HEADER HYDROLASE 11-JAN-07 2OIG TITLE CRYSTAL STRUCTURE OF RS21-C6 CORE SEGMENT AND DM5CTP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RS21-C6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CORE SEGMENT, RESIDUES 21-126; COMPND 5 SYNONYM: RIKEN CDNA 2410015N17 GENE, ES CELLS CDNA, RIKEN FULL-LENGTH COMPND 6 ENRICHED LIBRARY, CLONE:2410029L09 PRODUCT:RS21-C6 HOMOLOG, ES CELLS COMPND 7 CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:2410015N17 COMPND 8 PRODUCT:HYPOTHETICAL PROTEIN, FULL INSERT SEQUENCE, 18-DAY EMBRYO COMPND 9 WHOLE BODY CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:1110012M04 COMPND 10 PRODUCT:RS21-C6 2410015N17RIK PROTEIN, RIKEN CDNA 2410015N17 GENE, COMPND 11 FULL INSERT SEQUENCE, RSCUT; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS HELIX, PROTEIN-NUCLEOSIDE TRIPHOSPHATE COMPLEX, SUBSTRATE COMPLEX, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.WU,Y.LIU,Q.ZHAO,S.LIAO,J.ZHANG,M.BARTLAM,W.CHEN,Z.RAO REVDAT 5 25-OCT-23 2OIG 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2OIG 1 REMARK REVDAT 3 24-FEB-09 2OIG 1 VERSN REVDAT 2 03-APR-07 2OIG 1 JRNL REVDAT 1 06-MAR-07 2OIG 0 JRNL AUTH B.WU,Y.LIU,Q.ZHAO,S.LIAO,J.ZHANG,M.BARTLAM,W.CHEN,Z.RAO JRNL TITL CRYSTAL STRUCTURE OF RS21-C6, INVOLVED IN NUCLEOSIDE JRNL TITL 2 TRIPHOSPHATE PYROPHOSPHOHYDROLYSIS JRNL REF J.MOL.BIOL. V. 367 1405 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17320107 JRNL DOI 10.1016/J.JMB.2007.01.057 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.20000 REMARK 3 B22 (A**2) : 12.60000 REMARK 3 B33 (A**2) : -6.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6599 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2OIE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 17% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.09400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.56150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.56150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.09400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 TWO DIMERS IN ONE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 ARG A 126 REMARK 465 GLY B 16 REMARK 465 PRO B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 ASP B 123 REMARK 465 THR B 124 REMARK 465 ASN B 125 REMARK 465 ARG B 126 REMARK 465 GLY C 16 REMARK 465 PRO C 17 REMARK 465 LEU C 18 REMARK 465 GLY C 19 REMARK 465 SER C 20 REMARK 465 ARG C 21 REMARK 465 GLU C 40 REMARK 465 PHE C 41 REMARK 465 ALA C 42 REMARK 465 ALA C 43 REMARK 465 GLU C 44 REMARK 465 ARG C 45 REMARK 465 ASP C 46 REMARK 465 TRP C 47 REMARK 465 GLU C 48 REMARK 465 GLU C 78 REMARK 465 PRO C 79 REMARK 465 ASP C 123 REMARK 465 THR C 124 REMARK 465 ASN C 125 REMARK 465 ARG C 126 REMARK 465 GLY D 16 REMARK 465 PRO D 17 REMARK 465 LEU D 18 REMARK 465 GLY D 19 REMARK 465 SER D 20 REMARK 465 ASN D 125 REMARK 465 ARG D 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 79 O HOH A 132 2.02 REMARK 500 NE1 TRP A 84 O HOH A 132 2.05 REMARK 500 O GLN A 82 O HOH A 179 2.08 REMARK 500 OG SER D 75 O HOH D 947 2.10 REMARK 500 OE2 GLU D 69 O HOH D 899 2.11 REMARK 500 O PRO D 115 O HOH D 934 2.14 REMARK 500 O HOH A 168 O HOH B 1925 2.15 REMARK 500 O HOH B 1919 O HOH B 1922 2.16 REMARK 500 O HOH C 129 O HOH C 146 2.16 REMARK 500 OD2 ASP D 46 O HOH D 920 2.16 REMARK 500 NH1 ARG C 109 O HOH C 154 2.16 REMARK 500 O HOH A 184 O HOH A 187 2.17 REMARK 500 OE2 GLU A 63 O HOH D 899 2.19 REMARK 500 OE1 GLU A 94 O HOH A 196 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS C 87 O2G 523 D 888 2784 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA D 42 CA ALA D 42 CB 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 23 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 GLN A 52 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO A 53 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 MET B 122 CA - C - O ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 23 169.99 6.24 REMARK 500 ALA A 39 -65.27 -90.79 REMARK 500 ALA A 42 -86.71 -43.84 REMARK 500 ALA A 43 41.02 -55.72 REMARK 500 ARG A 45 17.12 -142.05 REMARK 500 TRP A 47 26.47 -78.45 REMARK 500 HIS A 51 68.28 -112.87 REMARK 500 PRO A 53 -66.33 -26.50 REMARK 500 LYS A 74 -164.63 -101.84 REMARK 500 PRO A 81 0.89 -49.30 REMARK 500 PRO A 86 -35.40 -31.40 REMARK 500 ASP A 113 73.46 -69.91 REMARK 500 THR A 124 -113.51 170.08 REMARK 500 GLU B 28 168.51 171.40 REMARK 500 ARG B 45 40.72 -83.41 REMARK 500 ASP B 46 76.28 30.27 REMARK 500 PRO B 53 -69.28 -13.84 REMARK 500 LYS B 74 -145.75 -76.64 REMARK 500 ASP B 76 -89.08 -37.90 REMARK 500 THR B 77 61.71 -113.90 REMARK 500 GLU B 78 -167.71 -105.07 REMARK 500 PRO B 81 -75.51 -38.75 REMARK 500 GLN B 82 -10.75 -40.39 REMARK 500 ILE B 101 -30.51 -38.84 REMARK 500 SER B 120 -19.13 -45.43 REMARK 500 PRO C 27 3.16 -56.35 REMARK 500 GLU C 28 160.47 173.25 REMARK 500 HIS C 51 48.12 -56.18 REMARK 500 PHE C 71 -27.38 -141.70 REMARK 500 TRP C 73 34.24 -96.17 REMARK 500 LYS C 74 -146.11 -97.06 REMARK 500 PRO C 85 166.35 -49.39 REMARK 500 ALA C 117 -16.36 -42.72 REMARK 500 PRO D 27 -70.61 -68.37 REMARK 500 ARG D 36 -8.59 -48.58 REMARK 500 LEU D 37 -63.82 -93.66 REMARK 500 ALA D 43 -0.12 -49.99 REMARK 500 ASP D 46 81.32 32.61 REMARK 500 GLU D 48 -32.58 -20.75 REMARK 500 HIS D 51 81.08 -66.91 REMARK 500 PRO D 53 -84.49 -32.83 REMARK 500 GLU D 69 25.43 -69.60 REMARK 500 ASP D 76 0.47 -67.69 REMARK 500 PRO D 79 9.02 -44.21 REMARK 500 HIS D 111 69.36 67.51 REMARK 500 ASP D 123 29.43 -66.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 523 D 888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 523 B 1888 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OIE RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGANDS DBREF 2OIG A 21 126 UNP Q9QY93 Q9QY93_MOUSE 21 126 DBREF 2OIG B 21 126 UNP Q9QY93 Q9QY93_MOUSE 21 126 DBREF 2OIG C 21 126 UNP Q9QY93 Q9QY93_MOUSE 21 126 DBREF 2OIG D 21 126 UNP Q9QY93 Q9QY93_MOUSE 21 126 SEQADV 2OIG GLY A 16 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG PRO A 17 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG LEU A 18 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY A 19 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG SER A 20 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY B 16 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG PRO B 17 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG LEU B 18 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY B 19 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG SER B 20 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY C 16 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG PRO C 17 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG LEU C 18 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY C 19 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG SER C 20 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY D 16 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG PRO D 17 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG LEU D 18 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG GLY D 19 UNP Q9QY93 CLONING ARTIFACT SEQADV 2OIG SER D 20 UNP Q9QY93 CLONING ARTIFACT SEQRES 1 A 111 GLY PRO LEU GLY SER ARG PRO PHE ARG PHE SER PRO GLU SEQRES 2 A 111 PRO THR LEU GLU ASP ILE ARG ARG LEU HIS ALA GLU PHE SEQRES 3 A 111 ALA ALA GLU ARG ASP TRP GLU GLN PHE HIS GLN PRO ARG SEQRES 4 A 111 ASN LEU LEU LEU ALA LEU VAL GLY GLU VAL GLY GLU LEU SEQRES 5 A 111 ALA GLU LEU PHE GLN TRP LYS SER ASP THR GLU PRO GLY SEQRES 6 A 111 PRO GLN ALA TRP PRO PRO LYS GLU ARG ALA ALA LEU GLN SEQRES 7 A 111 GLU GLU LEU SER ASP VAL LEU ILE TYR LEU VAL ALA LEU SEQRES 8 A 111 ALA ALA ARG CYS HIS VAL ASP LEU PRO GLN ALA VAL ILE SEQRES 9 A 111 SER LYS MET ASP THR ASN ARG SEQRES 1 B 111 GLY PRO LEU GLY SER ARG PRO PHE ARG PHE SER PRO GLU SEQRES 2 B 111 PRO THR LEU GLU ASP ILE ARG ARG LEU HIS ALA GLU PHE SEQRES 3 B 111 ALA ALA GLU ARG ASP TRP GLU GLN PHE HIS GLN PRO ARG SEQRES 4 B 111 ASN LEU LEU LEU ALA LEU VAL GLY GLU VAL GLY GLU LEU SEQRES 5 B 111 ALA GLU LEU PHE GLN TRP LYS SER ASP THR GLU PRO GLY SEQRES 6 B 111 PRO GLN ALA TRP PRO PRO LYS GLU ARG ALA ALA LEU GLN SEQRES 7 B 111 GLU GLU LEU SER ASP VAL LEU ILE TYR LEU VAL ALA LEU SEQRES 8 B 111 ALA ALA ARG CYS HIS VAL ASP LEU PRO GLN ALA VAL ILE SEQRES 9 B 111 SER LYS MET ASP THR ASN ARG SEQRES 1 C 111 GLY PRO LEU GLY SER ARG PRO PHE ARG PHE SER PRO GLU SEQRES 2 C 111 PRO THR LEU GLU ASP ILE ARG ARG LEU HIS ALA GLU PHE SEQRES 3 C 111 ALA ALA GLU ARG ASP TRP GLU GLN PHE HIS GLN PRO ARG SEQRES 4 C 111 ASN LEU LEU LEU ALA LEU VAL GLY GLU VAL GLY GLU LEU SEQRES 5 C 111 ALA GLU LEU PHE GLN TRP LYS SER ASP THR GLU PRO GLY SEQRES 6 C 111 PRO GLN ALA TRP PRO PRO LYS GLU ARG ALA ALA LEU GLN SEQRES 7 C 111 GLU GLU LEU SER ASP VAL LEU ILE TYR LEU VAL ALA LEU SEQRES 8 C 111 ALA ALA ARG CYS HIS VAL ASP LEU PRO GLN ALA VAL ILE SEQRES 9 C 111 SER LYS MET ASP THR ASN ARG SEQRES 1 D 111 GLY PRO LEU GLY SER ARG PRO PHE ARG PHE SER PRO GLU SEQRES 2 D 111 PRO THR LEU GLU ASP ILE ARG ARG LEU HIS ALA GLU PHE SEQRES 3 D 111 ALA ALA GLU ARG ASP TRP GLU GLN PHE HIS GLN PRO ARG SEQRES 4 D 111 ASN LEU LEU LEU ALA LEU VAL GLY GLU VAL GLY GLU LEU SEQRES 5 D 111 ALA GLU LEU PHE GLN TRP LYS SER ASP THR GLU PRO GLY SEQRES 6 D 111 PRO GLN ALA TRP PRO PRO LYS GLU ARG ALA ALA LEU GLN SEQRES 7 D 111 GLU GLU LEU SER ASP VAL LEU ILE TYR LEU VAL ALA LEU SEQRES 8 D 111 ALA ALA ARG CYS HIS VAL ASP LEU PRO GLN ALA VAL ILE SEQRES 9 D 111 SER LYS MET ASP THR ASN ARG HET 523 B1888 29 HET 523 D 888 29 HETNAM 523 2'-DEOXY-5-METHYLCYTIDINE 5'-(TETRAHYDROGEN HETNAM 2 523 TRIPHOSPHATE) HETSYN 523 5-METHYL-2'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE FORMUL 5 523 2(C10 H19 N3 O13 P3 1+) FORMUL 7 HOH *271(H2 O) HELIX 1 1 THR A 30 ALA A 43 1 14 HELIX 2 2 GLN A 52 GLN A 72 1 21 HELIX 3 3 LYS A 87 CYS A 110 1 24 HELIX 4 4 ASP A 113 SER A 120 1 8 HELIX 5 5 THR B 30 ARG B 45 1 16 HELIX 6 6 GLN B 52 TRP B 73 1 22 HELIX 7 7 GLY B 80 TRP B 84 5 5 HELIX 8 8 PRO B 85 CYS B 110 1 26 HELIX 9 9 PRO B 115 SER B 120 1 6 HELIX 10 10 THR C 30 ALA C 39 1 10 HELIX 11 11 GLN C 52 LEU C 70 1 19 HELIX 12 12 GLY C 80 TRP C 84 5 5 HELIX 13 13 PRO C 85 ARG C 109 1 25 HELIX 14 14 PRO C 115 SER C 120 1 6 HELIX 15 15 THR D 30 ALA D 43 1 14 HELIX 16 16 GLN D 52 GLU D 69 1 18 HELIX 17 17 PRO D 85 HIS D 111 1 27 HELIX 18 18 ASP D 113 ASP D 123 1 11 LINK CB PHE B 50 N4 523 B1888 1555 1555 1.99 LINK NE2 HIS B 51 N3 523 B1888 1555 1555 1.67 LINK OE2 GLU B 63 O1B 523 B1888 1555 1555 2.04 LINK CZ2 TRP D 73 N4 523 D 888 1555 1555 1.79 CISPEP 1 GLU A 28 PRO A 29 0 -0.28 CISPEP 2 GLU B 28 PRO B 29 0 -0.22 CISPEP 3 GLU C 28 PRO C 29 0 -0.65 CISPEP 4 GLU D 28 PRO D 29 0 0.33 SITE 1 AC1 13 TRP A 47 GLU A 63 GLU A 66 ASP A 98 SITE 2 AC1 13 ILE A 101 TYR A 102 HOH A 127 HOH A 176 SITE 3 AC1 13 GLU D 69 TRP D 73 HOH D 899 HOH D 908 SITE 4 AC1 13 HOH D 929 SITE 1 AC2 15 HIS B 38 TRP B 47 PHE B 50 HIS B 51 SITE 2 AC2 15 GLU B 63 GLU B 66 ILE B 101 TYR B 102 SITE 3 AC2 15 HOH B1893 HOH B1930 HOH B1936 HOH B1943 SITE 4 AC2 15 HOH B1949 HOH B1955 TRP C 73 CRYST1 58.188 81.883 87.123 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011478 0.00000