HEADER TRANSFERASE 19-JAN-07 2OLU TITLE STRUCTURAL INSIGHT INTO THE TRANSGLYCOSYLATION STEP OF BACTERIAL CELL TITLE 2 WALL BIOSYNTHESIS : APOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 60-727; COMPND 5 EC: 2.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: PBP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA LAMBDA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41A KEYWDS TRANSPEPTIDASE FOLD GLYCOSYLTRANSFERASE FAMILY 51, LYSOZYME FOLD, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LOVERING,L.H.DE CASTRO,D.LIM,N.C.STRYNADKA REVDAT 4 27-DEC-23 2OLU 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2OLU 1 VERSN REVDAT 2 24-FEB-09 2OLU 1 VERSN REVDAT 1 20-MAR-07 2OLU 0 JRNL AUTH A.L.LOVERING,L.H.DE CASTRO,D.LIM,N.C.STRYNADKA JRNL TITL STRUCTURAL INSIGHT INTO THE TRANSGLYCOSYLATION STEP OF JRNL TITL 2 BACTERIAL CELL-WALL BIOSYNTHESIS. JRNL REF SCIENCE V. 315 1402 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 17347437 JRNL DOI 10.1126/SCIENCE.1136611 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4777 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.344 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4884 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3256 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6603 ; 1.507 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7962 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 605 ; 7.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;41.094 ;25.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 823 ;19.472 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5543 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 960 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1001 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3003 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2363 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2456 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3856 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1240 ; 0.088 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4829 ; 0.841 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2230 ; 1.266 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1774 ; 1.992 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6751 86.0749 -10.0496 REMARK 3 T TENSOR REMARK 3 T11: -0.1594 T22: -0.1363 REMARK 3 T33: -0.0709 T12: -0.0567 REMARK 3 T13: -0.0350 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.2313 L22: 2.4100 REMARK 3 L33: 4.8165 L12: 0.1413 REMARK 3 L13: -0.5797 L23: 0.5417 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0057 S13: 0.0937 REMARK 3 S21: 0.0816 S22: -0.0897 S23: 0.0126 REMARK 3 S31: 0.1222 S32: -0.2104 S33: 0.1025 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 71 REMARK 3 RESIDUE RANGE : A 90 A 93 REMARK 3 RESIDUE RANGE : A 290 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1870 68.9329 -6.9504 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0008 REMARK 3 T33: 0.1465 T12: -0.0464 REMARK 3 T13: 0.0557 T23: 0.1127 REMARK 3 L TENSOR REMARK 3 L11: 6.3934 L22: 5.5155 REMARK 3 L33: 18.7353 L12: -0.4070 REMARK 3 L13: -7.1586 L23: 2.7679 REMARK 3 S TENSOR REMARK 3 S11: 0.4581 S12: 0.3519 S13: 0.3144 REMARK 3 S21: 0.3503 S22: 0.2551 S23: -0.8489 REMARK 3 S31: 1.3276 S32: -1.0384 S33: -0.7132 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 89 REMARK 3 RESIDUE RANGE : A 294 A 692 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9583 30.9409 -2.5520 REMARK 3 T TENSOR REMARK 3 T11: -0.1581 T22: -0.0673 REMARK 3 T33: -0.1369 T12: -0.0443 REMARK 3 T13: 0.0667 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 1.7400 L22: 1.9352 REMARK 3 L33: 1.6483 L12: -0.0473 REMARK 3 L13: 0.3229 L23: 0.4099 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: 0.2759 S13: -0.1205 REMARK 3 S21: -0.2405 S22: 0.0078 S23: -0.0642 REMARK 3 S31: -0.0963 S32: 0.1922 S33: -0.1090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : 0.13200 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 0.2M KCL, 4% PEG 8000, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.58200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.58200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.24750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 124.94550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.24750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 124.94550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.58200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.24750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 124.94550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.58200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.24750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 124.94550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 59 REMARK 465 LYS A 60 REMARK 465 ALA A 61 REMARK 465 PRO A 62 REMARK 465 ALA A 63 REMARK 465 PHE A 64 REMARK 465 THR A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 LYS A 127 REMARK 465 ARG A 128 REMARK 465 LEU A 129 REMARK 465 PHE A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 132 REMARK 465 ILE A 133 REMARK 465 GLY A 134 REMARK 465 LYS A 135 REMARK 465 ASN A 136 REMARK 465 LEU A 137 REMARK 465 THR A 138 REMARK 465 GLY A 139 REMARK 465 SER A 160 REMARK 465 GLN A 161 REMARK 465 HIS A 162 REMARK 465 LYS A 163 REMARK 465 GLY A 693 REMARK 465 GLY A 694 REMARK 465 SER A 695 REMARK 465 ASP A 696 REMARK 465 THR A 697 REMARK 465 SER A 698 REMARK 465 ALA A 699 REMARK 465 ASN A 700 REMARK 465 SER A 701 REMARK 465 SER A 702 REMARK 465 GLY A 703 REMARK 465 THR A 704 REMARK 465 ALA A 705 REMARK 465 GLN A 706 REMARK 465 SER A 707 REMARK 465 ASN A 708 REMARK 465 ASN A 709 REMARK 465 ASN A 710 REMARK 465 THR A 711 REMARK 465 ARG A 712 REMARK 465 SER A 713 REMARK 465 GLN A 714 REMARK 465 GLN A 715 REMARK 465 SER A 716 REMARK 465 ARG A 717 REMARK 465 ASN A 718 REMARK 465 SER A 719 REMARK 465 GLY A 720 REMARK 465 GLY A 721 REMARK 465 LEU A 722 REMARK 465 THR A 723 REMARK 465 GLY A 724 REMARK 465 ILE A 725 REMARK 465 PHE A 726 REMARK 465 ASN A 727 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 398 O HOH A 2 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 78.16 -107.21 REMARK 500 PRO A 72 108.85 -33.53 REMARK 500 LYS A 80 -15.98 -46.23 REMARK 500 VAL A 85 -58.81 -138.17 REMARK 500 LEU A 88 44.53 -75.89 REMARK 500 ASN A 90 -166.93 59.04 REMARK 500 ASP A 115 100.11 -165.83 REMARK 500 SER A 143 -60.06 -6.50 REMARK 500 ALA A 157 0.39 -66.82 REMARK 500 ILE A 165 -129.49 44.93 REMARK 500 SER A 198 161.96 68.55 REMARK 500 VAL A 233 86.55 -152.28 REMARK 500 ASP A 296 54.56 36.27 REMARK 500 LYS A 317 48.87 -67.22 REMARK 500 LEU A 325 5.51 -68.37 REMARK 500 ASP A 383 -81.73 -68.94 REMARK 500 ALA A 405 -74.06 -127.87 REMARK 500 ASN A 412 -62.02 -102.81 REMARK 500 ASP A 430 -103.99 56.18 REMARK 500 THR A 439 -3.36 72.92 REMARK 500 SER A 454 82.90 53.39 REMARK 500 SER A 499 -129.43 49.51 REMARK 500 GLU A 536 91.30 -50.93 REMARK 500 TYR A 567 -9.23 81.43 REMARK 500 TYR A 630 -5.25 62.56 REMARK 500 ASN A 633 55.31 -107.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 577 VAL A 578 -144.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 728 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OLV RELATED DB: PDB REMARK 900 STRUCTURAL INSIGHT INTO THE TRANSGLYCOSYLATION STEP OF BACTERIAL REMARK 900 CELL WALL BIOSYNTHESIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DIFFERENCE IS DUE TO DIFFERENCE IN THE STRAIN DBREF 2OLU A 60 727 UNP Q2YY56 Q2YY56_STAAB 60 727 SEQADV 2OLU MSE A 59 UNP Q2YY56 INITIATING METHIONINE SEQADV 2OLU MSE A 106 UNP Q2YY56 MET 106 MODIFIED RESIDUE SEQADV 2OLU MSE A 257 UNP Q2YY56 MET 257 MODIFIED RESIDUE SEQADV 2OLU PRO A 285 UNP Q2YY56 ALA 285 SEE REMARK 999 SEQADV 2OLU MSE A 311 UNP Q2YY56 MET 311 MODIFIED RESIDUE SEQADV 2OLU MSE A 335 UNP Q2YY56 MET 335 MODIFIED RESIDUE SEQADV 2OLU MSE A 413 UNP Q2YY56 MET 413 MODIFIED RESIDUE SEQADV 2OLU THR A 439 UNP Q2YY56 VAL 439 SEE REMARK 999 SEQADV 2OLU MSE A 548 UNP Q2YY56 MET 548 MODIFIED RESIDUE SEQADV 2OLU MSE A 555 UNP Q2YY56 MET 555 MODIFIED RESIDUE SEQADV 2OLU MSE A 559 UNP Q2YY56 MET 559 MODIFIED RESIDUE SEQADV 2OLU MSE A 580 UNP Q2YY56 MET 580 MODIFIED RESIDUE SEQADV 2OLU MSE A 618 UNP Q2YY56 MET 618 MODIFIED RESIDUE SEQADV 2OLU MSE A 622 UNP Q2YY56 MET 622 MODIFIED RESIDUE SEQADV 2OLU MSE A 652 UNP Q2YY56 MET 652 MODIFIED RESIDUE SEQRES 1 A 669 MSE LYS ALA PRO ALA PHE THR GLU ALA LYS LEU GLN ASP SEQRES 2 A 669 PRO ILE PRO ALA LYS ILE TYR ASP LYS ASN GLY GLU LEU SEQRES 3 A 669 VAL LYS THR LEU ASP ASN GLY GLN ARG HIS GLU HIS VAL SEQRES 4 A 669 ASN LEU LYS ASP VAL PRO LYS SER MSE LYS ASP ALA VAL SEQRES 5 A 669 LEU ALA THR GLU ASP ASN ARG PHE TYR GLU HIS GLY ALA SEQRES 6 A 669 LEU ASP TYR LYS ARG LEU PHE GLY ALA ILE GLY LYS ASN SEQRES 7 A 669 LEU THR GLY GLY PHE GLY SER GLU GLY ALA SER THR LEU SEQRES 8 A 669 THR GLN GLN VAL VAL LYS ASP ALA PHE LEU SER GLN HIS SEQRES 9 A 669 LYS SER ILE GLY ARG LYS ALA GLN GLU ALA TYR LEU SER SEQRES 10 A 669 TYR ARG LEU GLU GLN GLU TYR SER LYS ASP ASP ILE PHE SEQRES 11 A 669 GLN VAL TYR LEU ASN LYS ILE TYR TYR SER ASP GLY VAL SEQRES 12 A 669 THR GLY ILE LYS ALA ALA ALA LYS TYR TYR PHE ASN LYS SEQRES 13 A 669 ASP LEU LYS ASP LEU ASN LEU ALA GLU GLU ALA TYR LEU SEQRES 14 A 669 ALA GLY LEU PRO GLN VAL PRO ASN ASN TYR ASN ILE TYR SEQRES 15 A 669 ASP HIS PRO LYS ALA ALA GLU ASP ARG LYS ASN THR VAL SEQRES 16 A 669 LEU TYR LEU MSE HIS TYR HIS LYS ARG ILE THR ASP LYS SEQRES 17 A 669 GLN TRP GLU ASP ALA LYS LYS ILE ASP LEU LYS ALA ASN SEQRES 18 A 669 LEU VAL ASN ARG THR PRO GLU GLU ARG GLN ASN ILE ASP SEQRES 19 A 669 THR ASN GLN ASP SER GLU TYR ASN SER TYR VAL ASN PHE SEQRES 20 A 669 VAL LYS SER GLU LEU MSE ASN ASN LYS ALA PHE LYS ASP SEQRES 21 A 669 GLU ASN LEU GLY ASN VAL LEU GLN SER GLY ILE LYS ILE SEQRES 22 A 669 TYR THR ASN MSE ASP LYS ASP VAL GLN LYS THR LEU GLN SEQRES 23 A 669 ASN ASP VAL ASP ASN GLY SER PHE TYR LYS ASN LYS ASP SEQRES 24 A 669 GLN GLN VAL GLY ALA THR ILE LEU ASP SER LYS THR GLY SEQRES 25 A 669 GLY LEU VAL ALA ILE SER GLY GLY ARG ASP PHE LYS ASP SEQRES 26 A 669 VAL VAL ASN ARG ASN GLN ALA THR ASP PRO HIS PRO THR SEQRES 27 A 669 GLY SER SER LEU LYS PRO PHE LEU ALA TYR GLY PRO ALA SEQRES 28 A 669 ILE GLU ASN MSE LYS TRP ALA THR ASN HIS ALA ILE GLN SEQRES 29 A 669 ASP GLU SER SER TYR GLN VAL ASP GLY SER THR PHE ARG SEQRES 30 A 669 ASN TYR ASP THR LYS SER HIS GLY THR VAL SER ILE TYR SEQRES 31 A 669 ASP ALA LEU ARG GLN SER PHE ASN ILE PRO ALA LEU LYS SEQRES 32 A 669 ALA TRP GLN SER VAL LYS GLN ASN ALA GLY ASN ASP ALA SEQRES 33 A 669 PRO LYS LYS PHE ALA ALA LYS LEU GLY LEU ASN TYR GLU SEQRES 34 A 669 GLY ASP ILE GLY PRO SER GLU VAL LEU GLY GLY SER ALA SEQRES 35 A 669 SER GLU PHE SER PRO THR GLN LEU ALA SER ALA PHE ALA SEQRES 36 A 669 ALA ILE ALA ASN GLY GLY THR TYR ASN ASN ALA HIS SER SEQRES 37 A 669 ILE GLN LYS VAL VAL THR ARG ASP GLY GLU THR ILE GLU SEQRES 38 A 669 TYR ASP HIS THR SER HIS LYS ALA MSE SER ASP TYR THR SEQRES 39 A 669 ALA TYR MSE LEU ALA GLU MSE LEU LYS GLY THR PHE LYS SEQRES 40 A 669 PRO TYR GLY SER ALA TYR GLY HIS GLY VAL SER GLY VAL SEQRES 41 A 669 ASN MSE GLY ALA LYS THR GLY THR GLY THR TYR GLY ALA SEQRES 42 A 669 GLU THR TYR SER GLN TYR ASN LEU PRO ASP ASN ALA ALA SEQRES 43 A 669 LYS ASP VAL TRP ILE ASN GLY PHE THR PRO GLN TYR THR SEQRES 44 A 669 MSE SER VAL TRP MSE GLY PHE SER LYS VAL LYS GLN TYR SEQRES 45 A 669 GLY GLU ASN SER PHE VAL GLY HIS SER GLN GLN GLU TYR SEQRES 46 A 669 PRO GLN PHE LEU TYR GLU ASN VAL MSE SER LYS ILE SER SEQRES 47 A 669 SER ARG ASP GLY GLU ASP PHE LYS ARG PRO SER SER VAL SEQRES 48 A 669 SER GLY SER ILE PRO SER ILE ASN VAL SER GLY SER GLN SEQRES 49 A 669 ASP ASN ASN THR THR ASN ARG SER THR HIS GLY GLY SER SEQRES 50 A 669 ASP THR SER ALA ASN SER SER GLY THR ALA GLN SER ASN SEQRES 51 A 669 ASN ASN THR ARG SER GLN GLN SER ARG ASN SER GLY GLY SEQRES 52 A 669 LEU THR GLY ILE PHE ASN MODRES 2OLU MSE A 106 MET SELENOMETHIONINE MODRES 2OLU MSE A 257 MET SELENOMETHIONINE MODRES 2OLU MSE A 311 MET SELENOMETHIONINE MODRES 2OLU MSE A 335 MET SELENOMETHIONINE MODRES 2OLU MSE A 413 MET SELENOMETHIONINE MODRES 2OLU MSE A 548 MET SELENOMETHIONINE MODRES 2OLU MSE A 555 MET SELENOMETHIONINE MODRES 2OLU MSE A 559 MET SELENOMETHIONINE MODRES 2OLU MSE A 580 MET SELENOMETHIONINE MODRES 2OLU MSE A 618 MET SELENOMETHIONINE MODRES 2OLU MSE A 622 MET SELENOMETHIONINE MODRES 2OLU MSE A 652 MET SELENOMETHIONINE HET MSE A 106 8 HET MSE A 257 8 HET MSE A 311 8 HET MSE A 335 8 HET MSE A 413 8 HET MSE A 548 8 HET MSE A 555 8 HET MSE A 559 8 HET MSE A 580 8 HET MSE A 618 8 HET MSE A 622 8 HET MSE A 652 8 HET EDO A 728 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *22(H2 O) HELIX 1 1 ASN A 98 VAL A 102 5 5 HELIX 2 2 PRO A 103 ASP A 115 1 13 HELIX 3 3 GLY A 122 TYR A 126 5 5 HELIX 4 4 SER A 147 ALA A 157 1 11 HELIX 5 5 LYS A 168 TYR A 182 1 15 HELIX 6 6 SER A 183 ILE A 195 1 13 HELIX 7 7 GLY A 203 ASN A 213 1 11 HELIX 8 8 ASP A 215 LEU A 219 5 5 HELIX 9 9 ASN A 220 LEU A 230 1 11 HELIX 10 10 PRO A 231 VAL A 233 5 3 HELIX 11 11 HIS A 242 HIS A 260 1 19 HELIX 12 12 THR A 264 LYS A 273 1 10 HELIX 13 13 ASP A 275 LEU A 280 5 6 HELIX 14 14 THR A 284 ASN A 290 1 7 HELIX 15 15 ASP A 296 GLU A 298 5 3 HELIX 16 16 TYR A 299 MSE A 311 1 13 HELIX 17 17 ASN A 320 LEU A 325 1 6 HELIX 18 18 ASP A 336 GLY A 350 1 15 HELIX 19 19 GLY A 397 SER A 399 5 3 HELIX 20 20 LEU A 400 ALA A 405 1 6 HELIX 21 21 ALA A 405 MSE A 413 1 9 HELIX 22 22 ILE A 447 GLN A 453 1 7 HELIX 23 23 PHE A 455 ALA A 470 1 16 HELIX 24 24 ASP A 473 LEU A 482 1 10 HELIX 25 25 GLY A 491 LEU A 496 1 6 HELIX 26 26 SER A 504 ASN A 517 1 14 HELIX 27 27 SER A 549 GLY A 562 1 14 HELIX 28 28 THR A 563 LYS A 565 5 3 HELIX 29 29 GLY A 590 TYR A 597 1 8 HELIX 30 30 LYS A 628 GLU A 632 5 5 HELIX 31 31 GLY A 637 GLU A 642 1 6 HELIX 32 32 GLU A 642 SER A 656 1 15 SHEET 1 A 5 LEU A 84 THR A 87 0 SHEET 2 A 5 LYS A 76 TYR A 78 -1 N ILE A 77 O LYS A 86 SHEET 3 A 5 LYS A 330 THR A 333 1 O ILE A 331 N TYR A 78 SHEET 4 A 5 ILE A 527 VAL A 531 -1 O LYS A 529 N TYR A 332 SHEET 5 A 5 THR A 537 GLU A 539 -1 O ILE A 538 N VAL A 530 SHEET 1 B 5 LEU A 372 SER A 376 0 SHEET 2 B 5 GLN A 358 ASP A 366 -1 N ILE A 364 O ALA A 374 SHEET 3 B 5 TYR A 616 PHE A 624 -1 O GLY A 623 N GLN A 359 SHEET 4 B 5 ASP A 606 PHE A 612 -1 N ILE A 609 O VAL A 620 SHEET 5 B 5 GLY A 581 GLY A 587 -1 N LYS A 583 O ASN A 610 SHEET 1 C 2 HIS A 394 PRO A 395 0 SHEET 2 C 2 GLU A 502 PHE A 503 -1 O PHE A 503 N HIS A 394 SHEET 1 D 2 ALA A 420 GLN A 422 0 SHEET 2 D 2 THR A 444 SER A 446 -1 O VAL A 445 N ILE A 421 SHEET 1 E 2 TYR A 427 VAL A 429 0 SHEET 2 E 2 SER A 432 PHE A 434 -1 O PHE A 434 N TYR A 427 SHEET 1 F 2 THR A 520 ASN A 522 0 SHEET 2 F 2 SER A 544 LYS A 546 -1 O HIS A 545 N TYR A 521 SHEET 1 G 2 ALA A 603 ALA A 604 0 SHEET 2 G 2 PHE A 635 VAL A 636 -1 O PHE A 635 N ALA A 604 SHEET 1 H 2 VAL A 669 SER A 670 0 SHEET 2 H 2 ASN A 677 VAL A 678 -1 O ASN A 677 N SER A 670 LINK C SER A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N LYS A 107 1555 1555 1.33 LINK C LEU A 256 N MSE A 257 1555 1555 1.32 LINK C MSE A 257 N HIS A 258 1555 1555 1.32 LINK C LEU A 310 N MSE A 311 1555 1555 1.33 LINK C MSE A 311 N ASN A 312 1555 1555 1.34 LINK C ASN A 334 N MSE A 335 1555 1555 1.33 LINK C MSE A 335 N ASP A 336 1555 1555 1.33 LINK C ASN A 412 N MSE A 413 1555 1555 1.33 LINK C MSE A 413 N LYS A 414 1555 1555 1.33 LINK C ALA A 547 N MSE A 548 1555 1555 1.34 LINK C MSE A 548 N SER A 549 1555 1555 1.33 LINK C TYR A 554 N MSE A 555 1555 1555 1.33 LINK C MSE A 555 N LEU A 556 1555 1555 1.33 LINK C GLU A 558 N MSE A 559 1555 1555 1.34 LINK C MSE A 559 N LEU A 560 1555 1555 1.33 LINK C ASN A 579 N MSE A 580 1555 1555 1.33 LINK C MSE A 580 N GLY A 581 1555 1555 1.32 LINK C THR A 617 N MSE A 618 1555 1555 1.33 LINK C MSE A 618 N SER A 619 1555 1555 1.34 LINK C TRP A 621 N MSE A 622 1555 1555 1.33 LINK C MSE A 622 N GLY A 623 1555 1555 1.34 LINK C VAL A 651 N MSE A 652 1555 1555 1.33 LINK C MSE A 652 N SER A 653 1555 1555 1.33 CISPEP 1 ILE A 673 PRO A 674 0 -4.21 SITE 1 AC1 4 HIS A 242 LYS A 244 ALA A 245 ASP A 659 CRYST1 70.495 249.891 103.164 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009693 0.00000