HEADER HYDROLASE 11-JAN-07 2OIV TITLE STRUCTURAL ANALYSIS OF XANTHOMONAS XOPD PROVIDES INSIGHTS INTO TITLE 2 SUBSTRATE SPECIFICITY OF UBIQUITIN-LIKE PROTEIN PROTEASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: XANTHOMONAS OUTER PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC FRAGMENT (RESIDUES 335-520); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS EUVESICATORIA; SOURCE 3 ORGANISM_TAXID: 456327; SOURCE 4 GENE: XOPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-RTEV KEYWDS CLAN CE FAMILY 48 CYSTEINE PROTEASE, TYPE III SECRETED EFFECTOR, KEYWDS 2 DESUMOYLATING ENZYME, SECRETED VIRULENCE FACTOR, PEPTIDASE, KEYWDS 3 ISOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOSED,D.R.TOMCHICK,C.A.BRAUTIGAM,M.MACHIUS,K.ORTH REVDAT 4 27-DEC-23 2OIV 1 REMARK REVDAT 3 13-JUL-11 2OIV 1 VERSN REVDAT 2 24-FEB-09 2OIV 1 VERSN REVDAT 1 29-MAY-07 2OIV 0 JRNL AUTH R.CHOSED,D.R.TOMCHICK,C.A.BRAUTIGAM,S.MUKHERJEE,V.S.NEGI, JRNL AUTH 2 M.MACHIUS,K.ORTH JRNL TITL STRUCTURAL ANALYSIS OF XANTHOMONAS XOPD PROVIDES INSIGHTS JRNL TITL 2 INTO SUBSTRATE SPECIFICITY OF UBIQUITIN-LIKE PROTEIN JRNL TITL 3 PROTEASES. JRNL REF J.BIOL.CHEM. V. 282 6773 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17204475 JRNL DOI 10.1074/JBC.M608730200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOSED,S.MUKHERJEE,L.M.LOIS,K.ORTH REMARK 1 TITL EVOLUTION OF A SIGNALLING SYSTEM THAT INCORPORATES BOTH REMARK 1 TITL 2 REDUNDANCY AND DIVERSITY: ARABIDOPSIS SUMOYLATION. REMARK 1 REF BIOCHEM.J. V. 398 521 2006 REMARK 1 REFN ISSN 0264-6021 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.HOTSON,R.CHOSED,H.SHU,K.ORTH,M.B.MUDGETT REMARK 1 TITL XANTHOMONAS TYPE III EFFECTOR XOPD TARGETS SUMO-CONJUGATED REMARK 1 TITL 2 PROTEINS IN PLANTA. REMARK 1 REF MOL.MICROBIOL. V. 50 377 2003 REMARK 1 REFN ISSN 0950-382X REMARK 1 REFERENCE 3 REMARK 1 AUTH E.MOSSESSOVA,C.D.LIMA REMARK 1 TITL ULP1-SUMO CRYSTAL STRUCTURE AND GENETIC ANALYSIS REVEAL REMARK 1 TITL 2 CONSERVED INTERACTIONS AND A REGULATORY ELEMENT ESSENTIAL REMARK 1 TITL 3 FOR CELL GROWTH IN YEAST REMARK 1 REF MOL.CELL V. 5 865 2000 REMARK 1 REFN ISSN 1097-2765 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : 2.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.920 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1384 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1882 ; 1.480 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 167 ; 6.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;34.803 ;23.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 218 ;15.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.515 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 205 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1085 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 619 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 912 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 872 ; 1.033 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1354 ; 1.642 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 576 ; 2.367 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 528 ; 3.450 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6316 24.6075 -0.5502 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.1817 REMARK 3 T33: 0.1359 T12: 0.0135 REMARK 3 T13: 0.0131 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.4638 L22: 2.5562 REMARK 3 L33: 3.0259 L12: -0.8424 REMARK 3 L13: 0.3803 L23: 0.1845 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.2492 S13: 0.1564 REMARK 3 S21: -0.2811 S22: -0.1575 S23: -0.2446 REMARK 3 S31: -0.0148 S32: 0.3949 S33: 0.1240 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4139 20.4048 9.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1416 REMARK 3 T33: 0.0951 T12: 0.0162 REMARK 3 T13: 0.0330 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.6276 L22: 3.6203 REMARK 3 L33: 2.0725 L12: -1.2828 REMARK 3 L13: 0.4448 L23: -0.0216 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: -0.1937 S13: -0.1515 REMARK 3 S21: 0.2760 S22: 0.1255 S23: 0.0396 REMARK 3 S31: 0.1972 S32: 0.2751 S33: 0.0338 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 443 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4776 12.0349 5.3944 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0774 REMARK 3 T33: 0.1535 T12: 0.0289 REMARK 3 T13: 0.0527 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 6.6632 L22: 6.0735 REMARK 3 L33: 12.3611 L12: 4.3445 REMARK 3 L13: -1.7521 L23: 3.3984 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 0.4337 S13: -0.3250 REMARK 3 S21: -0.4993 S22: -0.3392 S23: 0.1666 REMARK 3 S31: -0.0648 S32: -0.9392 S33: 0.3944 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 444 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4443 20.0794 10.4912 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0891 REMARK 3 T33: 0.1326 T12: -0.0096 REMARK 3 T13: 0.0703 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 4.4466 L22: 5.1153 REMARK 3 L33: 4.5749 L12: -0.7419 REMARK 3 L13: 1.5642 L23: -0.6172 REMARK 3 S TENSOR REMARK 3 S11: -0.0988 S12: -0.0473 S13: -0.2504 REMARK 3 S21: 0.3020 S22: 0.1235 S23: 0.6011 REMARK 3 S31: -0.0989 S32: -0.1508 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 469 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4129 30.4521 -1.8809 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1349 REMARK 3 T33: 0.1158 T12: 0.0026 REMARK 3 T13: -0.0323 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 5.0515 L22: 3.8361 REMARK 3 L33: 2.5079 L12: -3.0811 REMARK 3 L13: -0.2138 L23: -0.2126 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.2304 S13: -0.0344 REMARK 3 S21: -0.2388 S22: -0.1817 S23: 0.1710 REMARK 3 S31: 0.0193 S32: 0.0444 S33: 0.1347 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 514 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7001 23.8062 -13.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.3792 T22: 0.1498 REMARK 3 T33: -0.2349 T12: 0.1093 REMARK 3 T13: 0.0096 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 50.3645 L22: 5.1723 REMARK 3 L33: 10.8372 L12: -8.8132 REMARK 3 L13: -8.3459 L23: 0.9688 REMARK 3 S TENSOR REMARK 3 S11: 0.6269 S12: 3.5980 S13: -0.1901 REMARK 3 S21: -1.4521 S22: -0.7136 S23: -0.3614 REMARK 3 S31: 0.1452 S32: -0.3825 S33: 0.0867 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NONE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 32.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML PROTEIN IN 20 MM TRIS-HCL PH REMARK 280 7.5, 75 MM KCL, AND 0.5 MM DTT, 1.4 - 1.6 M SODIUM POTASSIUM REMARK 280 PHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.41000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.80900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.80900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.20500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.80900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.80900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.61500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.80900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.80900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 11.20500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.80900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.80900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.61500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 335 REMARK 465 THR A 336 REMARK 465 SER A 337 REMARK 465 ALA A 432 REMARK 465 GLN A 433 REMARK 465 GLN A 464 REMARK 465 SER A 465 REMARK 465 ASP A 466 REMARK 465 GLY A 467 REMARK 465 TYR A 468 REMARK 465 ALA A 515 REMARK 465 GLU A 516 REMARK 465 GLN A 517 REMARK 465 ALA A 518 REMARK 465 PRO A 519 REMARK 465 ALA A 520 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 40 O HOH A 55 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 502 CB GLU A 502 CG 0.118 REMARK 500 GLU A 502 CG GLU A 502 CD 0.126 REMARK 500 GLY A 506 C LEU A 507 N 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 417 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 510 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 510 CB - CG - OD2 ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 396 150.87 -47.28 REMARK 500 ALA A 408 -57.08 -121.48 REMARK 500 HIS A 409 130.87 -173.57 REMARK 500 ALA A 462 61.74 38.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OIX RELATED DB: PDB DBREF 2OIV A 335 520 UNP Q3BYJ5 Q3BYJ5_XANC5 335 520 SEQRES 1 A 186 ALA THR SER TRP LEU LEU ASP GLY HIS LEU ARG ALA TYR SEQRES 2 A 186 THR ASP ASP LEU ALA ARG ARG LEU ARG GLY GLU PRO ASN SEQRES 3 A 186 ALA HIS LEU LEU HIS PHE ALA ASP SER GLN VAL VAL THR SEQRES 4 A 186 MET LEU SER SER ALA ASP PRO ASP GLN GLN ALA ARG ALA SEQRES 5 A 186 GLN ARG LEU LEU ALA GLY ASP ASP ILE PRO PRO ILE VAL SEQRES 6 A 186 PHE LEU PRO ILE ASN GLN PRO ASN ALA HIS TRP SER LEU SEQRES 7 A 186 LEU VAL VAL ASP ARG ARG ASN LYS ASP ALA VAL ALA ALA SEQRES 8 A 186 TYR HIS TYR ASP SER MET ALA GLN LYS ASP PRO GLN GLN SEQRES 9 A 186 ARG TYR LEU ALA ASP MET ALA ALA TYR HIS LEU GLY LEU SEQRES 10 A 186 ASP TYR GLN GLN THR HIS GLU MET PRO ILE ALA ILE GLN SEQRES 11 A 186 SER ASP GLY TYR SER CYS GLY ASP HIS VAL LEU THR GLY SEQRES 12 A 186 ILE GLU VAL LEU ALA HIS ARG VAL LEU ASP GLY THR PHE SEQRES 13 A 186 ASP TYR ALA GLY GLY ARG ASP LEU THR ASP ILE GLU PRO SEQRES 14 A 186 ASP ARG GLY LEU ILE ARG ASP ARG LEU ALA GLN ALA GLU SEQRES 15 A 186 GLN ALA PRO ALA HET PO4 A 100 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *83(H2 O) HELIX 1 1 LEU A 340 ARG A 356 1 17 HELIX 2 2 ASN A 360 HIS A 362 5 3 HELIX 3 3 ASP A 368 LEU A 375 1 8 HELIX 4 4 ASP A 379 GLY A 392 1 14 HELIX 5 5 PRO A 436 LEU A 449 1 14 HELIX 6 6 ASP A 452 THR A 456 5 5 HELIX 7 7 SER A 469 GLY A 488 1 20 HELIX 8 8 THR A 489 TYR A 492 5 4 HELIX 9 9 ASP A 504 GLN A 514 1 11 SHEET 1 A 5 LEU A 364 PHE A 366 0 SHEET 2 A 5 ILE A 398 GLN A 405 1 O PHE A 400 N HIS A 365 SHEET 3 A 5 HIS A 409 ASP A 416 -1 O LEU A 413 N LEU A 401 SHEET 4 A 5 ALA A 424 TYR A 428 -1 O TYR A 426 N VAL A 414 SHEET 5 A 5 HIS A 457 MET A 459 1 O MET A 459 N HIS A 427 SITE 1 AC1 6 HOH A 35 ASN A 360 ARG A 418 VAL A 485 SITE 2 AC1 6 GLY A 488 ASP A 491 CRYST1 91.618 91.618 44.820 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022311 0.00000