HEADER COMPLEX (BINDING PROTEIN/PEPTIDE) 10-SEP-95 2OLB TITLE OLIGOPEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH TRI- TITLE 2 LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGO-PEPTIDE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OPPA; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRIPEPTIDE LYS-LYS-LYS; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CO-CRYSTALLIZED WITH URANIUM ACETATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 MOL_ID: 2 KEYWDS PERIPLASMIC, COMPLEX (BINDING PROTEIN/PEPTIDE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.TAME,A.J.WILKINSON REVDAT 2 24-FEB-09 2OLB 1 VERSN REVDAT 1 29-JAN-96 2OLB 0 SPRSDE 29-JAN-96 2OLB 1OLB JRNL AUTH J.R.TAME,E.J.DODSON,G.MURSHUDOV,C.F.HIGGINS, JRNL AUTH 2 A.J.WILKINSON JRNL TITL THE CRYSTAL STRUCTURES OF THE OLIGOPEPTIDE-BINDING JRNL TITL 2 PROTEIN OPPA COMPLEXED WITH TRIPEPTIDE AND JRNL TITL 3 TETRAPEPTIDE LIGANDS. JRNL REF STRUCTURE V. 3 1395 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 8747465 JRNL DOI 10.1016/S0969-2126(01)00276-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.D.GLOVER,R.DENNY,N.D.NGUTI,S.MCSWEENEY, REMARK 1 AUTH 2 A.THOMPSON,E.DODSON,A.J.WILKINSON,J.R.H.TAME REMARK 1 TITL STRUCTURE DETERMINATION OF OPPA AT 2.3 ANGSTROMS REMARK 1 TITL 2 RESOLUTION USING MULTIPLE WAVELENGTH ANOMALOUS REMARK 1 TITL 3 METHODS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 51 39 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.R.H.TAME,G.MURSHUDOV,T.NEIL,E.DODSON,G.G.DODSON, REMARK 1 AUTH 2 C.F.HIGGINS,A.J.WILKINSON REMARK 1 TITL THE STRUCTURAL BASIS OF SEQUENCE-INDEPENDENT REMARK 1 TITL 2 PEPTIDE BINDING BY OPPA PROTEIN REMARK 1 REF SCIENCE V. 264 1578 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 101686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 549 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.025 REMARK 3 ANGLE DISTANCE (A) : 0.029 ; 0.035 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.034 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.137 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.180 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.256 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.198 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 1.884 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 16.103; 20.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.946 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.646 ; 6.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.704 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.779 ; 10.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIX ACETATE IONS HAVE BEEN MODELED REMARK 3 INTO THE ELECTRON DENSITY. ACETATE 1 IS FOUND AT THE SAME REMARK 3 POSITION AS THE CARBOXYL GROUP OF A BOUND TETRAPEPTIDE LIGAND. REMARK 3 ACETATE 2 IS FOUND AT THE POSITION WHERE THE CARBOXYL GROUP OF REMARK 3 A BOUND PENTAPEPTIDE LIGAND IS BELIEVED TO LIE. THE REMAINING REMARK 3 ACETATES ARE FOUND AT THE SURFACE CLOSE TO URANYL IONS AND REMARK 3 HAVE RELATIVELY POOR DENSITY. SOLVENT STRUCTURE AROUND THE REMARK 3 URANYL IONS IS TENTATIVE. REMARK 4 REMARK 4 2OLB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 123; 123 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SRS; ROTATING ANODE REMARK 200 BEAMLINE : PX9.6; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.875; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; SIEMENS-NICOLET REMARK 200 X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 17.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE DATA SET USED WAS COLLECTED FROM MORE THAN ONE REMARK 200 CRYSTAL, AS DESCRIBED IN THE JRNL ARTICLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CH3 ACT A 529 O HOH A 627 1.90 REMARK 500 CH3 ACT A 530 O HOH A 776 1.91 REMARK 500 O2 IUM A 519 O HOH A 643 2.02 REMARK 500 U IUM A 523 O HOH A 673 2.04 REMARK 500 O HOH A 718 O HOH A 736 2.07 REMARK 500 CG1 VAL A 160 O HOH A 621 2.07 REMARK 500 U IUM A 519 O HOH A 578 2.09 REMARK 500 O HOH A 627 O HOH A 776 2.10 REMARK 500 O HOH A 776 O HOH A 814 2.13 REMARK 500 U IUM A 519 O HOH A 623 2.15 REMARK 500 O HOH A 688 O HOH A 844 2.15 REMARK 500 CH3 ACT A 528 O HOH A 768 2.15 REMARK 500 O HOH A 627 O HOH A 668 2.16 REMARK 500 CH3 ACT A 528 O HOH A 701 2.17 REMARK 500 U IUM A 523 O HOH A 813 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 569 O HOH A 668 3555 2.11 REMARK 500 O HOH A 569 O HOH A 586 3555 2.14 REMARK 500 O HOH A 628 O HOH A 653 3545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 206 CD - NE - CZ ANGL. DEV. = 22.5 DEGREES REMARK 500 ARG A 235 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 269 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 269 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 GLU A 329 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 GLU A 329 OE1 - CD - OE2 ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP A 369 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR A 485 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 TYR A 485 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 79.42 -102.67 REMARK 500 GLU A 200 -61.30 -131.41 REMARK 500 PRO A 225 41.58 -104.53 REMARK 500 ASN A 246 45.24 -99.27 REMARK 500 THR A 367 118.69 -37.67 REMARK 500 SER A 368 145.73 -177.43 REMARK 500 THR A 408 57.18 -94.50 REMARK 500 ASP A 410 -71.44 -103.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 866 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 6.67 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 FIVE OF THE EIGHT URANIUM IONS HAVE ASSOCIATED OXYGEN ATOMS REMARK 600 IN THE MODEL. THE GEOMETRY OF THESE URANYL IONS HAS NOT REMARK 600 BEEN RESTRAINED OR MANUALLY MODIFIED. THE (O-U-O)2+ ION REMARK 600 SHOULD BE LINEAR WITH AN O-U DISTANCE OF APPROXIMATELY 1.8 REMARK 600 ANGSTROMS. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IUM A 523 REMARK 610 IUM A 524 REMARK 610 IUM A 525 REMARK 700 REMARK 700 SHEET REMARK 700 THE HELIX AND SHEET RECORDS PRESENTED HERE ARE SIMPLIFIED REMARK 700 TO HELP NAVIGATE AROUND THE PROTEIN AND TO AVOID OBSCURING REMARK 700 TOPOLOGICAL RELATIONSHIPS WITH RELATED PROTEINS. IT IS NOT REMARK 700 INTENDED TO REPLACE THE LIST WHICH THE PDB HAS GENERATED REMARK 700 USING DSSP WHICH APPEAR ON ACTUAL HELIX AND SHEET RECORDS REMARK 700 FURTHER DOWN IN THE ENTRY. BECAUSE OF LINE LENGTH REMARK 700 LIMITATIONS THE FORMAT OF THE SHEET INFORMATION PRESENTED REMARK 700 IN THIS REMARK HAS BEEN MODIFIED. REMARK 700 HELIX 1 1 VAL A 34 LEU A 43 1 REMARK 700 HELIX 2 2 HIS A 91 ALA A 101 1 REMARK 700 HELIX 3 3 TYR A 112 GLY A 116 1 REMARK 700 HELIX 4 4 ILE A 121 ALA A 126 1 REMARK 700 HELIX 5 5 LYS A 169 PHE A 175 1 REMARK 700 HELIX 6 6 GLU A 229 SER A 238 1 REMARK 700 HELIX 7 7 ILE A 250 GLU A 259 1 REMARK 700 HELIX 8 8 VAL A 287 ALA A 296 1 REMARK 700 HELIX 9 9 ARG A 299 LYS A 305 1 REMARK 700 HELIX 10 10 GLN A 337 ALA A 351 1 REMARK 700 HELIX 11 11 ASP A 369 LEU A 386 1 REMARK 700 HELIX 12 12 TRP A 397 GLN A 406 1 REMARK 700 HELIX 13 13 THR A 424 LEU A 427 1 REMARK 700 HELIX 14 14 PRO A 444 LYS A 455 1 REMARK 700 HELIX 15 15 ASP A 459 ASP A 476 1 REMARK 700 SH 1 A 7 VAL A 264 PRO A 268 0 REMARK 700 SH 2 A 7 VAL A 486 LEU A 490 -1 N ARG A 489 O ARG A 265 REMARK 700 SH 3 A 7 ASP A 242 TYR A 245 -1 N THR A 244 O LEU A 490 REMARK 700 SH 4 A 7 THR A 14 ASN A 18 1 N ASN A 18 O MET A 243 REMARK 700 SH 5 A 7 GLN A 220 LEU A 224 1 N GLN A 220 O LEU A 15 REMARK 700 SH 6 A 7 ARG A 201 ARG A 206 -1 N LEU A 204 O VAL A 221 REMARK 700 SH 7 A 7 TYR A 191 VAL A 197 -1 N VAL A 197 O ARG A 201 REMARK 700 SH 1 B 4 ALA A 61 LYS A 67 0 REMARK 700 SH 2 B 4 VAL A 71 LEU A 76 -1 N HIS A 75 O GLU A 62 REMARK 700 SH 3 B 4 THR A 143 THR A 147 -1 N VAL A 146 O TRP A 72 REMARK 700 SH 4 B 4 VAL A 136 ASP A 140 -1 N ASP A 140 O THR A 143 REMARK 700 SH 1 C 5 ASN A 389 GLN A 395 0 REMARK 700 SH 2 C 5 THR A 360 ASN A 366 1 O TYR A 365 N GLN A 395 REMARK 700 SH 3 C 5 VAL A 411 CYS A 417 1 O VAL A 411 N LEU A 364 REMARK 700 SH 4 C 5 CYS A 271 ILE A 277 -1 N GLU A 276 O ALA A 412 REMARK 700 SH 5 C 5 ILE A 479 TYR A 484 -1 N TYR A 483 O TYR A 273 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 518 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 519 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 520 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 521 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 522 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 523 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 524 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 525 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 526 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 527 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 528 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 529 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 530 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 531 DBREF 2OLB A 1 517 UNP P06202 OPPA_SALTY 26 542 DBREF 2OLB B 1 3 PDB 2OLB 2OLB 1 3 SEQRES 1 A 517 ALA ASP VAL PRO ALA GLY VAL GLN LEU ALA ASP LYS GLN SEQRES 2 A 517 THR LEU VAL ARG ASN ASN GLY SER GLU VAL GLN SER LEU SEQRES 3 A 517 ASP PRO HIS LYS ILE GLU GLY VAL PRO GLU SER ASN VAL SEQRES 4 A 517 SER ARG ASP LEU PHE GLU GLY LEU LEU ILE SER ASP VAL SEQRES 5 A 517 GLU GLY HIS PRO SER PRO GLY VAL ALA GLU LYS TRP GLU SEQRES 6 A 517 ASN LYS ASP PHE LYS VAL TRP THR PHE HIS LEU ARG GLU SEQRES 7 A 517 ASN ALA LYS TRP SER ASP GLY THR PRO VAL THR ALA HIS SEQRES 8 A 517 ASP PHE VAL TYR SER TRP GLN ARG LEU ALA ASP PRO ASN SEQRES 9 A 517 THR ALA SER PRO TYR ALA SER TYR LEU GLN TYR GLY HIS SEQRES 10 A 517 ILE ALA ASN ILE ASP ASP ILE ILE ALA GLY LYS LYS PRO SEQRES 11 A 517 ALA THR ASP LEU GLY VAL LYS ALA LEU ASP ASP HIS THR SEQRES 12 A 517 PHE GLU VAL THR LEU SER GLU PRO VAL PRO TYR PHE TYR SEQRES 13 A 517 LYS LEU LEU VAL HIS PRO SER VAL SER PRO VAL PRO LYS SEQRES 14 A 517 SER ALA VAL GLU LYS PHE GLY ASP LYS TRP THR GLN PRO SEQRES 15 A 517 ALA ASN ILE VAL THR ASN GLY ALA TYR LYS LEU LYS ASN SEQRES 16 A 517 TRP VAL VAL ASN GLU ARG ILE VAL LEU GLU ARG ASN PRO SEQRES 17 A 517 GLN TYR TRP ASP ASN ALA LYS THR VAL ILE ASN GLN VAL SEQRES 18 A 517 THR TYR LEU PRO ILE SER SER GLU VAL THR ASP VAL ASN SEQRES 19 A 517 ARG TYR ARG SER GLY GLU ILE ASP MET THR TYR ASN ASN SEQRES 20 A 517 MET PRO ILE GLU LEU PHE GLN LYS LEU LYS LYS GLU ILE SEQRES 21 A 517 PRO ASN GLU VAL ARG VAL ASP PRO TYR LEU CYS THR TYR SEQRES 22 A 517 TYR TYR GLU ILE ASN ASN GLN LYS ALA PRO PHE ASN ASP SEQRES 23 A 517 VAL ARG VAL ARG THR ALA LEU LYS LEU ALA LEU ASP ARG SEQRES 24 A 517 ASP ILE ILE VAL ASN LYS VAL LYS ASN GLN GLY ASP LEU SEQRES 25 A 517 PRO ALA TYR SER TYR THR PRO PRO TYR THR ASP GLY ALA SEQRES 26 A 517 LYS LEU VAL GLU PRO GLU TRP PHE LYS TRP SER GLN GLN SEQRES 27 A 517 LYS ARG ASN GLU GLU ALA LYS LYS LEU LEU ALA GLU ALA SEQRES 28 A 517 GLY PHE THR ALA ASP LYS PRO LEU THR PHE ASP LEU LEU SEQRES 29 A 517 TYR ASN THR SER ASP LEU HIS LYS LYS LEU ALA ILE ALA SEQRES 30 A 517 VAL ALA SER ILE TRP LYS LYS ASN LEU GLY VAL ASN VAL SEQRES 31 A 517 ASN LEU GLU ASN GLN GLU TRP LYS THR PHE LEU ASP THR SEQRES 32 A 517 ARG HIS GLN GLY THR PHE ASP VAL ALA ARG ALA GLY TRP SEQRES 33 A 517 CYS ALA ASP TYR ASN GLU PRO THR SER PHE LEU ASN THR SEQRES 34 A 517 MET LEU SER ASP SER SER ASN ASN THR ALA HIS TYR LYS SEQRES 35 A 517 SER PRO ALA PHE ASP LYS LEU ILE ALA ASP THR LEU LYS SEQRES 36 A 517 VAL ALA ASP ASP THR GLN ARG SER GLU LEU TYR ALA LYS SEQRES 37 A 517 ALA GLU GLN GLN LEU ASP LYS ASP SER ALA ILE VAL PRO SEQRES 38 A 517 VAL TYR TYR TYR VAL ASN ALA ARG LEU VAL LYS PRO TRP SEQRES 39 A 517 VAL GLY GLY TYR THR GLY LYS ASP PRO LEU ASP ASN ILE SEQRES 40 A 517 TYR VAL LYS ASN LEU TYR ILE ILE LYS HIS SEQRES 1 B 3 LYS LYS LYS HET IUM A 518 3 HET IUM A 519 3 HET IUM A 520 3 HET IUM A 521 3 HET IUM A 522 3 HET IUM A 523 1 HET IUM A 524 1 HET IUM A 525 1 HET ACT A 526 4 HET ACT A 527 4 HET ACT A 528 4 HET ACT A 529 4 HET ACT A 530 4 HET ACT A 531 4 HETNAM IUM URANYL (VI) ION HETNAM ACT ACETATE ION FORMUL 3 IUM 8(O2 U 2+) FORMUL 11 ACT 6(C2 H3 O2 1-) FORMUL 17 HOH *549(H2 O) HELIX 1 1 VAL A 34 LEU A 43 1 10 HELIX 2 2 ALA A 90 ALA A 101 1 12 HELIX 3 3 PRO A 103 THR A 105 5 3 HELIX 4 4 ALA A 110 TYR A 115 5 6 HELIX 5 5 ILE A 121 ILE A 125 1 5 HELIX 6 6 ALA A 131 ASP A 133 5 3 HELIX 7 7 PHE A 155 VAL A 160 5 6 HELIX 8 8 PRO A 162 VAL A 164 5 3 HELIX 9 9 LYS A 169 LYS A 178 1 10 HELIX 10 10 ASN A 213 LYS A 215 5 3 HELIX 11 11 GLU A 229 ARG A 237 1 9 HELIX 12 12 PHE A 253 GLU A 259 1 7 HELIX 13 13 PRO A 261 GLU A 263 5 3 HELIX 14 14 VAL A 287 ALA A 296 1 10 HELIX 15 15 ARG A 299 ASN A 304 1 6 HELIX 16 16 GLU A 331 PHE A 333 5 3 HELIX 17 17 GLN A 337 GLU A 350 1 14 HELIX 18 18 ASP A 369 LEU A 386 1 18 HELIX 19 19 TRP A 397 GLN A 406 1 10 HELIX 20 20 PRO A 423 MET A 430 5 8 HELIX 21 21 PRO A 444 LEU A 454 1 11 HELIX 22 22 ASP A 459 LYS A 475 1 17 HELIX 23 23 VAL A 509 ASN A 511 5 3 SHEET 1 A 4 THR A 14 ASN A 18 0 SHEET 2 A 4 GLN A 220 LEU A 224 1 N GLN A 220 O LEU A 15 SHEET 3 A 4 ARG A 201 ARG A 206 -1 N LEU A 204 O VAL A 221 SHEET 4 A 4 TYR A 191 VAL A 197 -1 N VAL A 197 O ARG A 201 SHEET 1 B 2 LEU A 48 SER A 50 0 SHEET 2 B 2 PRO A 56 PRO A 58 -1 N SER A 57 O ILE A 49 SHEET 1 C 4 ALA A 61 LYS A 67 0 SHEET 2 C 4 VAL A 71 LEU A 76 -1 N HIS A 75 O GLU A 62 SHEET 3 C 4 THR A 143 THR A 147 -1 N VAL A 146 O TRP A 72 SHEET 4 C 4 VAL A 136 ASP A 140 -1 N ASP A 140 O THR A 143 SHEET 1 D 2 VAL A 264 PRO A 268 0 SHEET 2 D 2 VAL A 486 LEU A 490 -1 N ARG A 489 O ARG A 265 SHEET 1 E 3 VAL A 411 CYS A 417 0 SHEET 2 E 3 CYS A 271 ILE A 277 -1 N GLU A 276 O ALA A 412 SHEET 3 E 3 ILE A 479 TYR A 484 -1 N TYR A 483 O TYR A 273 SHEET 1 F 2 THR A 360 ASN A 366 0 SHEET 2 F 2 ASN A 389 GLN A 395 1 N ASN A 389 O PHE A 361 SSBOND 1 CYS A 271 CYS A 417 1555 1555 2.04 CISPEP 1 ALA A 282 PRO A 283 0 3.43 SITE 1 AC1 7 ASP A 323 GLU A 393 ASN A 394 ACT A 529 SITE 2 AC1 7 HOH A 586 HOH A 627 HOH A 752 SITE 1 AC2 11 LYS A 372 IUM A 520 ACT A 530 HOH A 578 SITE 2 AC2 11 HOH A 591 HOH A 618 HOH A 623 HOH A 628 SITE 3 AC2 11 HOH A 643 HOH A 776 HOH A 814 SITE 1 AC3 8 PRO A 153 LYS A 372 ASP A 459 IUM A 519 SITE 2 AC3 8 ACT A 528 HOH A 623 HOH A 628 HOH A 637 SITE 1 AC4 7 VAL A 230 GLU A 251 ASP A 369 LYS A 373 SITE 2 AC4 7 HOH A 613 HOH A 694 HOH A 713 SITE 1 AC5 9 GLU A 53 LYS A 281 PHE A 361 ASP A 362 SITE 2 AC5 9 ASP A 410 LYS A 501 HOH A 688 HOH A 849 SITE 3 AC5 9 HOH A 964 SITE 1 AC6 5 ASP A 133 HIS A 517 HOH A 673 HOH A 782 SITE 2 AC6 5 HOH A 813 SITE 1 AC7 2 HOH A 718 HOH A 782 SITE 1 AC8 5 ASP A 11 GLU A 342 ACT A 531 HOH A 855 SITE 2 AC8 5 HOH A1077 SITE 1 AC9 5 TYR A 245 ASN A 247 ASN A 366 HIS A 371 SITE 2 AC9 5 LYS B 3 SITE 1 BC1 11 ASN A 247 TYR A 273 LYS A 307 ASP A 311 SITE 2 BC1 11 LEU A 370 TYR A 483 TYR A 485 VAL A 486 SITE 3 BC1 11 HOH A 556 HOH A 693 HOH A1078 SITE 1 BC2 7 ALA A 457 ARG A 462 IUM A 520 HOH A 637 SITE 2 BC2 7 HOH A 691 HOH A 701 HOH A 768 SITE 1 BC3 7 LYS A 157 ASP A 323 IUM A 518 HOH A 627 SITE 2 BC3 7 HOH A 642 HOH A 668 HOH A 728 SITE 1 BC4 8 TYR A 154 TYR A 156 IUM A 519 HOH A 590 SITE 2 BC4 8 HOH A 707 HOH A 776 HOH A 785 HOH A 814 SITE 1 BC5 4 ASP A 11 ALA A 349 IUM A 525 HOH A 845 CRYST1 109.190 76.040 70.280 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014229 0.00000