARK 465 LYS B 35 REMARK 465 VAL B 36 REMARK 465 LEU B 37 REMARK 465 THR B 38 REMARK 465 GLY B 39 REMARK 465 ARG B 40 REMARK 465 GLN B 41 REMARK 465 LYS B 42 REMARK 465 PRO B 43 REMARK 465 GLU B 386 REMARK 465 GLY B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 70 -156.73 81.14 REMARK 500 MSE A 286 65.15 -119.13 REMARK 500 PHE A 316 -169.22 65.40 REMARK 500 ALA A 317 66.66 26.24 REMARK 500 GLU A 331 108.64 -51.05 REMARK 500 ASP B 13 -173.80 -177.95 REMARK 500 ARG B 70 -154.87 76.44 REMARK 500 PRO B 188 -39.87 -38.22 REMARK 500 MSE B 286 64.93 -117.91 REMARK 500 PHE B 316 -170.02 71.55 REMARK 500 ALA B 317 70.48 20.16 REMARK 500 GLU B 331 109.83 -52.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 254 O REMARK 620 2 PHE A 257 O 92.9 REMARK 620 3 HOH A 402 O 81.6 76.1 REMARK 620 4 HOH A 403 O 78.0 152.2 76.7 REMARK 620 5 HOH A 404 O 87.5 83.1 155.9 122.1 REMARK 620 6 HOH A 405 O 168.1 85.0 86.4 98.5 103.8 REMARK 620 7 HOH A 567 O 105.7 136.6 144.2 71.0 59.6 83.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 254 O REMARK 620 2 PHE B 257 O 95.5 REMARK 620 3 HOH B 403 O 87.2 79.6 REMARK 620 4 HOH B 404 O 81.2 161.2 81.7 REMARK 620 5 HOH B 405 O 85.6 80.8 158.3 117.2 REMARK 620 6 HOH B 406 O 171.6 91.3 89.2 90.8 100.4 REMARK 620 7 HOH B 573 O 105.7 134.2 140.2 64.0 61.5 72.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9382A RELATED DB: TARGETDB DBREF 2OG9 A 4 385 UNP Q12GE3 Q12GE3_POLSJ 2 383 DBREF 2OG9 B 4 385 UNP Q12GE3 Q12GE3_POLSJ 2 383 SEQADV 2OG9 MSE A 1 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 SER A 2 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 LEU A 3 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 MSE A 44 UNP Q12GE3 MET 42 MODIFIED RESIDUE SEQADV 2OG9 MSE A 167 UNP Q12GE3 MET 165 MODIFIED RESIDUE SEQADV 2OG9 MSE A 211 UNP Q12GE3 MET 209 MODIFIED RESIDUE SEQADV 2OG9 MSE A 226 UNP Q12GE3 MET 224 MODIFIED RESIDUE SEQADV 2OG9 MSE A 266 UNP Q12GE3 MET 264 MODIFIED RESIDUE SEQADV 2OG9 MSE A 286 UNP Q12GE3 MET 284 MODIFIED RESIDUE SEQADV 2OG9 MSE A 311 UNP Q12GE3 MET 309 MODIFIED RESIDUE SEQADV 2OG9 MSE A 318 UNP Q12GE3 MET 316 MODIFIED RESIDUE SEQADV 2OG9 MSE A 355 UNP Q12GE3 MET 353 MODIFIED RESIDUE SEQADV 2OG9 GLU A 386 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 GLY A 387 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS A 388 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS A 389 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS A 390 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS A 391 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS A 392 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS A 393 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 MSE B 1 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 SER B 2 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 LEU B 3 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 MSE B 44 UNP Q12GE3 MET 42 MODIFIED RESIDUE SEQADV 2OG9 MSE B 167 UNP Q12GE3 MET 165 MODIFIED RESIDUE SEQADV 2OG9 MSE B 211 UNP Q12GE3 MET 209 MODIFIED RESIDUE SEQADV 2OG9 MSE B 226 UNP Q12GE3 MET 224 MODIFIED RESIDUE SEQADV 2OG9 MSE B 266 UNP Q12GE3 MET 264 MODIFIED RESIDUE SEQADV 2OG9 MSE B 286 UNP Q12GE3 MET 284 MODIFIED RESIDUE SEQADV 2OG9 MSE B 311 UNP Q12GE3 MET 309 MODIFIED RESIDUE SEQADV 2OG9 MSE B 318 UNP Q12GE3 MET 316 MODIFIED RESIDUE SEQADV 2OG9 MSE B 355 UNP Q12GE3 MET 353 MODIFIED RESIDUE SEQADV 2OG9 GLU B 386 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 GLY B 387 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS B 388 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS B 389 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS B 390 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS B 391 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS B 392 UNP Q12GE3 CLONING ARTIFACT SEQADV 2OG9 HIS B 393 UNP Q12GE3 CLONING ARTIFACT SEQRES 1 A 393 MSE SER LEU LYS THR THR THR SER SER THR PRO SER ASP SEQRES 2 A 393 ARG ILE THR TRP VAL ARG ILE SER SER CYS TYR LEU PRO SEQRES 3 A 393 LEU ALA THR PRO ILE SER ASP ALA LYS VAL LEU THR GLY SEQRES 4 A 393 ARG GLN LYS PRO MSE THR GLU ILE ALA ILE LEU PHE ALA SEQRES 5 A 393 GLU ILE GLU THR ALA GLY GLY HIS GLN GLY LEU GLY PHE SEQRES 6 A 393 SER TYR SER LYS ARG ALA GLY GLY PRO GLY GLN PHE ALA SEQRES 7 A 393 HIS ALA ARG GLU ILE ALA PRO ALA LEU ILE GLY GLU ASP SEQRES 8 A 393 PRO SER ASP ILE ALA LYS LEU TRP ASP LYS LEU CYS TRP SEQRES 9 A 393 ALA GLY ALA SER ALA GLY ARG SER GLY LEU SER THR GLN SEQRES 10 A 393 ALA ILE GLY ALA PHE ASP VAL ALA LEU TRP ASP LEU LYS SEQRES 11 A 393 ALA LYS ARG ALA GLY LEU SER LEU ALA LYS LEU LEU GLY SEQRES 12 A 393 SER TYR ARG ASP SER VAL ARG CYS TYR ASN THR SER GLY SEQRES 13 A 393 GLY PHE LEU HIS THR PRO ILE ASP GLN LEU MSE VAL ASN SEQRES 14 A 393 ALA SER ALA SER ILE GLU ARG GLY ILE GLY GLY ILE LYS SEQRES 15 A 393 LEU LYS VAL GLY GLN PRO ASP GLY ALA LEU ASP ILE ALA SEQRES 16 A 393 ARG VAL THR ALA VAL ARG LYS HIS LEU GLY ASP ALA VAL SEQRES 17 A 393 PRO LEU MSE VAL ASP ALA ASN GLN GLN TRP ASP ARG PRO SEQRES 18 A 393 THR ALA GLN ARG MSE CYS ARG ILE PHE GLU PRO PHE ASN SEQRES 19 A 393 LEU VAL TRP ILE GLU GLU PRO LEU ASP ALA TYR ASP HIS SEQRES 20 A 393 GLU GLY HIS ALA ALA LEU ALA LEU GLN PHE ASP THR PRO SEQRES 21 A 393 ILE ALA THR GLY GLU MSE LEU THR SER ALA ALA GLU HIS SEQRES 22 A 393 GLY ASP LEU ILE ARG HIS ARG ALA ALA ASP TYR LEU MSE SEQRES 23 A 393 PRO ASP ALA PRO ARG VAL GLY GLY ILE THR PRO PHE LEU SEQRES 24 A 393 LYS ILE ALA SER LEU ALA GLU HIS ALA GLY LEU MSE LEU SEQRES 25 A 393 ALA PRO HIS PHE ALA MSE GLU LEU HIS VAL HIS LEU ALA SEQRES 26 A 393 ALA ALA TYR PRO ARG GLU PRO TRP VAL GLU HIS PHE GLU SEQRES 27 A 393 TRP LEU GLU PRO LEU PHE ASN GLU ARG ILE GLU ILE ARG SEQRES 28 A 393 ASP GLY ARG MSE LEU VAL PRO THR ARG PRO GLY LEU GLY SEQRES 29 A 393 LEU THR LEU SER GLY GLN VAL LYS ALA TRP THR ARG GLU SEQRES 30 A 393 GLU ALA GLN VAL GLY THR ARG PRO GLU GLY HIS HIS HIS SEQRES 31 A 393 HIS HIS HIS SEQRES 1 B 393 MSE SER LEU LYS THR THR THR SER SER THR PRO SER ASP SEQRES 2 B 393 ARG ILE THR TRP VAL ARG ILE SER SER CYS TYR LEU PRO SEQRES 3 B 393 LEU ALA THR PRO ILE SER ASP ALA LYS VAL LEU THR GLY SEQRES 4 B 393 ARG GLN LYS PRO MSE THR GLU ILE ALA ILE LEU PHE ALA SEQRES 5 B 393 GLU ILE GLU THR ALA GLY GLY HIS GLN GLY LEU GLY PHE SEQRES 6 B 393 SER TYR SER LYS ARG ALA GLY GLY PRO GLY GLN PHE ALA SEQRES 7 B 393 HIS ALA ARG GLU ILE ALA PRO ALA LEU ILE GLY GLU ASP SEQRES 8 B 393 PRO SER ASP ILE ALA LYS LEU TRP ASP LYS LEU CYS TRP SEQRES 9 B 393 ALA GLY ALA SER ALA GLY ARG SER GLY LEU SER THR GLN SEQRES 10 B 393 ALA ILE GLY ALA PHE ASP VAL ALA LEU TRP ASP LEU LYS SEQRES 11 B 393 ALA LYS ARG ALA GLY LEU SER LEU ALA LYS LEU LEU GLY SEQRES 12 B 393 SER TYR ARG ASP SER VAL ARG CYS TYR ASN THR SER GLY SEQRES 13 B 393 GLY PHE LEU HIS THR PRO ILE ASP GLN LEU MSE VAL ASN SEQRES 14 B 393 ALA SER ALA SER ILE GLU ARG GLY ILE GLY GLY ILE LYS SEQRES 15 B 393 LEU LYS VAL GLY GLN PRO ASP GLY ALA LEU ASP ILE ALA SEQRES 16 B 393 ARG VAL THR ALA VAL ARG LYS HIS LEU GLY ASP ALA VAL SEQRES 17 B 393 PRO LEU MSE VAL ASP ALA ASN GLN GLN TRP ASP ARG PRO SEQRES 18 B 393 THR ALA GLN ARG MSE CYS ARG ILE PHE GLU PRO PHE ASN SEQRES 19 B 393 LEU VAL TRP ILE GLU GLU PRO LEU ASP ALA TYR ASP HIS SEQRES 20 B 393 GLU GLY HIS ALA ALA LEU ALA LEU GLN PHE ASP THR PRO SEQRES 21 B 393 ILE ALA THR GLY GLU MSE LEU THR SER ALA ALA GLU HIS SEQRES 22 B 393 GLY ASP LEU ILE ARG HIS ARG ALA ALA ASP TYR LEU MSE SEQRES 23 B 393 PRO ASP ALA PRO ARG VAL GLY GLY ILE THR PRO PHE LEU SEQRES 24 B 393 LYS ILE ALA SER LEU ALA GLU HIS ALA GLY LEU MSE LEU SEQRES 25 B 393 ALA PRO HIS PHE ALA MSE GLU LEU HIS VAL HIS LEU ALA SEQRES 26 B 393 ALA ALA TYR PRO ARG GLU PRO TRP VAL GLU HIS PHE GLU SEQRES 27 B 393 TRP LEU GLU PRO LEU PHE ASN GLU ARG ILE GLU ILE ARG SEQRES 28 B 393 ASP GLY ARG MSE LEU VAL PRO THR ARG PRO GLY LEU GLY SEQRES 29 B 393 LEU THR LEU SER GLY GLN VAL LYS ALA TRP THR ARG GLU SEQRES 30 B 393 GLU ALA GLN VAL GLY THR ARG PRO GLU GLY HIS HIS HIS SEQRES 31 B 393 HIS HIS HIS MODRES 2OG9 MSE A 44 MET SELENOMETHIONINE MODRES 2OG9 MSE A 167 MET SELENOMETHIONINE MODRES 2OG9 MSE A 211 MET SELENOMETHIONINE MODRES 2OG9 MSE A 226 MET SELENOMETHIONINE MODRES 2OG9 MSE A 266 MET SELENOMETHIONINE MODRES 2OG9 MSE A 286 MET SELENOMETHIONINE MODRES 2OG9 MSE A 311 MET SELENOMETHIONINE MODRES 2OG9 MSE A 318 MET SELENOMETHIONINE MODRES 2OG9 MSE A 355 MET SELENOMETHIONINE MODRES 2OG9 MSE B 44 MET SELENOMETHIONINE MODRES 2OG9 MSE B 167 MET SELENOMETHIONINE MODRES 2OG9 MSE B 211 MET SELENOMETHIONINE MODRES 2OG9 MSE B 226 MET SELENOMETHIONINE MODRES 2OG9 MSE B 266 MET SELENOMETHIONINE MODRES 2OG9 MSE B 286 MET SELENOMETHIONINE MODRES 2OG9 MSE B 311 MET SELENOMETHIONINE MODRES 2OG9 MSE B 318 MET SELENOMETHIONINE MODRES 2OG9 MSE B 355 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 167 8 HET MSE A 211 8 HET MSE A 226 8 HET MSE A 266 8 HET MSE A 286 8 HET MSE A 311 8 HET MSE A 318 8 HET MSE A 355 8 HET MSE B 44 8 HET MSE B 167 8 HET MSE B 211 8 HET MSE B 226 8 HET MSE B 266 8 HET MSE B 286 8 HET MSE B 311 8 HET MSE B 318 8 HET MSE B 355 8 HET CA A 401 1 HET CA B 402 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *359(H2 O) HELIX 1 1 GLY A 72 ALA A 84 1 13 HELIX 2 2 PRO A 85 ILE A 88 5 4 HELIX 3 3 ASP A 94 ALA A 105 1 12 HELIX 4 4 GLY A 106 GLY A 110 5 5 HELIX 5 5 GLY A 113 ALA A 134 1 22 HELIX 6 6 SER A 137 GLY A 143 1 7 HELIX 7 7 PRO A 162 ARG A 176 1 15 HELIX 8 8 ASP A 189 GLY A 205 1 17 HELIX 9 9 ASP A 219 GLU A 231 1 13 HELIX 10 10 PRO A 232 ASN A 234 5 3 HELIX 11 11 ASP A 246 PHE A 257 1 12 HELIX 12 12 SER A 269 HIS A 279 1 11 HELIX 13 13 ASP A 288 GLY A 293 1 6 HELIX 14 14 GLY A 294 ALA A 308 1 15 HELIX 15 15 ALA A 317 ALA A 327 1 11 HELIX 16 16 LEU A 340 PHE A 344 5 5 HELIX 17 17 GLY A 369 TRP A 374 1 6 HELIX 18 18 GLY B 72 ALA B 84 1 13 HELIX 19 19 PRO B 85 ILE B 88 5 4 HELIX 20 20 ASP B 94 GLY B 106 1 13 HELIX 21 21 ALA B 107 GLY B 110 5 4 HELIX 22 22 GLY B 113 ALA B 134 1 22 HELIX 23 23 SER B 137 GLY B 143 1 7 HELIX 24 24 PRO B 162 ARG B 176 1 15 HELIX 25 25 ASP B 189 GLY B 205 1 17 HELIX 26 26 ASP B 219 GLU B 231 1 13 HELIX 27 27 PRO B 232 ASN B 234 5 3 HELIX 28 28 ASP B 246 PHE B 257 1 12 HELIX 29 29 SER B 269 HIS B 279 1 11 HELIX 30 30 ASP B 288 GLY B 293 1 6 HELIX 31 31 GLY B 294 ALA B 308 1 15 HELIX 32 32 ALA B 317 ALA B 327 1 11 HELIX 33 33 LEU B 340 PHE B 344 5 5 HELIX 34 34 GLY B 369 TRP B 374 1 6 SHEET 1 A 4 GLN A 61 LYS A 69 0 SHEET 2 A 4 GLU A 46 THR A 56 -1 N ILE A 54 O GLY A 62 SHEET 3 A 4 ILE A 15 PRO A 26 -1 N CYS A 23 O ILE A 49 SHEET 4 A 4 THR A 375 GLY A 382 -1 O GLU A 377 N SER A 22 SHEET 1 B 4 TRP A 333 GLU A 335 0 SHEET 2 B 4 SER A 148 TYR A 152 1 N ARG A 150 O VAL A 334 SHEET 3 B 4 ARG A 354 LEU A 356 -1 O MSE A 355 N VAL A 149 SHEET 4 B 4 ILE A 350 ARG A 351 -1 N ARG A 351 O ARG A 354 SHEET 1 C 6 ILE A 181 LYS A 184 0 SHEET 2 C 6 LEU A 210 ASP A 213 1 O MSE A 211 N LEU A 183 SHEET 3 C 6 ILE A 238 GLU A 239 1 O GLU A 239 N VAL A 212 SHEET 4 C 6 ILE A 261 THR A 263 1 O ALA A 262 N ILE A 238 SHEET 5 C 6 TYR A 284 LEU A 285 1 N TYR A 284 O ILE A 261 SHEET 6 C 6 MSE A 311 LEU A 312 1 O MSE A 311 N LEU A 285 SHEET 1 D 4 GLN B 61 LYS B 69 0 SHEET 2 D 4 GLU B 46 THR B 56 -1 N LEU B 50 O SER B 66 SHEET 3 D 4 ILE B 15 PRO B 26 -1 N CYS B 23 O ILE B 49 SHEET 4 D 4 THR B 375 GLY B 382 -1 O GLU B 377 N SER B 22 SHEET 1 E 4 TRP B 333 GLU B 335 0 SHEET 2 E 4 SER B 148 TYR B 152 1 N ARG B 150 O VAL B 334 SHEET 3 E 4 ARG B 354 LEU B 356 -1 O MSE B 355 N VAL B 149 SHEET 4 E 4 ILE B 350 ARG B 351 -1 N ARG B 351 O ARG B 354 SHEET 1 F 6 ILE B 181 LYS B 184 0 SHEET 2 F 6 LEU B 210 ASP B 213 1 O MSE B 211 N LEU B 183 SHEET 3 F 6 ILE B 238 GLU B 239 1 O GLU B 239 N VAL B 212 SHEET 4 F 6 ILE B 261 THR B 263 1 O ALA B 262 N ILE B 238 SHEET 5 F 6 TYR B 284 LEU B 285 1 N TYR B 284 O ILE B 261 SHEET 6 F 6 MSE B 311 LEU B 312 1 O MSE B 311 N LEU B 285 LINK C MSE A 44 N THR A 45 1555 1555 1.33 LINK C LEU A 166 N MSE A 167 1555 1555 1.33 LINK C MSE A 167 N VAL A 168 1555 1555 1.33 LINK C LEU A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N VAL A 212 1555 1555 1.33 LINK C ARG A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N CYS A 227 1555 1555 1.33 LINK C GLU A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N LEU A 267 1555 1555 1.33 LINK C LEU A 285 N MSE A 286 1555 1555 1.33 LINK C MSE A 286 N PRO A 287 1555 1555 1.34 LINK C LEU A 310 N MSE A 311 1555 1555 1.33 LINK C MSE A 311 N LEU A 312 1555 1555 1.33 LINK C ALA A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N GLU A 319 1555 1555 1.33 LINK C ARG A 354 N MSE A 355 1555 1555 1.33 LINK C MSE A 355 N LEU A 356 1555 1555 1.33 LINK C MSE B 44 N THR B 45 1555 1555 1.33 LINK C LEU B 166 N MSE B 167 1555 1555 1.33 LINK C MSE B 167 N VAL B 168 1555 1555 1.33 LINK C LEU B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N VAL B 212 1555 1555 1.33 LINK C ARG B 225 N MSE B 226 1555 1555 1.33 LINK C MSE B 226 N CYS B 227 1555 1555 1.33 LINK C GLU B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N LEU B 267 1555 1555 1.33 LINK C LEU B 285 N MSE B 286 1555 1555 1.33 LINK C MSE B 286 N PRO B 287 1555 1555 1.34 LINK C LEU B 310 N MSE B 311 1555 1555 1.33 LINK C MSE B 311 N LEU B 312 1555 1555 1.33 LINK C ALA B 317 N MSE B 318 1555 1555 1.33 LINK C MSE B 318 N GLU B 319 1555 1555 1.33 LINK C ARG B 354 N MSE B 355 1555 1555 1.32 LINK C MSE B 355 N LEU B 356 1555 1555 1.33 LINK O ALA A 254 CA CA A 401 1555 1555 2.29 LINK O PHE A 257 CA CA A 401 1555 1555 2.41 LINK CA CA A 401 O HOH A 402 1555 1555 2.46 LINK CA CA A 401 O HOH A 403 1555 1555 2.42 LINK CA CA A 401 O HOH A 404 1555 1555 2.38 LINK CA CA A 401 O HOH A 405 1555 1555 2.32 LINK CA CA A 401 O HOH A 567 1555 1555 2.46 LINK O ALA B 254 CA CA B 402 1555 1555 2.23 LINK O PHE B 257 CA CA B 402 1555 1555 2.35 LINK CA CA B 402 O HOH B 403 1555 1555 2.34 LINK CA CA B 402 O HOH B 404 1555 1555 2.47 LINK CA CA B 402 O HOH B 405 1555 1555 2.46 LINK CA CA B 402 O HOH B 406 1555 1555 2.32 LINK CA CA B 402 O HOH B 573 1555 1555 2.58 SITE 1 AC1 7 ALA A 254 PHE A 257 HOH A 402 HOH A 403 SITE 2 AC1 7 HOH A 404 HOH A 405 HOH A 567 SITE 1 AC2 7 ALA B 254 PHE B 257 HOH B 403 HOH B 404 SITE 2 AC2 7 HOH B 405 HOH B 406 HOH B 573 CRYST1 133.416 133.416 87.434 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011437 0.00000