HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JAN-07 2OGF TITLE CRYSTAL STRUCTURE OF PROTEIN MJ0408 FROM METHANOCOCCUS JANNASCHII, TITLE 2 PFAM DUF372 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN MJ0408; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ0408; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BS-PSGX4 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, NYSGXRC, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 10 13-NOV-24 2OGF 1 REMARK REVDAT 9 15-NOV-23 2OGF 1 REMARK REVDAT 8 30-AUG-23 2OGF 1 REMARK REVDAT 7 03-FEB-21 2OGF 1 AUTHOR JRNL REMARK SEQADV REVDAT 7 2 1 LINK REVDAT 6 14-NOV-18 2OGF 1 AUTHOR REVDAT 5 18-OCT-17 2OGF 1 REMARK REVDAT 4 13-JUL-11 2OGF 1 VERSN REVDAT 3 24-FEB-09 2OGF 1 VERSN REVDAT 2 22-MAY-07 2OGF 1 AUTHOR REVDAT 1 16-JAN-07 2OGF 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN MJ0408 FROM JRNL TITL 2 METHANOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 37966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2036 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4233 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5701 ; 1.446 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 5.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;31.519 ;24.715 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 849 ;13.768 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.872 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3105 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1984 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2893 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.089 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2582 ; 0.706 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4032 ; 1.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 2.073 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1662 ; 3.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 UNKNOWN EXTRA DENSITY FOUND, WHICH IS MODELED AS REMARK 3 8-OXOGUANINE SOLELY BASED ON THE OBSERVED DENSITY, WITHOUT ANY REMARK 3 OTHER BIOCHEMICAL DATA. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2OGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5403 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IEC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG-3350, TRIS-HCL, 0.2 M AMMONIUM REMARK 280 SULFATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.13500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A TETRAMER. THERE IS ONE BIOLOGICAL REMARK 300 UNIT IN THE ASYMMETRIC UNIT (CHAINS A, B,C & D). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 121 REMARK 465 GLU C 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE D 58 SE MSE D 58 CE -0.635 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 95 -115.00 51.64 REMARK 500 ASN B 95 -112.05 53.00 REMARK 500 ASN C 95 -114.08 54.21 REMARK 500 ASN D 95 -113.20 56.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXG D 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXG B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10163A RELATED DB: TARGETDB DBREF 2OGF A 2 121 UNP Q57851 Y408_METJA 2 121 DBREF 2OGF B 2 121 UNP Q57851 Y408_METJA 2 121 DBREF 2OGF C 2 121 UNP Q57851 Y408_METJA 2 121 DBREF 2OGF D 2 121 UNP Q57851 Y408_METJA 2 121 SEQADV 2OGF SER A 0 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF LEU A 1 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF MSE A 58 UNP Q57851 MET 58 MODIFIED RESIDUE SEQADV 2OGF MSE A 85 UNP Q57851 MET 85 MODIFIED RESIDUE SEQADV 2OGF MSE A 114 UNP Q57851 MET 114 MODIFIED RESIDUE SEQADV 2OGF SER B 0 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF LEU B 1 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF MSE B 58 UNP Q57851 MET 58 MODIFIED RESIDUE SEQADV 2OGF MSE B 85 UNP Q57851 MET 85 MODIFIED RESIDUE SEQADV 2OGF MSE B 114 UNP Q57851 MET 114 MODIFIED RESIDUE SEQADV 2OGF SER C 0 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF LEU C 1 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF MSE C 58 UNP Q57851 MET 58 MODIFIED RESIDUE SEQADV 2OGF MSE C 85 UNP Q57851 MET 85 MODIFIED RESIDUE SEQADV 2OGF MSE C 114 UNP Q57851 MET 114 MODIFIED RESIDUE SEQADV 2OGF SER D 0 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF LEU D 1 UNP Q57851 CLONING ARTIFACT SEQADV 2OGF MSE D 58 UNP Q57851 MET 58 MODIFIED RESIDUE SEQADV 2OGF MSE D 85 UNP Q57851 MET 85 MODIFIED RESIDUE SEQADV 2OGF MSE D 114 UNP Q57851 MET 114 MODIFIED RESIDUE SEQRES 1 A 122 SER LEU ARG VAL GLU GLU THR GLU VAL PHE LYS LYS TYR SEQRES 2 A 122 PHE LYS ASN LEU THR ASP ARG GLU ARG ALA VAL PHE GLU SEQRES 3 A 122 GLY GLY ILE THR LEU GLY ALA LEU PHE HIS GLN PHE VAL SEQRES 4 A 122 GLY THR PRO VAL SER LYS TYR ASN LYS GLU SER LEU GLU SEQRES 5 A 122 ARG ALA ILE GLU GLU ALA MSE LYS ASN GLN PRO CYS VAL SEQRES 6 A 122 TYR ASP ILE LYS VAL LYS ILE ARG ASN VAL GLY GLU LYS SEQRES 7 A 122 TYR VAL SER LEU ASP GLY LYS MSE LEU ASP VAL ASP LEU SEQRES 8 A 122 LYS ILE LYS ILE ASN LYS THR VAL ALA HIS LEU LYS LEU SEQRES 9 A 122 GLU TYR ILE PRO GLU ILE ASP TYR PRO LEU MSE TYR VAL SEQRES 10 A 122 LYS LYS PHE GLU GLU SEQRES 1 B 122 SER LEU ARG VAL GLU GLU THR GLU VAL PHE LYS LYS TYR SEQRES 2 B 122 PHE LYS ASN LEU THR ASP ARG GLU ARG ALA VAL PHE GLU SEQRES 3 B 122 GLY GLY ILE THR LEU GLY ALA LEU PHE HIS GLN PHE VAL SEQRES 4 B 122 GLY THR PRO VAL SER LYS TYR ASN LYS GLU SER LEU GLU SEQRES 5 B 122 ARG ALA ILE GLU GLU ALA MSE LYS ASN GLN PRO CYS VAL SEQRES 6 B 122 TYR ASP ILE LYS VAL LYS ILE ARG ASN VAL GLY GLU LYS SEQRES 7 B 122 TYR VAL SER LEU ASP GLY LYS MSE LEU ASP VAL ASP LEU SEQRES 8 B 122 LYS ILE LYS ILE ASN LYS THR VAL ALA HIS LEU LYS LEU SEQRES 9 B 122 GLU TYR ILE PRO GLU ILE ASP TYR PRO LEU MSE TYR VAL SEQRES 10 B 122 LYS LYS PHE GLU GLU SEQRES 1 C 122 SER LEU ARG VAL GLU GLU THR GLU VAL PHE LYS LYS TYR SEQRES 2 C 122 PHE LYS ASN LEU THR ASP ARG GLU ARG ALA VAL PHE GLU SEQRES 3 C 122 GLY GLY ILE THR LEU GLY ALA LEU PHE HIS GLN PHE VAL SEQRES 4 C 122 GLY THR PRO VAL SER LYS TYR ASN LYS GLU SER LEU GLU SEQRES 5 C 122 ARG ALA ILE GLU GLU ALA MSE LYS ASN GLN PRO CYS VAL SEQRES 6 C 122 TYR ASP ILE LYS VAL LYS ILE ARG ASN VAL GLY GLU LYS SEQRES 7 C 122 TYR VAL SER LEU ASP GLY LYS MSE LEU ASP VAL ASP LEU SEQRES 8 C 122 LYS ILE LYS ILE ASN LYS THR VAL ALA HIS LEU LYS LEU SEQRES 9 C 122 GLU TYR ILE PRO GLU ILE ASP TYR PRO LEU MSE TYR VAL SEQRES 10 C 122 LYS LYS PHE GLU GLU SEQRES 1 D 122 SER LEU ARG VAL GLU GLU THR GLU VAL PHE LYS LYS TYR SEQRES 2 D 122 PHE LYS ASN LEU THR ASP ARG GLU ARG ALA VAL PHE GLU SEQRES 3 D 122 GLY GLY ILE THR LEU GLY ALA LEU PHE HIS GLN PHE VAL SEQRES 4 D 122 GLY THR PRO VAL SER LYS TYR ASN LYS GLU SER LEU GLU SEQRES 5 D 122 ARG ALA ILE GLU GLU ALA MSE LYS ASN GLN PRO CYS VAL SEQRES 6 D 122 TYR ASP ILE LYS VAL LYS ILE ARG ASN VAL GLY GLU LYS SEQRES 7 D 122 TYR VAL SER LEU ASP GLY LYS MSE LEU ASP VAL ASP LEU SEQRES 8 D 122 LYS ILE LYS ILE ASN LYS THR VAL ALA HIS LEU LYS LEU SEQRES 9 D 122 GLU TYR ILE PRO GLU ILE ASP TYR PRO LEU MSE TYR VAL SEQRES 10 D 122 LYS LYS PHE GLU GLU MODRES 2OGF MSE A 58 MET SELENOMETHIONINE MODRES 2OGF MSE A 85 MET SELENOMETHIONINE MODRES 2OGF MSE A 114 MET SELENOMETHIONINE MODRES 2OGF MSE B 58 MET SELENOMETHIONINE MODRES 2OGF MSE B 85 MET SELENOMETHIONINE MODRES 2OGF MSE B 114 MET SELENOMETHIONINE MODRES 2OGF MSE C 58 MET SELENOMETHIONINE MODRES 2OGF MSE C 85 MET SELENOMETHIONINE MODRES 2OGF MSE C 114 MET SELENOMETHIONINE MODRES 2OGF MSE D 58 MET SELENOMETHIONINE MODRES 2OGF MSE D 85 MET SELENOMETHIONINE MODRES 2OGF MSE D 114 MET SELENOMETHIONINE HET MSE A 58 8 HET MSE A 85 8 HET MSE A 114 8 HET MSE B 58 16 HET MSE B 85 8 HET MSE B 114 8 HET MSE C 58 8 HET MSE C 85 8 HET MSE C 114 8 HET MSE D 58 8 HET MSE D 85 8 HET MSE D 114 8 HET OXG A 602 12 HET OXG A 604 12 HET SO4 B 502 5 HET OXG B 603 12 HET GOL C 701 6 HET GOL C 702 6 HET SO4 D 501 5 HET OXG D 601 12 HETNAM MSE SELENOMETHIONINE HETNAM OXG 8-OXOGUANINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 OXG 4(C5 H3 N5 O2) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 13 HOH *339(H2 O) HELIX 1 1 ARG A 2 GLU A 5 5 4 HELIX 2 2 THR A 6 TYR A 12 1 7 HELIX 3 3 THR A 17 VAL A 38 1 22 HELIX 4 4 ASN A 46 ASN A 60 1 15 HELIX 5 5 ASP A 82 LYS A 84 5 3 HELIX 6 6 PRO A 107 ASP A 110 5 4 HELIX 7 7 ARG B 2 GLU B 5 5 4 HELIX 8 8 THR B 6 LYS B 11 1 6 HELIX 9 9 TYR B 12 LYS B 14 5 3 HELIX 10 10 THR B 17 VAL B 38 1 22 HELIX 11 11 ASN B 46 ASN B 60 1 15 HELIX 12 12 ASP B 82 LYS B 84 5 3 HELIX 13 13 PRO B 107 ASP B 110 5 4 HELIX 14 14 ARG C 2 GLU C 5 5 4 HELIX 15 15 THR C 6 TYR C 12 1 7 HELIX 16 16 THR C 17 VAL C 38 1 22 HELIX 17 17 ASN C 46 ASN C 60 1 15 HELIX 18 18 ASP C 82 LYS C 84 5 3 HELIX 19 19 PRO C 107 ASP C 110 5 4 HELIX 20 20 ARG D 2 GLU D 5 5 4 HELIX 21 21 THR D 6 TYR D 12 1 7 HELIX 22 22 THR D 17 VAL D 38 1 22 HELIX 23 23 ASN D 46 ASN D 60 1 15 HELIX 24 24 ASP D 82 LYS D 84 5 3 HELIX 25 25 PRO D 107 ASP D 110 5 4 SHEET 1 A 2 PRO A 41 VAL A 42 0 SHEET 2 A 2 VAL A 79 SER A 80 -1 O VAL A 79 N VAL A 42 SHEET 1 B 4 VAL A 64 ILE A 71 0 SHEET 2 B 4 LEU A 86 ILE A 94 -1 O ASP A 87 N LYS A 70 SHEET 3 B 4 THR A 97 ILE A 106 -1 O LEU A 101 N LEU A 90 SHEET 4 B 4 TYR A 111 GLU A 120 -1 O LYS A 118 N HIS A 100 SHEET 1 C 2 PRO B 41 VAL B 42 0 SHEET 2 C 2 VAL B 79 SER B 80 -1 O VAL B 79 N VAL B 42 SHEET 1 D 4 VAL B 64 ILE B 71 0 SHEET 2 D 4 LEU B 86 ILE B 94 -1 O LYS B 91 N ASP B 66 SHEET 3 D 4 THR B 97 ILE B 106 -1 O LEU B 101 N LEU B 90 SHEET 4 D 4 TYR B 111 GLU B 120 -1 O GLU B 120 N VAL B 98 SHEET 1 E 2 PRO C 41 VAL C 42 0 SHEET 2 E 2 VAL C 79 SER C 80 -1 O VAL C 79 N VAL C 42 SHEET 1 F 4 VAL C 64 ILE C 71 0 SHEET 2 F 4 LEU C 86 ILE C 94 -1 O ASP C 87 N LYS C 70 SHEET 3 F 4 THR C 97 ILE C 106 -1 O LEU C 101 N LEU C 90 SHEET 4 F 4 TYR C 111 GLU C 120 -1 O LYS C 118 N HIS C 100 SHEET 1 G 2 PRO D 41 VAL D 42 0 SHEET 2 G 2 VAL D 79 SER D 80 -1 O VAL D 79 N VAL D 42 SHEET 1 H 4 VAL D 64 ILE D 71 0 SHEET 2 H 4 LEU D 86 ILE D 94 -1 O LYS D 91 N TYR D 65 SHEET 3 H 4 THR D 97 ILE D 106 -1 O LEU D 101 N LEU D 90 SHEET 4 H 4 TYR D 111 GLU D 120 -1 O GLU D 120 N VAL D 98 LINK C ALA A 57 N MSE A 58 1555 1555 1.34 LINK C MSE A 58 N LYS A 59 1555 1555 1.33 LINK C LYS A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N LEU A 86 1555 1555 1.33 LINK C LEU A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N TYR A 115 1555 1555 1.33 LINK C ALA B 57 N AMSE B 58 1555 1555 1.33 LINK C ALA B 57 N BMSE B 58 1555 1555 1.33 LINK C AMSE B 58 N LYS B 59 1555 1555 1.33 LINK C BMSE B 58 N LYS B 59 1555 1555 1.33 LINK C LYS B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N LEU B 86 1555 1555 1.33 LINK C LEU B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N TYR B 115 1555 1555 1.32 LINK C ALA C 57 N MSE C 58 1555 1555 1.33 LINK C MSE C 58 N LYS C 59 1555 1555 1.33 LINK C LYS C 84 N MSE C 85 1555 1555 1.33 LINK C MSE C 85 N LEU C 86 1555 1555 1.33 LINK C LEU C 113 N MSE C 114 1555 1555 1.32 LINK C MSE C 114 N TYR C 115 1555 1555 1.33 LINK C ALA D 57 N MSE D 58 1555 1555 1.33 LINK C MSE D 58 N LYS D 59 1555 1555 1.33 LINK C LYS D 84 N MSE D 85 1555 1555 1.34 LINK C MSE D 85 N LEU D 86 1555 1555 1.34 LINK C LEU D 113 N MSE D 114 1555 1555 1.34 LINK C MSE D 114 N TYR D 115 1555 1555 1.33 SITE 1 AC1 4 LYS D 70 ARG D 72 ASN D 73 HOH D 652 SITE 1 AC2 4 LYS B 70 ARG B 72 ASN B 73 HOH D 657 SITE 1 AC3 11 PHE B 9 PHE B 13 GLU B 25 ILE B 28 SITE 2 AC3 11 PRO B 62 PHE D 34 TYR D 111 PRO D 112 SITE 3 AC3 11 MSE D 114 HOH D 613 HOH D 661 SITE 1 AC4 9 PHE A 13 GLU A 25 ILE A 28 PRO A 62 SITE 2 AC4 9 HOH A 622 TYR C 111 PRO C 112 MSE C 114 SITE 3 AC4 9 HOH D 679 SITE 1 AC5 10 PHE B 34 TYR B 111 PRO B 112 MSE B 114 SITE 2 AC5 10 HOH B 640 PHE D 13 GLU D 25 ILE D 28 SITE 3 AC5 10 PRO D 62 HOH D 606 SITE 1 AC6 9 TYR A 111 PRO A 112 MSE A 114 HOH A 620 SITE 2 AC6 9 PHE C 9 PHE C 13 GLU C 25 ILE C 28 SITE 3 AC6 9 PRO C 62 SITE 1 AC7 5 GLU C 48 GLU C 51 GLU C 55 VAL C 69 SITE 2 AC7 5 LYS C 70 SITE 1 AC8 3 TYR B 45 ARG C 2 LYS C 59 CRYST1 75.693 46.270 79.276 90.00 118.54 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013211 0.000000 0.007185 0.00000 SCALE2 0.000000 0.021612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014359 0.00000