HEADER METAL BINDING PROTEIN, OXIDOREDUCTASE 15-JAN-07 2OJV TITLE CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF GOAT LACTOPEROXIDASE WITH TITLE 2 CYANIDE AND IODIDE IONS AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-595; COMPND 5 EC: 1.11.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAPRA HIRCUS; SOURCE 3 ORGANISM_COMMON: GOAT; SOURCE 4 ORGANISM_TAXID: 9925 KEYWDS CYANIDE, COMPLEX, HEAM, METAL BINDING PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,N.SINGH,S.B.SINGH,S.SHARMA,P.KAUR,T.P.SINGH REVDAT 6 25-OCT-23 2OJV 1 HETSYN REVDAT 5 29-JUL-20 2OJV 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 18-OCT-17 2OJV 1 REMARK REVDAT 3 13-JUL-11 2OJV 1 VERSN REVDAT 2 24-FEB-09 2OJV 1 VERSN REVDAT 1 30-JAN-07 2OJV 0 JRNL AUTH A.K.SINGH,N.SINGH,S.B.SINGH,S.SHARMA,P.KAUR,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF GOAT JRNL TITL 2 LACTOPEROXIDASE WITH CYANIDE AND IODIDE IONS AT 2.4 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 203 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.607 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.212 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5099 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6957 ; 1.980 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 4.448 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 867 ;19.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3886 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2385 ; 0.260 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 477 ; 0.189 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.138 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.212 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.313 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2980 ; 0.890 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4809 ; 1.681 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 2.381 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2148 ; 3.942 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 292 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54132 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 74.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2GJ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.40550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 170 N PRO A 170 CA 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 9 C - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 PRO A 11 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO A 11 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 LEU A 12 C - N - CA ANGL. DEV. = -22.0 DEGREES REMARK 500 VAL A 13 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 PRO A 170 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO A 170 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 TYR A 172 CA - CB - CG ANGL. DEV. = -18.7 DEGREES REMARK 500 PRO A 228 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PRO A 487 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 129.52 -28.67 REMARK 500 PRO A 9 -167.15 -63.59 REMARK 500 GLN A 18 21.82 -157.86 REMARK 500 ALA A 56 -15.06 -161.52 REMARK 500 GLU A 118 -90.62 -128.23 REMARK 500 SER A 122 112.60 -175.72 REMARK 500 ASP A 137 -144.86 51.46 REMARK 500 CYS A 167 -121.97 54.89 REMARK 500 PRO A 168 -143.97 -57.49 REMARK 500 THR A 169 -29.85 -144.07 REMARK 500 TYR A 172 -165.48 78.24 REMARK 500 GLN A 173 67.64 168.77 REMARK 500 SER A 174 -122.83 -119.67 REMARK 500 ASP A 188 18.89 -141.35 REMARK 500 PRO A 209 25.45 -70.01 REMARK 500 ASN A 231 33.32 -86.82 REMARK 500 THR A 242 -26.37 -38.88 REMARK 500 PRO A 367 126.93 -35.07 REMARK 500 ASP A 389 51.95 -147.23 REMARK 500 HIS A 426 -168.10 -100.51 REMARK 500 THR A 486 140.03 164.52 REMARK 500 GLU A 594 -88.41 -66.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 O REMARK 620 2 ASP A 110 OD1 71.7 REMARK 620 3 THR A 184 O 78.8 139.4 REMARK 620 4 THR A 184 OG1 132.6 151.2 68.6 REMARK 620 5 PHE A 186 O 116.7 81.5 87.8 96.0 REMARK 620 6 ASP A 188 OD1 144.6 78.4 136.4 73.1 76.0 REMARK 620 7 SER A 190 OG 83.1 87.7 116.0 81.4 152.5 77.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A2853 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 351 NE2 REMARK 620 2 HEM A2853 NA 96.8 REMARK 620 3 HEM A2853 NB 93.8 87.0 REMARK 620 4 HEM A2853 NC 97.6 165.5 90.4 REMARK 620 5 HEM A2853 ND 95.9 92.8 170.3 87.3 REMARK 620 6 CYN A2844 C 173.4 80.0 80.3 85.5 90.1 REMARK 620 7 CYN A2844 N 163.7 67.4 89.6 98.3 81.4 15.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF BOVINE LACTOPEROXIDASE REMARK 900 WITH THIOCYANATE AND IODIDE AT 3.1 A RESOLUTION REMARK 900 RELATED ID: 2NQX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE WITH IODIDE IONS AT 2.9 REMARK 900 A RESOLUTION DBREF 2OJV A 1 595 UNP A3F9D6 A3F9D6_CAPHI 118 712 SEQRES 1 A 595 SER TRP GLU VAL GLY CYS GLY ALA PRO VAL PRO LEU VAL SEQRES 2 A 595 THR CYS ASP GLU GLN SER PRO TYR ARG THR ILE THR GLY SEQRES 3 A 595 ASP CYS ASN ASN ARG ARG SER PRO ALA LEU GLY ALA ALA SEQRES 4 A 595 ASN ARG ALA LEU ALA ARG TRP LEU PRO ALA GLU TYR GLU SEQRES 5 A 595 ASP GLY LEU ALA VAL PRO PHE GLY TRP THR GLN ARG LYS SEQRES 6 A 595 THR ARG ASN GLY PHE ARG VAL PRO LEU ALA ARG GLU VAL SEQRES 7 A 595 SER ASN LYS ILE VAL GLY TYR LEU ASP GLU GLU GLY VAL SEQRES 8 A 595 LEU ASP GLN ASN ARG SER LEU LEU PHE MET GLN TRP GLY SEQRES 9 A 595 GLN ILE VAL ASP HIS ASP LEU ASP PHE ALA PRO GLU THR SEQRES 10 A 595 GLU LEU GLY SER SER GLU HIS SER LYS VAL GLN CYS GLU SEQRES 11 A 595 GLU TYR CYS VAL GLN GLY ASP GLU CYS PHE PRO ILE MET SEQRES 12 A 595 PHE PRO LYS ASN ASP PRO LYS LEU LYS THR GLN GLY LYS SEQRES 13 A 595 CYS MET PRO PHE PHE ARG ALA GLY PHE VAL CYS PRO THR SEQRES 14 A 595 PRO PRO TYR GLN SER LEU ALA ARG ASP GLN ILE ASN ALA SEQRES 15 A 595 VAL THR SER PHE LEU ASP ALA SER LEU VAL TYR GLY SER SEQRES 16 A 595 GLU PRO SER LEU ALA SER ARG LEU ARG ASN LEU SER SER SEQRES 17 A 595 PRO LEU GLY LEU MET ALA VAL ASN GLN GLU ALA TRP ASP SEQRES 18 A 595 HIS GLY LEU ALA TYR PRO PRO PHE ASN ASN VAL LYS PRO SEQRES 19 A 595 SER PRO CYS GLU PHE ILE ASN THR THR ALA HIS VAL PRO SEQRES 20 A 595 CYS PHE GLN ALA GLY ASP SER ARG ALA SER GLU GLN ILE SEQRES 21 A 595 LEU LEU ALA THR VAL HIS THR LEU LEU LEU ARG GLU HIS SEQRES 22 A 595 ASN ARG LEU ALA ARG GLU LEU LYS ARG LEU ASN PRO HIS SEQRES 23 A 595 TRP ASP GLY GLU MET LEU TYR GLN GLU ALA ARG LYS ILE SEQRES 24 A 595 LEU GLY ALA PHE ILE GLN ILE ILE THR PHE ARG ASP TYR SEQRES 25 A 595 LEU PRO ILE VAL LEU GLY SER GLU MET GLN LYS TRP ILE SEQRES 26 A 595 PRO PRO TYR GLN GLY TYR ASN ASN SER VAL ASP PRO ARG SEQRES 27 A 595 ILE SER ASN VAL PHE THR PHE ALA PHE ARG PHE GLY HIS SEQRES 28 A 595 MET GLU VAL PRO SER THR VAL SER ARG LEU ASP GLU ASN SEQRES 29 A 595 TYR GLN PRO TRP GLY PRO GLU ALA GLU LEU PRO LEU HIS SEQRES 30 A 595 THR LEU PHE PHE ASN THR TRP ARG ILE ILE LYS ASP GLY SEQRES 31 A 595 GLY ILE ASP PRO LEU VAL ARG GLY LEU LEU ALA LYS ASN SEQRES 32 A 595 SER LYS LEU MET ASN GLN ASN LYS MET VAL THR SER GLU SEQRES 33 A 595 LEU ARG ASN LYS LEU PHE GLN PRO THR HIS LYS VAL HIS SEQRES 34 A 595 GLY PHE ASP LEU ALA ALA ILE ASN LEU GLN ARG CYS ARG SEQRES 35 A 595 ASP HIS GLY MET PRO GLY TYR ASN SER TRP ARG GLY PHE SEQRES 36 A 595 CYS GLY LEU SER GLN PRO LYS THR LEU LYS GLY LEU GLN SEQRES 37 A 595 ALA VAL LEU LYS ASN LYS VAL LEU ALA LYS LYS LEU LEU SEQRES 38 A 595 ASP LEU TYR LYS THR PRO ASP ASN ILE ASP ILE TRP ILE SEQRES 39 A 595 GLY GLY ASN ALA GLU PRO MET VAL GLU ARG GLY ARG VAL SEQRES 40 A 595 GLY PRO LEU LEU ALA CYS LEU LEU GLY ARG GLN PHE GLN SEQRES 41 A 595 GLN ILE ARG ASP GLY ASP ARG PHE TRP TRP GLU ASN PRO SEQRES 42 A 595 GLY VAL PHE THR GLU LYS GLN ARG ASP SER LEU GLN LYS SEQRES 43 A 595 VAL SER PHE SER ARG LEU ILE CYS ASP ASN THR HIS ILE SEQRES 44 A 595 THR LYS VAL PRO LEU HIS ALA PHE GLN ALA ASN ASN TYR SEQRES 45 A 595 PRO HIS ASP PHE VAL ASP CYS SER ALA VAL ASP LYS LEU SEQRES 46 A 595 ASP LEU SER PRO TRP ALA SER ARG GLU ASN MODRES 2OJV ASN A 95 ASN GLYCOSYLATION SITE MODRES 2OJV ASN A 205 ASN GLYCOSYLATION SITE MODRES 2OJV ASN A 241 ASN GLYCOSYLATION SITE MODRES 2OJV ASN A 332 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET CA A 701 1 HET CYN A2844 2 HET CO3 A 688 4 HET IOD A2845 1 HET IOD A2846 1 HET IOD A2847 1 HET IOD A2848 1 HET IOD A2849 1 HET IOD A2850 1 HET IOD A2851 1 HET IOD A2852 1 HET HEM A2853 43 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM CYN CYANIDE ION HETNAM CO3 CARBONATE ION HETNAM IOD IODIDE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 MAN 3(C6 H12 O6) FORMUL 6 CA CA 2+ FORMUL 7 CYN C N 1- FORMUL 8 CO3 C O3 2- FORMUL 9 IOD 8(I 1-) FORMUL 17 HEM C34 H32 FE N4 O4 FORMUL 18 HOH *406(H2 O) HELIX 1 1 LEU A 74 VAL A 83 1 10 HELIX 2 2 LEU A 98 ASP A 112 1 15 HELIX 3 3 ASP A 148 GLN A 154 1 7 HELIX 4 4 ALA A 189 GLY A 194 1 6 HELIX 5 5 GLU A 196 LEU A 203 1 8 HELIX 6 6 SER A 235 ILE A 240 1 6 HELIX 7 7 GLN A 259 ASN A 284 1 26 HELIX 8 8 ASP A 288 TYR A 312 1 25 HELIX 9 9 TYR A 312 GLY A 318 1 7 HELIX 10 10 GLU A 320 ILE A 325 1 6 HELIX 11 11 VAL A 342 PHE A 347 1 6 HELIX 12 12 ARG A 348 VAL A 354 5 7 HELIX 13 13 HIS A 377 PHE A 380 5 4 HELIX 14 14 THR A 383 LYS A 388 1 6 HELIX 15 15 ILE A 392 LYS A 402 1 11 HELIX 16 16 THR A 414 ASN A 419 1 6 HELIX 17 17 ASP A 432 HIS A 444 1 13 HELIX 18 18 GLY A 448 CYS A 456 1 9 HELIX 19 19 THR A 463 LYS A 472 1 10 HELIX 20 20 ASN A 473 LYS A 485 1 13 HELIX 21 21 THR A 486 ILE A 490 5 5 HELIX 22 22 ASP A 491 GLU A 499 1 9 HELIX 23 23 GLY A 508 GLY A 525 1 18 HELIX 24 24 THR A 537 GLN A 545 1 9 HELIX 25 25 SER A 548 THR A 557 1 10 HELIX 26 26 SER A 580 VAL A 582 5 3 HELIX 27 27 LEU A 587 ALA A 591 5 5 SHEET 1 A 2 ARG A 41 ALA A 42 0 SHEET 2 A 2 ILE A 180 ASN A 181 -1 O ASN A 181 N ARG A 41 SHEET 1 B 2 LEU A 92 SER A 97 0 SHEET 2 B 2 ASN A 403 LYS A 405 -1 O SER A 404 N ASP A 93 SHEET 1 C 2 ILE A 142 MET A 143 0 SHEET 2 C 2 CYS A 157 MET A 158 -1 O MET A 158 N ILE A 142 SHEET 1 D 2 ARG A 204 ASN A 205 0 SHEET 2 D 2 LEU A 212 MET A 213 -1 O LEU A 212 N ASN A 205 SHEET 1 E 2 THR A 357 SER A 359 0 SHEET 2 E 2 GLU A 373 PRO A 375 -1 O LEU A 374 N VAL A 358 SHEET 1 F 2 LEU A 421 PHE A 422 0 SHEET 2 F 2 HIS A 429 PHE A 431 -1 O PHE A 431 N LEU A 421 SHEET 1 G 2 LYS A 561 VAL A 562 0 SHEET 2 G 2 VAL A 577 ASP A 578 -1 O VAL A 577 N VAL A 562 SSBOND 1 CYS A 6 CYS A 167 1555 1555 2.09 SSBOND 2 CYS A 15 CYS A 28 1555 1555 2.54 SSBOND 3 CYS A 129 CYS A 139 1555 1555 2.01 SSBOND 4 CYS A 133 CYS A 157 1555 1555 2.04 SSBOND 5 CYS A 237 CYS A 248 1555 1555 2.04 SSBOND 6 CYS A 456 CYS A 513 1555 1555 1.99 SSBOND 7 CYS A 554 CYS A 579 1555 1555 2.01 LINK ND2 ASN A 95 C1 NAG B 1 1555 1555 1.44 LINK OD2 ASP A 108 CMD HEM A2853 1555 1555 1.51 LINK ND2 ASN A 205 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG D 1 1555 1555 1.45 LINK OE2 GLU A 258 CMB HEM A2853 1555 1555 1.55 LINK ND2 ASN A 332 C1 NAG E 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O ASP A 110 CA CA A 701 1555 1555 2.27 LINK OD1 ASP A 110 CA CA A 701 1555 1555 2.28 LINK O THR A 184 CA CA A 701 1555 1555 2.59 LINK OG1 THR A 184 CA CA A 701 1555 1555 2.60 LINK O PHE A 186 CA CA A 701 1555 1555 2.31 LINK OD1 ASP A 188 CA CA A 701 1555 1555 2.55 LINK OG SER A 190 CA CA A 701 1555 1555 2.51 LINK NE2 HIS A 351 FE HEM A2853 1555 1555 2.05 LINK C CYN A2844 FE HEM A2853 1555 1555 2.03 LINK N CYN A2844 FE HEM A2853 1555 1555 2.97 CISPEP 1 LYS A 233 PRO A 234 0 0.56 CISPEP 2 TYR A 572 PRO A 573 0 -2.46 CRYST1 54.197 80.811 77.047 90.00 102.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018451 0.000000 0.004246 0.00000 SCALE2 0.000000 0.012375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013318 0.00000