HEADER TRANSCRIPTION 05-JAN-07 2OGG TITLE STRUCTURE OF B. SUBTILIS TREHALOSE REPRESSOR (TRER) EFFECTOR BINDING TITLE 2 DOMAIN CAVEAT 2OGG CHIRALITY ERRORS AT RESIDUE A 119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TREHALOSE OPERON TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EFFECTOR BINDING DOMAIN, RESIDUES 90-238; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: TRER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS GENE REPRESSOR, SUGAR BINDING, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,V.KREJCIRIKOVA,D.BOREK,S.F.MOY,A.JOACHIMIAK,Z.OTWINOWSKI, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 2OGG 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2OGG 1 VERSN REVDAT 3 24-FEB-09 2OGG 1 VERSN REVDAT 2 23-OCT-07 2OGG 1 JRNL REVDAT 1 06-FEB-07 2OGG 0 JRNL AUTH P.REZACOVA,V.KREJCIRIKOVA,D.BOREK,S.F.MOY,A.JOACHIMIAK, JRNL AUTH 2 Z.OTWINOWSKI JRNL TITL THE CRYSTAL STRUCTURE OF THE EFFECTOR-BINDING DOMAIN OF THE JRNL TITL 2 TREHALOSE REPRESSOR TRER FROM BACILLUS SUBTILIS 168 REVEALS JRNL TITL 3 A UNIQUE QUARTERNARY ASSEMBLY. JRNL REF PROTEINS V. 69 679 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17705272 JRNL DOI 10.1002/PROT.21516 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 10126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 990 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1213 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 58.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.803 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1262 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1697 ; 1.412 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 6.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;35.337 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 229 ;17.082 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.926 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.358 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 950 ; 0.025 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 456 ; 0.281 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 820 ; 0.337 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.264 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 718 ; 2.280 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1168 ; 3.730 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 556 ; 7.027 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 529 ; 9.320 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7350 13.1790 22.2690 REMARK 3 T TENSOR REMARK 3 T11: -0.0779 T22: 0.1466 REMARK 3 T33: 0.1914 T12: -0.0665 REMARK 3 T13: 0.0616 T23: -0.2141 REMARK 3 L TENSOR REMARK 3 L11: 16.9599 L22: 17.9261 REMARK 3 L33: 24.2622 L12: -3.0320 REMARK 3 L13: -0.9864 L23: 6.7022 REMARK 3 S TENSOR REMARK 3 S11: -0.7133 S12: -0.3265 S13: -0.1695 REMARK 3 S21: 1.3140 S22: 1.3177 S23: -2.7451 REMARK 3 S31: 0.6988 S32: 1.3356 S33: -0.6043 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1410 23.4340 17.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: -0.0700 REMARK 3 T33: 0.1119 T12: 0.0343 REMARK 3 T13: -0.0600 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 8.8565 L22: 9.6774 REMARK 3 L33: 11.6085 L12: 0.1548 REMARK 3 L13: 1.2246 L23: 4.2590 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.4091 S13: 0.7664 REMARK 3 S21: -1.0629 S22: -0.0312 S23: 0.9688 REMARK 3 S31: -0.7731 S32: -0.6928 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1240 14.9090 17.9760 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: 0.0714 REMARK 3 T33: 0.0668 T12: 0.0103 REMARK 3 T13: -0.0729 T23: -0.1219 REMARK 3 L TENSOR REMARK 3 L11: 15.6388 L22: 3.8168 REMARK 3 L33: 7.6348 L12: -2.2105 REMARK 3 L13: -7.7868 L23: 1.9383 REMARK 3 S TENSOR REMARK 3 S11: -0.2442 S12: -0.3247 S13: -0.1874 REMARK 3 S21: 0.2601 S22: 0.4508 S23: -0.7460 REMARK 3 S31: 0.0226 S32: 1.0925 S33: -0.2065 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3080 15.3580 20.0750 REMARK 3 T TENSOR REMARK 3 T11: -0.1207 T22: -0.2064 REMARK 3 T33: -0.0471 T12: -0.0825 REMARK 3 T13: -0.0773 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 37.1661 L22: 18.0462 REMARK 3 L33: 22.8367 L12: 10.0401 REMARK 3 L13: -14.9804 L23: -4.2367 REMARK 3 S TENSOR REMARK 3 S11: 0.4189 S12: 0.5501 S13: 0.0730 REMARK 3 S21: 0.4949 S22: -0.3907 S23: 1.4410 REMARK 3 S31: 0.4026 S32: -0.5891 S33: -0.0282 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9260 8.3990 25.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.0078 T22: -0.1139 REMARK 3 T33: 0.0334 T12: 0.0675 REMARK 3 T13: -0.0639 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 0.7631 L22: 8.5569 REMARK 3 L33: 12.5237 L12: 0.9799 REMARK 3 L13: -2.0603 L23: 4.4824 REMARK 3 S TENSOR REMARK 3 S11: 0.1350 S12: -0.0857 S13: -0.2215 REMARK 3 S21: 0.0487 S22: 0.1422 S23: -0.6205 REMARK 3 S31: 0.4262 S32: 0.2716 S33: -0.2772 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9750 3.2250 18.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: -0.1157 REMARK 3 T33: 0.0278 T12: 0.0020 REMARK 3 T13: -0.0456 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 22.3513 L22: 6.0338 REMARK 3 L33: 9.0432 L12: 7.2604 REMARK 3 L13: -1.7449 L23: -6.2884 REMARK 3 S TENSOR REMARK 3 S11: -0.3839 S12: -0.3631 S13: 0.0087 REMARK 3 S21: 0.1476 S22: 0.2219 S23: -0.0138 REMARK 3 S31: 0.1696 S32: -1.0665 S33: 0.1620 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5150 14.8510 3.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: -0.1170 REMARK 3 T33: -0.0325 T12: -0.0120 REMARK 3 T13: 0.0370 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 38.1072 L22: 18.2896 REMARK 3 L33: 12.9066 L12: 23.2219 REMARK 3 L13: -11.9928 L23: -7.7455 REMARK 3 S TENSOR REMARK 3 S11: 0.2922 S12: 0.9483 S13: 1.0471 REMARK 3 S21: 0.0636 S22: 0.5744 S23: 0.5985 REMARK 3 S31: -0.5238 S32: -0.2770 S33: -0.8666 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4070 23.6550 13.5500 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.3839 REMARK 3 T33: 0.3102 T12: -0.3885 REMARK 3 T13: 0.1424 T23: -0.3157 REMARK 3 L TENSOR REMARK 3 L11: 23.8970 L22: 22.8707 REMARK 3 L33: 12.9772 L12: -0.3557 REMARK 3 L13: 4.1943 L23: -5.9481 REMARK 3 S TENSOR REMARK 3 S11: -0.4335 S12: -0.0035 S13: 1.3226 REMARK 3 S21: 0.4700 S22: 0.6611 S23: -1.7836 REMARK 3 S31: -1.3918 S32: 2.2541 S33: -0.2276 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0270 14.9530 7.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: -0.0826 REMARK 3 T33: -0.1625 T12: -0.0980 REMARK 3 T13: -0.0347 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 14.3868 L22: 5.2488 REMARK 3 L33: 6.3622 L12: 2.1413 REMARK 3 L13: -4.0341 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.3067 S12: -0.1042 S13: 0.1237 REMARK 3 S21: -0.3197 S22: 0.1942 S23: -0.0008 REMARK 3 S31: -0.4972 S32: 0.2381 S33: -0.5009 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3670 13.3620 8.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.0023 T22: 0.0633 REMARK 3 T33: -0.0022 T12: -0.1530 REMARK 3 T13: 0.0333 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 6.9781 L22: 4.1974 REMARK 3 L33: 3.9209 L12: -2.9373 REMARK 3 L13: -3.7373 L23: 2.2419 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.3963 S13: 0.0376 REMARK 3 S21: -0.5102 S22: 0.4480 S23: -0.3565 REMARK 3 S31: -0.2835 S32: 0.8131 S33: -0.4710 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5940 -2.4560 -5.0710 REMARK 3 T TENSOR REMARK 3 T11: 1.0151 T22: 1.6275 REMARK 3 T33: 0.7703 T12: 0.7626 REMARK 3 T13: -0.0971 T23: -0.2862 REMARK 3 L TENSOR REMARK 3 L11: 28.8301 L22: 4.3609 REMARK 3 L33: 79.5811 L12: 11.2127 REMARK 3 L13: 47.8992 L23: 18.6291 REMARK 3 S TENSOR REMARK 3 S11: -1.9058 S12: -5.3152 S13: 1.6729 REMARK 3 S21: -0.2725 S22: -0.5198 S23: 2.2662 REMARK 3 S31: -1.2010 S32: -7.6354 S33: 2.4256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.1M MES PH 6.0, 1.26M REMARK 280 AMMONIUM SULFATE, 0.56MM CYMAL-5. PROTEIN: 21.2MG/ML. DROPS: 1+1 REMARK 280 MICROLITER, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 34.85950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.26750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.13375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.85950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 177.40125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 177.40125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.85950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.13375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 34.85950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.26750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 34.85950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 118.26750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 34.85950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 177.40125 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 59.13375 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 34.85950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 59.13375 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 177.40125 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 34.85950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.26750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE TWO REMARK 300 FOLD AXIS: X, Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 87 REMARK 465 ASN A 88 REMARK 465 ALA A 89 REMARK 465 THR A 90 REMARK 465 LEU A 91 REMARK 465 GLY A 92 REMARK 465 LYS A 93 REMARK 465 GLU A 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 238 C LYS A 238 O 0.196 REMARK 500 LYS A 238 C LYS A 238 OXT 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 159 -112.04 -110.15 REMARK 500 LEU A 169 38.74 -147.66 REMARK 500 SER A 174 -63.51 -102.19 REMARK 500 ARG A 196 -131.41 42.06 REMARK 500 THR A 213 -6.70 109.50 REMARK 500 ALA A 234 104.77 82.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 142 -10.65 REMARK 500 PHE A 145 -10.36 REMARK 500 LEU A 169 -10.36 REMARK 500 ASP A 232 10.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 34 O REMARK 620 2 HOH A 34 O 164.0 REMARK 620 3 HOH A 35 O 132.9 53.5 REMARK 620 4 HOH A 35 O 50.4 132.0 155.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85412 RELATED DB: TARGETDB DBREF 2OGG A 90 238 UNP P39796 TRER_BACSU 90 238 SEQADV 2OGG SER A 87 UNP P39796 EXPRESSION TAG SEQADV 2OGG ASN A 88 UNP P39796 EXPRESSION TAG SEQADV 2OGG ALA A 89 UNP P39796 EXPRESSION TAG SEQADV 2OGG MSE A 201 UNP P39796 MET 201 MODIFIED RESIDUE SEQRES 1 A 152 SER ASN ALA THR LEU GLY LYS GLU THR LYS THR THR VAL SEQRES 2 A 152 HIS LYS PHE GLY LEU GLU PRO PRO SER GLU LEU ILE GLN SEQRES 3 A 152 LYS GLN LEU ARG ALA ASN LEU ASP ASP ASP ILE TRP GLU SEQRES 4 A 152 VAL ILE ARG SER ARG LYS ILE ASP GLY GLU HIS VAL ILE SEQRES 5 A 152 LEU ASP LYS ASP TYR PHE PHE ARG LYS HIS VAL PRO HIS SEQRES 6 A 152 LEU THR LYS GLU ILE CYS GLU ASN SER ILE TYR GLU TYR SEQRES 7 A 152 ILE GLU GLY GLU LEU GLY LEU SER ILE SER TYR ALA GLN SEQRES 8 A 152 LYS GLU ILE VAL ALA GLU PRO CYS THR ASP GLU ASP ARG SEQRES 9 A 152 GLU LEU LEU ASP LEU ARG GLY TYR ASP HIS MSE VAL VAL SEQRES 10 A 152 VAL ARG ASN TYR VAL PHE LEU GLU ASP THR SER LEU PHE SEQRES 11 A 152 GLN TYR THR GLU SER ARG HIS ARG LEU ASP LYS PHE ARG SEQRES 12 A 152 PHE VAL ASP PHE ALA ARG ARG GLY LYS MODRES 2OGG MSE A 201 MET SELENOMETHIONINE HET MSE A 201 8 HET NA A 301 1 HET SO4 A 302 5 HET SO4 A 303 5 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 NA NA 1+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *36(H2 O) HELIX 1 1 SER A 108 ARG A 116 1 9 HELIX 2 2 THR A 153 GLU A 158 1 6 HELIX 3 3 SER A 160 GLY A 170 1 11 HELIX 4 4 THR A 186 LEU A 193 1 8 HELIX 5 5 ASP A 226 PHE A 228 5 3 SHEET 1 A 6 THR A 97 GLU A 105 0 SHEET 2 A 6 ILE A 123 ILE A 132 -1 O ILE A 127 N LYS A 101 SHEET 3 A 6 GLU A 135 PHE A 145 -1 O ASP A 140 N ARG A 128 SHEET 4 A 6 LEU A 215 ARG A 224 -1 O ARG A 222 N LEU A 139 SHEET 5 A 6 HIS A 200 LEU A 210 -1 N VAL A 202 O HIS A 223 SHEET 6 A 6 ILE A 173 PRO A 184 -1 N GLU A 179 O ARG A 205 LINK C HIS A 200 N MSE A 201 1555 1555 1.34 LINK C MSE A 201 N VAL A 202 1555 1555 1.33 LINK O HOH A 34 NA NA A 301 1555 1555 2.41 LINK O HOH A 34 NA NA A 301 15555 1555 2.29 LINK O HOH A 35 NA NA A 301 1555 1555 2.20 LINK O HOH A 35 NA NA A 301 15555 1555 2.34 CISPEP 1 ASP A 133 GLY A 134 0 1.58 CISPEP 2 PHE A 233 ALA A 234 0 -4.61 SITE 1 AC1 3 HOH A 34 HOH A 35 HIS A 200 SITE 1 AC2 7 HOH A 19 ARG A 128 ARG A 130 SER A 160 SITE 2 AC2 7 ILE A 161 TYR A 162 LYS A 238 SITE 1 AC3 6 HOH A 14 ASP A 120 ASP A 121 ASP A 122 SITE 2 AC3 6 ARG A 146 LYS A 147 SITE 1 AC4 8 HOH A 6 GLU A 105 PRO A 106 PRO A 107 SITE 2 AC4 8 SER A 108 ILE A 111 ILE A 123 GLU A 125 SITE 1 AC5 5 LEU A 115 ARG A 116 PHE A 145 SER A 214 SITE 2 AC5 5 LEU A 215 SITE 1 AC6 1 ARG A 116 CRYST1 69.719 69.719 236.535 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004228 0.00000