HEADER PROTEIN BINDING 13-JAN-07 2OJR TITLE STRUCTURE OF UBIQUITIN SOLVED BY SAD USING THE LANTHANIDE-BINDING TAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-11A KEYWDS LANTHIDE-BINDING TAG, TERBIUM, TB, SAD PHASING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,K.N.ALLEN REVDAT 4 27-DEC-23 2OJR 1 REMARK SEQADV REVDAT 3 18-OCT-17 2OJR 1 REMARK REVDAT 2 24-FEB-09 2OJR 1 VERSN REVDAT 1 12-JUN-07 2OJR 0 JRNL AUTH N.R.SILVAGGI,L.J.MARTIN,H.SCHWALBE,B.IMPERIALI,K.N.ALLEN JRNL TITL DOUBLE-LANTHANIDE-BINDING TAGS FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHIC STRUCTURE DETERMINATION. JRNL REF J.AM.CHEM.SOC. V. 129 7114 2007 JRNL REFN ISSN 0002-7863 JRNL PMID 17497863 JRNL DOI 10.1021/JA070481N REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.00000 REMARK 3 B22 (A**2) : 6.00000 REMARK 3 B33 (A**2) : -8.99000 REMARK 3 B12 (A**2) : 3.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.355 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 884 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 592 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1197 ; 1.608 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1459 ; 1.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 109 ; 7.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;45.403 ;26.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 162 ;19.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 135 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 983 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 155 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 254 ; 0.286 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 596 ; 0.238 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 417 ; 0.196 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 486 ; 0.110 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.258 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.121 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.270 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 13 ; 0.267 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.320 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 694 ; 0.766 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 226 ; 0.085 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 0.908 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 391 ; 1.389 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 320 ; 2.171 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : SI-111 MONO, MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7214 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 3.7 M NACL, 33% REMARK 280 MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.84000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.42000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.42000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROTEIN IS BIOLOGICALLY ACTIVE AS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 73 OE2 GLU A 79 1.95 REMARK 500 OD1 ASP A 86 O ASP A 90 2.05 REMARK 500 OE1 GLU A 94 O HOH A 17 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 89 18.94 50.44 REMARK 500 LYS A 163 130.18 -37.91 REMARK 500 ARG A 174 -56.46 59.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 158 TYR A 159 145.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 500 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASN A 73 OD1 78.9 REMARK 620 3 ASP A 75 OD1 89.1 84.6 REMARK 620 4 TRP A 77 O 77.4 151.5 79.4 REMARK 620 5 GLU A 79 OE1 152.3 122.7 77.2 76.5 REMARK 620 6 GLU A 79 OE2 151.2 75.8 102.0 130.5 56.4 REMARK 620 7 GLU A 82 OE1 93.9 68.4 151.7 128.8 109.7 64.0 REMARK 620 8 GLU A 82 OE2 95.0 117.4 158.0 80.5 89.6 84.5 49.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 501 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD2 REMARK 620 2 ASN A 88 OD1 74.4 REMARK 620 3 ASP A 90 OD1 89.0 70.6 REMARK 620 4 TRP A 92 O 78.0 137.9 77.9 REMARK 620 5 GLU A 94 OE1 142.1 85.2 114.1 134.0 REMARK 620 6 GLU A 94 OE2 153.7 125.3 83.1 75.9 62.8 REMARK 620 7 GLU A 97 OE1 88.7 81.0 151.0 129.6 56.3 110.0 REMARK 620 8 GLU A 97 OE2 77.3 121.4 157.3 81.6 87.2 101.2 48.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TB A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TB A 501 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE INSERTED RESIDUES AT THE N-TERMINUS OF THE PROTEIN REMARK 999 CORRESPOND TO A 32-RESIDUE DSE3 LANTHIDE-BINDING TAG REMARK 999 THE RESIDUES NUMBERED 66 TO 100 IN THIS ENTRY CORRESPOND REMARK 999 TO RESIDUES -4 TO 13 AND -1' TO 15' IN THE PRIMARY CITATION. DBREF 2OJR A 101 176 UNP P62988 UBIQ_HUMAN 1 76 SEQADV 2OJR GLY A 66 UNP P62988 CLONING ARTIFACT SEQADV 2OJR PRO A 67 UNP P62988 CLONING ARTIFACT SEQADV 2OJR GLY A 68 UNP P62988 CLONING ARTIFACT SEQADV 2OJR TYR A 69 UNP P62988 SEE REMARK 999 SEQADV 2OJR ILE A 70 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASP A 71 UNP P62988 SEE REMARK 999 SEQADV 2OJR THR A 72 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASN A 73 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASN A 74 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASP A 75 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLY A 76 UNP P62988 SEE REMARK 999 SEQADV 2OJR TRP A 77 UNP P62988 SEE REMARK 999 SEQADV 2OJR ILE A 78 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLU A 79 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLY A 80 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASP A 81 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLU A 82 UNP P62988 SEE REMARK 999 SEQADV 2OJR LEU A 83 UNP P62988 SEE REMARK 999 SEQADV 2OJR TYR A 84 UNP P62988 SEE REMARK 999 SEQADV 2OJR ILE A 85 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASP A 86 UNP P62988 SEE REMARK 999 SEQADV 2OJR THR A 87 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASN A 88 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASN A 89 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASP A 90 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLY A 91 UNP P62988 SEE REMARK 999 SEQADV 2OJR TRP A 92 UNP P62988 SEE REMARK 999 SEQADV 2OJR ILE A 93 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLU A 94 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLY A 95 UNP P62988 SEE REMARK 999 SEQADV 2OJR ASP A 96 UNP P62988 SEE REMARK 999 SEQADV 2OJR GLU A 97 UNP P62988 SEE REMARK 999 SEQADV 2OJR LEU A 98 UNP P62988 SEE REMARK 999 SEQADV 2OJR LEU A 99 UNP P62988 SEE REMARK 999 SEQADV 2OJR ALA A 100 UNP P62988 SEE REMARK 999 SEQRES 1 A 111 GLY PRO GLY TYR ILE ASP THR ASN ASN ASP GLY TRP ILE SEQRES 2 A 111 GLU GLY ASP GLU LEU TYR ILE ASP THR ASN ASN ASP GLY SEQRES 3 A 111 TRP ILE GLU GLY ASP GLU LEU LEU ALA MET GLN ILE PHE SEQRES 4 A 111 VAL LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL SEQRES 5 A 111 GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE SEQRES 6 A 111 GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU SEQRES 7 A 111 ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SEQRES 8 A 111 SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU SEQRES 9 A 111 VAL LEU ARG LEU ARG GLY GLY HET TB A 500 1 HET TB A 501 1 HETNAM TB TERBIUM(III) ION FORMUL 2 TB 2(TB 3+) FORMUL 4 HOH *17(H2 O) HELIX 1 1 GLU A 79 ASP A 81 5 3 HELIX 2 2 GLU A 94 LEU A 98 5 5 HELIX 3 3 THR A 122 GLY A 135 1 14 SHEET 1 A 2 PRO A 67 TYR A 69 0 SHEET 2 A 2 LEU A 83 ILE A 85 -1 O TYR A 84 N GLY A 68 SHEET 1 B 5 THR A 112 VAL A 117 0 SHEET 2 B 5 MET A 101 LYS A 106 -1 N ILE A 103 O LEU A 115 SHEET 3 B 5 THR A 166 LEU A 171 1 O LEU A 167 N LYS A 106 SHEET 4 B 5 GLN A 141 PHE A 145 -1 N ILE A 144 O HIS A 168 SHEET 5 B 5 LYS A 148 GLN A 149 -1 O LYS A 148 N PHE A 145 LINK OD1 ASP A 71 TB TB A 500 1555 1555 2.19 LINK OD1 ASN A 73 TB TB A 500 1555 1555 2.16 LINK OD1 ASP A 75 TB TB A 500 1555 1555 2.71 LINK O TRP A 77 TB TB A 500 1555 1555 2.30 LINK OE1 GLU A 79 TB TB A 500 1555 1555 2.19 LINK OE2 GLU A 79 TB TB A 500 1555 1555 2.44 LINK OE1 GLU A 82 TB TB A 500 1555 1555 2.71 LINK OE2 GLU A 82 TB TB A 500 1555 1555 2.50 LINK OD2 ASP A 86 TB TB A 501 1555 1555 2.09 LINK OD1 ASN A 88 TB TB A 501 1555 1555 2.29 LINK OD1 ASP A 90 TB TB A 501 1555 1555 2.24 LINK O TRP A 92 TB TB A 501 1555 1555 2.41 LINK OE1 GLU A 94 TB TB A 501 1555 1555 2.13 LINK OE2 GLU A 94 TB TB A 501 1555 1555 2.04 LINK OE1 GLU A 97 TB TB A 501 1555 1555 2.95 LINK OE2 GLU A 97 TB TB A 501 1555 1555 1.98 SITE 1 AC1 6 ASP A 71 ASN A 73 ASP A 75 TRP A 77 SITE 2 AC1 6 GLU A 79 GLU A 82 SITE 1 AC2 6 ASP A 86 ASN A 88 ASP A 90 TRP A 92 SITE 2 AC2 6 GLU A 94 GLU A 97 CRYST1 57.870 57.870 115.260 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017280 0.009977 0.000000 0.00000 SCALE2 0.000000 0.019953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008676 0.00000