data_2OM3 # _entry.id 2OM3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OM3 pdb_00002om3 10.2210/pdb2om3/pdb RCSB RCSB041305 ? ? WWPDB D_1000041305 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' Other 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_single_particle_entity 2 3 'Structure model' em_software 3 4 'Structure model' atom_sites 4 4 'Structure model' cell 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' em_3d_fitting_list 9 5 'Structure model' pdbx_initial_refinement_model 10 5 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 4 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 3 4 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 4 4 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 5 4 'Structure model' '_cell.length_a' 6 4 'Structure model' '_cell.length_b' 7 4 'Structure model' '_cell.length_c' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_em_3d_fitting_list.accession_code' 11 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 12 5 'Structure model' '_em_3d_fitting_list.source_name' 13 5 'Structure model' '_em_3d_fitting_list.type' 14 5 'Structure model' '_pdbx_struct_oper_list.name' 15 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 16 5 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OM3 _pdbx_database_status.recvd_initial_deposition_date 2007-01-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2tmv 'The same protein/RNA complex resolved by X-ray fiber diffraction' unspecified PDB 1ei7 'Structure of the RNA-free disk protein resolved by X-ray crystallography' unspecified EMDB EMD-1316 . 'associated EM volume' # _audit_author.name 'Sachse, C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'High-resolution electron microscopy of helical specimens: a fresh look at tobacco mosaic virus.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 371 _citation.page_first 812 _citation.page_last 835 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17585939 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.05.088 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sachse, C.' 1 ? primary 'Chen, J.Z.' 2 ? primary 'Coureux, P.D.' 3 ? primary 'Stroupe, M.E.' 4 ? primary 'Fandrich, M.' 5 ? primary 'Grigorieff, N.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Tobacco Mosaic Virus RNA' 958.660 1 ? ? ? ? 2 polymer nat 'Coat protein' 17505.426 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Capsid protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAA GAA R ? 2 'polypeptide(L)' no no ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 2 1 SER n 2 2 TYR n 2 3 SER n 2 4 ILE n 2 5 THR n 2 6 THR n 2 7 PRO n 2 8 SER n 2 9 GLN n 2 10 PHE n 2 11 VAL n 2 12 PHE n 2 13 LEU n 2 14 SER n 2 15 SER n 2 16 ALA n 2 17 TRP n 2 18 ALA n 2 19 ASP n 2 20 PRO n 2 21 ILE n 2 22 GLU n 2 23 LEU n 2 24 ILE n 2 25 ASN n 2 26 LEU n 2 27 CYS n 2 28 THR n 2 29 ASN n 2 30 ALA n 2 31 LEU n 2 32 GLY n 2 33 ASN n 2 34 GLN n 2 35 PHE n 2 36 GLN n 2 37 THR n 2 38 GLN n 2 39 GLN n 2 40 ALA n 2 41 ARG n 2 42 THR n 2 43 VAL n 2 44 VAL n 2 45 GLN n 2 46 ARG n 2 47 GLN n 2 48 PHE n 2 49 SER n 2 50 GLU n 2 51 VAL n 2 52 TRP n 2 53 LYS n 2 54 PRO n 2 55 SER n 2 56 PRO n 2 57 GLN n 2 58 VAL n 2 59 THR n 2 60 VAL n 2 61 ARG n 2 62 PHE n 2 63 PRO n 2 64 ASP n 2 65 SER n 2 66 ASP n 2 67 PHE n 2 68 LYS n 2 69 VAL n 2 70 TYR n 2 71 ARG n 2 72 TYR n 2 73 ASN n 2 74 ALA n 2 75 VAL n 2 76 LEU n 2 77 ASP n 2 78 PRO n 2 79 LEU n 2 80 VAL n 2 81 THR n 2 82 ALA n 2 83 LEU n 2 84 LEU n 2 85 GLY n 2 86 ALA n 2 87 PHE n 2 88 ASP n 2 89 THR n 2 90 ARG n 2 91 ASN n 2 92 ARG n 2 93 ILE n 2 94 ILE n 2 95 GLU n 2 96 VAL n 2 97 GLU n 2 98 ASN n 2 99 GLN n 2 100 ALA n 2 101 ASN n 2 102 PRO n 2 103 THR n 2 104 THR n 2 105 ALA n 2 106 GLU n 2 107 THR n 2 108 LEU n 2 109 ASP n 2 110 ALA n 2 111 THR n 2 112 ARG n 2 113 ARG n 2 114 VAL n 2 115 ASP n 2 116 ASP n 2 117 ALA n 2 118 THR n 2 119 VAL n 2 120 ALA n 2 121 ILE n 2 122 ARG n 2 123 SER n 2 124 ALA n 2 125 ILE n 2 126 ASN n 2 127 ASN n 2 128 LEU n 2 129 ILE n 2 130 VAL n 2 131 GLU n 2 132 LEU n 2 133 ILE n 2 134 ARG n 2 135 GLY n 2 136 THR n 2 137 GLY n 2 138 SER n 2 139 TYR n 2 140 ASN n 2 141 ARG n 2 142 SER n 2 143 SER n 2 144 PHE n 2 145 GLU n 2 146 SER n 2 147 SER n 2 148 SER n 2 149 GLY n 2 150 LEU n 2 151 VAL n 2 152 TRP n 2 153 THR n 2 154 SER n 2 155 GLY n 2 156 PRO n 2 157 ALA n 2 158 THR n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Tobacco mosaic virus' _entity_src_nat.pdbx_ncbi_taxonomy_id 12242 _entity_src_nat.genus Tobamovirus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 4 4 G G R . n A 1 2 A 2 5 5 A A R . n A 1 3 A 3 6 6 A A R . n B 2 1 SER 1 1 1 SER SER A . n B 2 2 TYR 2 2 2 TYR TYR A . n B 2 3 SER 3 3 3 SER SER A . n B 2 4 ILE 4 4 4 ILE ILE A . n B 2 5 THR 5 5 5 THR THR A . n B 2 6 THR 6 6 6 THR THR A . n B 2 7 PRO 7 7 7 PRO PRO A . n B 2 8 SER 8 8 8 SER SER A . n B 2 9 GLN 9 9 9 GLN GLN A . n B 2 10 PHE 10 10 10 PHE PHE A . n B 2 11 VAL 11 11 11 VAL VAL A . n B 2 12 PHE 12 12 12 PHE PHE A . n B 2 13 LEU 13 13 13 LEU LEU A . n B 2 14 SER 14 14 14 SER SER A . n B 2 15 SER 15 15 15 SER SER A . n B 2 16 ALA 16 16 16 ALA ALA A . n B 2 17 TRP 17 17 17 TRP TRP A . n B 2 18 ALA 18 18 18 ALA ALA A . n B 2 19 ASP 19 19 19 ASP ASP A . n B 2 20 PRO 20 20 20 PRO PRO A . n B 2 21 ILE 21 21 21 ILE ILE A . n B 2 22 GLU 22 22 22 GLU GLU A . n B 2 23 LEU 23 23 23 LEU LEU A . n B 2 24 ILE 24 24 24 ILE ILE A . n B 2 25 ASN 25 25 25 ASN ASN A . n B 2 26 LEU 26 26 26 LEU LEU A . n B 2 27 CYS 27 27 27 CYS CYS A . n B 2 28 THR 28 28 28 THR THR A . n B 2 29 ASN 29 29 29 ASN ASN A . n B 2 30 ALA 30 30 30 ALA ALA A . n B 2 31 LEU 31 31 31 LEU LEU A . n B 2 32 GLY 32 32 32 GLY GLY A . n B 2 33 ASN 33 33 33 ASN ASN A . n B 2 34 GLN 34 34 34 GLN GLN A . n B 2 35 PHE 35 35 35 PHE PHE A . n B 2 36 GLN 36 36 36 GLN GLN A . n B 2 37 THR 37 37 37 THR THR A . n B 2 38 GLN 38 38 38 GLN GLN A . n B 2 39 GLN 39 39 39 GLN GLN A . n B 2 40 ALA 40 40 40 ALA ALA A . n B 2 41 ARG 41 41 41 ARG ARG A . n B 2 42 THR 42 42 42 THR THR A . n B 2 43 VAL 43 43 43 VAL VAL A . n B 2 44 VAL 44 44 44 VAL VAL A . n B 2 45 GLN 45 45 45 GLN GLN A . n B 2 46 ARG 46 46 46 ARG ARG A . n B 2 47 GLN 47 47 47 GLN GLN A . n B 2 48 PHE 48 48 48 PHE PHE A . n B 2 49 SER 49 49 49 SER SER A . n B 2 50 GLU 50 50 50 GLU GLU A . n B 2 51 VAL 51 51 51 VAL VAL A . n B 2 52 TRP 52 52 52 TRP TRP A . n B 2 53 LYS 53 53 53 LYS LYS A . n B 2 54 PRO 54 54 54 PRO PRO A . n B 2 55 SER 55 55 55 SER SER A . n B 2 56 PRO 56 56 56 PRO PRO A . n B 2 57 GLN 57 57 57 GLN GLN A . n B 2 58 VAL 58 58 58 VAL VAL A . n B 2 59 THR 59 59 59 THR THR A . n B 2 60 VAL 60 60 60 VAL VAL A . n B 2 61 ARG 61 61 61 ARG ARG A . n B 2 62 PHE 62 62 62 PHE PHE A . n B 2 63 PRO 63 63 63 PRO PRO A . n B 2 64 ASP 64 64 64 ASP ASP A . n B 2 65 SER 65 65 65 SER SER A . n B 2 66 ASP 66 66 66 ASP ASP A . n B 2 67 PHE 67 67 67 PHE PHE A . n B 2 68 LYS 68 68 68 LYS LYS A . n B 2 69 VAL 69 69 69 VAL VAL A . n B 2 70 TYR 70 70 70 TYR TYR A . n B 2 71 ARG 71 71 71 ARG ARG A . n B 2 72 TYR 72 72 72 TYR TYR A . n B 2 73 ASN 73 73 73 ASN ASN A . n B 2 74 ALA 74 74 74 ALA ALA A . n B 2 75 VAL 75 75 75 VAL VAL A . n B 2 76 LEU 76 76 76 LEU LEU A . n B 2 77 ASP 77 77 77 ASP ASP A . n B 2 78 PRO 78 78 78 PRO PRO A . n B 2 79 LEU 79 79 79 LEU LEU A . n B 2 80 VAL 80 80 80 VAL VAL A . n B 2 81 THR 81 81 81 THR THR A . n B 2 82 ALA 82 82 82 ALA ALA A . n B 2 83 LEU 83 83 83 LEU LEU A . n B 2 84 LEU 84 84 84 LEU LEU A . n B 2 85 GLY 85 85 85 GLY GLY A . n B 2 86 ALA 86 86 86 ALA ALA A . n B 2 87 PHE 87 87 87 PHE PHE A . n B 2 88 ASP 88 88 88 ASP ASP A . n B 2 89 THR 89 89 89 THR THR A . n B 2 90 ARG 90 90 90 ARG ARG A . n B 2 91 ASN 91 91 91 ASN ASN A . n B 2 92 ARG 92 92 92 ARG ARG A . n B 2 93 ILE 93 93 93 ILE ILE A . n B 2 94 ILE 94 94 94 ILE ILE A . n B 2 95 GLU 95 95 95 GLU GLU A . n B 2 96 VAL 96 96 96 VAL VAL A . n B 2 97 GLU 97 97 97 GLU GLU A . n B 2 98 ASN 98 98 98 ASN ASN A . n B 2 99 GLN 99 99 99 GLN GLN A . n B 2 100 ALA 100 100 100 ALA ALA A . n B 2 101 ASN 101 101 101 ASN ASN A . n B 2 102 PRO 102 102 102 PRO PRO A . n B 2 103 THR 103 103 103 THR THR A . n B 2 104 THR 104 104 104 THR THR A . n B 2 105 ALA 105 105 105 ALA ALA A . n B 2 106 GLU 106 106 106 GLU GLU A . n B 2 107 THR 107 107 107 THR THR A . n B 2 108 LEU 108 108 108 LEU LEU A . n B 2 109 ASP 109 109 109 ASP ASP A . n B 2 110 ALA 110 110 110 ALA ALA A . n B 2 111 THR 111 111 111 THR THR A . n B 2 112 ARG 112 112 112 ARG ARG A . n B 2 113 ARG 113 113 113 ARG ARG A . n B 2 114 VAL 114 114 114 VAL VAL A . n B 2 115 ASP 115 115 115 ASP ASP A . n B 2 116 ASP 116 116 116 ASP ASP A . n B 2 117 ALA 117 117 117 ALA ALA A . n B 2 118 THR 118 118 118 THR THR A . n B 2 119 VAL 119 119 119 VAL VAL A . n B 2 120 ALA 120 120 120 ALA ALA A . n B 2 121 ILE 121 121 121 ILE ILE A . n B 2 122 ARG 122 122 122 ARG ARG A . n B 2 123 SER 123 123 123 SER SER A . n B 2 124 ALA 124 124 124 ALA ALA A . n B 2 125 ILE 125 125 125 ILE ILE A . n B 2 126 ASN 126 126 126 ASN ASN A . n B 2 127 ASN 127 127 127 ASN ASN A . n B 2 128 LEU 128 128 128 LEU LEU A . n B 2 129 ILE 129 129 129 ILE ILE A . n B 2 130 VAL 130 130 130 VAL VAL A . n B 2 131 GLU 131 131 131 GLU GLU A . n B 2 132 LEU 132 132 132 LEU LEU A . n B 2 133 ILE 133 133 133 ILE ILE A . n B 2 134 ARG 134 134 134 ARG ARG A . n B 2 135 GLY 135 135 135 GLY GLY A . n B 2 136 THR 136 136 136 THR THR A . n B 2 137 GLY 137 137 137 GLY GLY A . n B 2 138 SER 138 138 138 SER SER A . n B 2 139 TYR 139 139 139 TYR TYR A . n B 2 140 ASN 140 140 140 ASN ASN A . n B 2 141 ARG 141 141 141 ARG ARG A . n B 2 142 SER 142 142 142 SER SER A . n B 2 143 SER 143 143 143 SER SER A . n B 2 144 PHE 144 144 144 PHE PHE A . n B 2 145 GLU 145 145 145 GLU GLU A . n B 2 146 SER 146 146 146 SER SER A . n B 2 147 SER 147 147 147 SER SER A . n B 2 148 SER 148 148 148 SER SER A . n B 2 149 GLY 149 149 149 GLY GLY A . n B 2 150 LEU 150 150 150 LEU LEU A . n B 2 151 VAL 151 151 151 VAL VAL A . n B 2 152 TRP 152 152 152 TRP TRP A . n B 2 153 THR 153 153 153 THR THR A . n B 2 154 SER 154 154 154 SER SER A . n B 2 155 GLY 155 155 ? ? ? A . n B 2 156 PRO 156 156 ? ? ? A . n B 2 157 ALA 157 157 ? ? ? A . n B 2 158 THR 158 158 ? ? ? A . n # _cell.entry_id 2OM3 _cell.length_a 1.0 _cell.length_b 1.0 _cell.length_c 1.0 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OM3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2OM3 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1212 _refine_hist.pdbx_number_atoms_nucleic_acid 67 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1279 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 2OM3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OM3 _struct.title 'High-resolution cryo-EM structure of Tobacco Mosaic Virus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OM3 _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'protein-RNA complex, four-helical up-and-down bundle, HELICAL VIRUS, VIRUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q77LT8_9VIRU Q77LT8 2 ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; 2 ? 2 PDB 2OM3 2OM3 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OM3 A 1 ? 158 ? Q77LT8 2 ? 159 ? 1 158 2 2 2OM3 R 1 ? 3 ? 2OM3 4 ? 6 ? 4 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 98-meric 98 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-49)' A,B 2 25 A,B 3 H A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.98083020 0.19486436 0.00000000 0.00000 -0.19486436 -0.98083020 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -33.78240 2 'helical symmetry operation' ? ? -0.83610812 0.54856469 0.00000000 0.00000 -0.54856469 -0.83610812 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.37480 3 'helical symmetry operation' ? ? -0.56927378 0.82214802 0.00000000 0.00000 -0.82214802 -0.56927378 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.96720 4 'helical symmetry operation' ? ? -0.21929792 0.97565794 0.00000000 0.00000 -0.97565794 -0.21929792 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -29.55960 5 'helical symmetry operation' ? ? 0.16270605 0.98667459 0.00000000 0.00000 -0.98667459 0.16270605 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.15200 6 'helical symmetry operation' ? ? 0.52094706 0.85358899 0.00000000 0.00000 -0.85358899 0.52094706 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -26.74440 7 'helical symmetry operation' ? ? 0.80310459 0.59583808 0.00000000 0.00000 -0.59583808 0.80310459 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.33680 8 'helical symmetry operation' ? ? 0.96796998 0.25106597 0.00000000 0.00000 -0.25106597 0.96796998 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.92920 9 'helical symmetry operation' ? ? 0.99146490 -0.13037392 0.00000000 0.00000 0.13037392 0.99146490 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.52160 10 'helical symmetry operation' ? ? 0.87015795 -0.49277290 0.00000000 0.00000 0.49277290 0.87015795 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.11400 11 'helical symmetry operation' ? ? 0.62176583 -0.78320320 0.00000000 0.00000 0.78320320 0.62176583 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.70640 12 'helical symmetry operation' ? ? 0.28256581 -0.95924792 0.00000000 0.00000 0.95924792 0.28256581 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.29880 13 'helical symmetry operation' ? ? -0.09790250 -0.99519601 0.00000000 0.00000 0.99519601 -0.09790250 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.89120 14 'helical symmetry operation' ? ? -0.46407231 -0.88579732 0.00000000 0.00000 0.88579732 -0.46407231 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.48360 15 'helical symmetry operation' ? ? -0.76246510 -0.64702935 0.00000000 0.00000 0.64702935 -0.76246510 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.07600 16 'helical symmetry operation' ? ? -0.94950108 -0.31376377 0.00000000 0.00000 0.31376377 -0.94950108 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.66840 17 'helical symmetry operation' ? ? -0.99786394 0.06532650 0.00000000 0.00000 -0.06532650 -0.99786394 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.26080 18 'helical symmetry operation' ? ? -0.90049038 0.43487594 0.00000000 0.00000 -0.43487594 -0.90049038 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.85320 19 'helical symmetry operation' ? ? -0.67160163 0.74091245 0.00000000 0.00000 -0.74091245 -0.67160163 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.44560 20 'helical symmetry operation' ? ? -0.34462654 0.93873987 0.00000000 0.00000 -0.93873987 -0.34462654 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.03800 21 'helical symmetry operation' ? ? 0.03268071 0.99946584 0.00000000 0.00000 -0.99946584 0.03268071 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.63040 22 'helical symmetry operation' ? ? 0.40521499 0.91422143 0.00000000 0.00000 -0.91422143 0.40521499 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.22280 23 'helical symmetry operation' ? ? 0.71856827 0.69545643 0.00000000 0.00000 -0.69545643 0.71856827 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.81520 24 'helical symmetry operation' ? ? 0.92697580 0.37512114 0.00000000 0.00000 -0.37512114 0.92697580 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.40760 25 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 26 'helical symmetry operation' ? ? 0.92697580 -0.37512114 0.00000000 0.00000 0.37512114 0.92697580 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.40760 27 'helical symmetry operation' ? ? 0.71856827 -0.69545643 0.00000000 0.00000 0.69545643 0.71856827 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.81520 28 'helical symmetry operation' ? ? 0.40521499 -0.91422143 0.00000000 0.00000 0.91422143 0.40521499 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.22280 29 'helical symmetry operation' ? ? 0.03268071 -0.99946584 0.00000000 0.00000 0.99946584 0.03268071 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.63040 30 'helical symmetry operation' ? ? -0.34462654 -0.93873987 0.00000000 0.00000 0.93873987 -0.34462654 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.03800 31 'helical symmetry operation' ? ? -0.67160163 -0.74091245 0.00000000 0.00000 0.74091245 -0.67160163 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.44560 32 'helical symmetry operation' ? ? -0.90049038 -0.43487594 0.00000000 0.00000 0.43487594 -0.90049038 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.85320 33 'helical symmetry operation' ? ? -0.99786394 -0.06532650 0.00000000 0.00000 0.06532650 -0.99786394 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.26080 34 'helical symmetry operation' ? ? -0.94950108 0.31376377 0.00000000 0.00000 -0.31376377 -0.94950108 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.66840 35 'helical symmetry operation' ? ? -0.76246510 0.64702935 0.00000000 0.00000 -0.64702935 -0.76246510 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.07600 36 'helical symmetry operation' ? ? -0.46407231 0.88579732 0.00000000 0.00000 -0.88579732 -0.46407231 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.48360 37 'helical symmetry operation' ? ? -0.09790250 0.99519601 0.00000000 0.00000 -0.99519601 -0.09790250 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.89120 38 'helical symmetry operation' ? ? 0.28256581 0.95924792 0.00000000 0.00000 -0.95924792 0.28256581 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.29880 39 'helical symmetry operation' ? ? 0.62176583 0.78320320 0.00000000 0.00000 -0.78320320 0.62176583 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.70640 40 'helical symmetry operation' ? ? 0.87015795 0.49277290 0.00000000 0.00000 -0.49277290 0.87015795 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.11400 41 'helical symmetry operation' ? ? 0.99146490 0.13037392 0.00000000 0.00000 -0.13037392 0.99146490 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.52160 42 'helical symmetry operation' ? ? 0.96796998 -0.25106597 0.00000000 0.00000 0.25106597 0.96796998 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.92920 43 'helical symmetry operation' ? ? 0.80310459 -0.59583808 0.00000000 0.00000 0.59583808 0.80310459 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.33680 44 'helical symmetry operation' ? ? 0.52094706 -0.85358899 0.00000000 0.00000 0.85358899 0.52094706 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 26.74440 45 'helical symmetry operation' ? ? 0.16270605 -0.98667459 0.00000000 0.00000 0.98667459 0.16270605 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.15200 46 'helical symmetry operation' ? ? -0.21929792 -0.97565794 0.00000000 0.00000 0.97565794 -0.21929792 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 29.55960 47 'helical symmetry operation' ? ? -0.56927378 -0.82214802 0.00000000 0.00000 0.82214802 -0.56927378 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.96720 48 'helical symmetry operation' ? ? -0.83610812 -0.54856469 0.00000000 0.00000 0.54856469 -0.83610812 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.37480 49 'helical symmetry operation' ? ? -0.98083020 -0.19486436 0.00000000 0.00000 0.19486436 -0.98083020 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 33.78240 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER B 8 ? PHE B 12 ? SER A 8 PHE A 12 5 ? 5 HELX_P HELX_P2 2 ASP B 19 ? ASN B 29 ? ASP A 19 ASN A 29 1 ? 11 HELX_P HELX_P3 3 THR B 37 ? VAL B 51 ? THR A 37 VAL A 51 1 ? 15 HELX_P HELX_P4 4 LEU B 76 ? ALA B 82 ? LEU A 76 ALA A 82 1 ? 7 HELX_P HELX_P5 5 ALA B 82 ? ASP B 88 ? ALA A 82 ASP A 88 1 ? 7 HELX_P HELX_P6 6 ARG B 92 ? GLU B 97 ? ARG A 92 GLU A 97 1 ? 6 HELX_P HELX_P7 7 THR B 103 ? VAL B 130 ? THR A 103 VAL A 130 1 ? 28 HELX_P HELX_P8 8 ARG B 141 ? GLU B 145 ? ARG A 141 GLU A 145 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 99 B . ? GLN 99 A ALA 100 B ? ALA 100 A 1 14.45 2 SER 148 B . ? SER 148 A GLY 149 B ? GLY 149 A 1 -3.17 3 ASN 91 B . ? ASN 91 A ARG 92 B ? ARG 92 A 2 -22.46 4 GLN 99 B . ? GLN 99 A ALA 100 B ? ALA 100 A 2 9.07 5 SER 148 B . ? SER 148 A GLY 149 B ? GLY 149 A 2 2.07 6 GLN 99 B . ? GLN 99 A ALA 100 B ? ALA 100 A 3 19.61 7 SER 148 B . ? SER 148 A GLY 149 B ? GLY 149 A 3 -2.88 8 GLN 99 B . ? GLN 99 A ALA 100 B ? ALA 100 A 4 6.74 9 SER 148 B . ? SER 148 A GLY 149 B ? GLY 149 A 4 -2.07 10 GLN 99 B . ? GLN 99 A ALA 100 B ? ALA 100 A 5 4.45 11 SER 148 B . ? SER 148 A GLY 149 B ? GLY 149 A 5 -1.12 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP B 17 ? ALA B 18 ? TRP A 17 ALA A 18 A 2 PHE B 67 ? TYR B 70 ? PHE A 67 TYR A 70 A 3 SER B 138 ? ASN B 140 ? SER A 138 ASN A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA B 18 ? N ALA A 18 O VAL B 69 ? O VAL A 69 A 2 3 N LYS B 68 ? N LYS A 68 O TYR B 139 ? O TYR A 139 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 5 ? A -105.46 -73.95 2 1 SER A 14 ? A -17.30 177.63 3 1 SER A 15 ? A -105.62 53.56 4 1 ALA A 18 ? A -170.59 -179.76 5 1 ASN A 33 ? A -160.83 -164.40 6 1 VAL A 58 ? A -68.59 -72.02 7 1 ASP A 64 ? A -74.71 -71.22 8 1 ALA A 74 ? A -35.88 -20.35 9 1 GLU A 97 ? A -63.26 98.75 10 1 ALA A 100 ? A -163.17 -137.04 11 1 ASN A 101 ? A 82.06 114.07 12 1 THR A 103 ? A 68.07 129.41 13 1 ARG A 141 ? A -19.67 -52.66 14 1 SER A 148 ? A -120.46 -52.09 15 2 LEU A 13 ? B -96.44 52.52 16 2 LEU A 31 ? B -57.45 -7.87 17 2 ASN A 33 ? B -162.61 -156.17 18 2 VAL A 58 ? B -66.08 -70.16 19 2 ALA A 74 ? B -36.67 -19.79 20 2 ALA A 100 ? B -151.65 -131.61 21 2 ASN A 101 ? B 70.96 108.26 22 2 THR A 103 ? B 76.41 142.05 23 2 ARG A 141 ? B -12.56 -62.19 24 3 THR A 5 ? C -120.74 -67.29 25 3 SER A 15 ? C -58.87 68.92 26 3 ASN A 33 ? C -160.95 -161.66 27 3 ALA A 74 ? C -35.31 -18.88 28 3 ALA A 100 ? C -162.44 -134.32 29 3 ASN A 101 ? C 98.02 123.59 30 3 THR A 103 ? C 85.93 140.74 31 4 SER A 15 ? D -95.90 49.76 32 4 ASN A 33 ? D -162.39 -156.23 33 4 ALA A 74 ? D -34.93 -18.23 34 4 GLU A 97 ? D -64.21 95.75 35 4 ALA A 100 ? D -156.93 -146.27 36 4 ASN A 101 ? D 77.81 153.21 37 4 PRO A 102 ? D -54.19 -83.98 38 4 THR A 103 ? D 82.10 146.62 39 4 THR A 107 ? D -93.02 33.17 40 4 LEU A 108 ? D -109.48 -60.83 41 4 ARG A 141 ? D -18.45 -49.42 42 4 SER A 147 ? D -152.49 52.70 43 5 THR A 5 ? E -115.72 -71.43 44 5 ASN A 33 ? E -162.56 -156.83 45 5 VAL A 58 ? E -65.94 -70.67 46 5 ALA A 74 ? E -36.46 -20.30 47 5 ASN A 98 ? E -145.93 50.33 48 5 ALA A 100 ? E -149.74 -120.32 49 5 ASN A 101 ? E 80.40 146.27 50 5 THR A 103 ? E 91.11 135.28 51 5 ARG A 141 ? E -14.88 -59.33 52 5 SER A 147 ? E -147.98 13.83 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PRO A 54 ? A SER A 55 ? A 140.59 2 1 ASN A 91 ? A ARG A 92 ? A -42.73 3 2 PRO A 54 ? B SER A 55 ? B 137.74 4 3 PRO A 54 ? C SER A 55 ? C 117.16 5 3 ASN A 91 ? C ARG A 92 ? C -30.93 6 4 PRO A 54 ? D SER A 55 ? D 130.79 7 4 ASN A 91 ? D ARG A 92 ? D -36.93 8 5 PRO A 54 ? E SER A 55 ? E 121.61 9 5 ASN A 91 ? E ARG A 92 ? E -44.60 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LEU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 13 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id A _pdbx_validate_main_chain_plane.improper_torsion_angle 10.45 # _pdbx_helical_symmetry.entry_id 2OM3 _pdbx_helical_symmetry.number_of_operations 49 _pdbx_helical_symmetry.rotation_per_n_subunits 22.031800 _pdbx_helical_symmetry.rise_per_n_subunits 1.407600 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # loop_ _pdbx_struct_legacy_oper_list.id _pdbx_struct_legacy_oper_list.name _pdbx_struct_legacy_oper_list.matrix[1][1] _pdbx_struct_legacy_oper_list.matrix[1][2] _pdbx_struct_legacy_oper_list.matrix[1][3] _pdbx_struct_legacy_oper_list.vector[1] _pdbx_struct_legacy_oper_list.matrix[2][1] _pdbx_struct_legacy_oper_list.matrix[2][2] _pdbx_struct_legacy_oper_list.matrix[2][3] _pdbx_struct_legacy_oper_list.vector[2] _pdbx_struct_legacy_oper_list.matrix[3][1] _pdbx_struct_legacy_oper_list.matrix[3][2] _pdbx_struct_legacy_oper_list.matrix[3][3] _pdbx_struct_legacy_oper_list.vector[3] 1 'helical symmetry operation' -0.98083020 0.19486436 0.00000000 0.00000 -0.19486436 -0.98083020 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -33.78240 2 'helical symmetry operation' -0.83610812 0.54856469 0.00000000 0.00000 -0.54856469 -0.83610812 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.37480 3 'helical symmetry operation' -0.56927378 0.82214802 0.00000000 0.00000 -0.82214802 -0.56927378 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.96720 4 'helical symmetry operation' -0.21929792 0.97565794 0.00000000 0.00000 -0.97565794 -0.21929792 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -29.55960 5 'helical symmetry operation' 0.16270605 0.98667459 0.00000000 0.00000 -0.98667459 0.16270605 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.15200 6 'helical symmetry operation' 0.52094706 0.85358899 0.00000000 0.00000 -0.85358899 0.52094706 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -26.74440 7 'helical symmetry operation' 0.80310459 0.59583808 0.00000000 0.00000 -0.59583808 0.80310459 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.33680 8 'helical symmetry operation' 0.96796998 0.25106597 0.00000000 0.00000 -0.25106597 0.96796998 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.92920 9 'helical symmetry operation' 0.99146490 -0.13037392 0.00000000 0.00000 0.13037392 0.99146490 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.52160 10 'helical symmetry operation' 0.87015795 -0.49277290 0.00000000 0.00000 0.49277290 0.87015795 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.11400 11 'helical symmetry operation' 0.62176583 -0.78320320 0.00000000 0.00000 0.78320320 0.62176583 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.70640 12 'helical symmetry operation' 0.28256581 -0.95924792 0.00000000 0.00000 0.95924792 0.28256581 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.29880 13 'helical symmetry operation' -0.09790250 -0.99519601 0.00000000 0.00000 0.99519601 -0.09790250 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.89120 14 'helical symmetry operation' -0.46407231 -0.88579732 0.00000000 0.00000 0.88579732 -0.46407231 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.48360 15 'helical symmetry operation' -0.76246510 -0.64702935 0.00000000 0.00000 0.64702935 -0.76246510 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.07600 16 'helical symmetry operation' -0.94950108 -0.31376377 0.00000000 0.00000 0.31376377 -0.94950108 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.66840 17 'helical symmetry operation' -0.99786394 0.06532650 0.00000000 0.00000 -0.06532650 -0.99786394 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.26080 18 'helical symmetry operation' -0.90049038 0.43487594 0.00000000 0.00000 -0.43487594 -0.90049038 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.85320 19 'helical symmetry operation' -0.67160163 0.74091245 0.00000000 0.00000 -0.74091245 -0.67160163 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.44560 20 'helical symmetry operation' -0.34462654 0.93873987 0.00000000 0.00000 -0.93873987 -0.34462654 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.03800 21 'helical symmetry operation' 0.03268071 0.99946584 0.00000000 0.00000 -0.99946584 0.03268071 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.63040 22 'helical symmetry operation' 0.40521499 0.91422143 0.00000000 0.00000 -0.91422143 0.40521499 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.22280 23 'helical symmetry operation' 0.71856827 0.69545643 0.00000000 0.00000 -0.69545643 0.71856827 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.81520 24 'helical symmetry operation' 0.92697580 0.37512114 0.00000000 0.00000 -0.37512114 0.92697580 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.40760 25 'helical symmetry operation' 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 26 'helical symmetry operation' 0.92697580 -0.37512114 0.00000000 0.00000 0.37512114 0.92697580 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.40760 27 'helical symmetry operation' 0.71856827 -0.69545643 0.00000000 0.00000 0.69545643 0.71856827 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.81520 28 'helical symmetry operation' 0.40521499 -0.91422143 0.00000000 0.00000 0.91422143 0.40521499 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.22280 29 'helical symmetry operation' 0.03268071 -0.99946584 0.00000000 0.00000 0.99946584 0.03268071 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.63040 30 'helical symmetry operation' -0.34462654 -0.93873987 0.00000000 0.00000 0.93873987 -0.34462654 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.03800 31 'helical symmetry operation' -0.67160163 -0.74091245 0.00000000 0.00000 0.74091245 -0.67160163 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.44560 32 'helical symmetry operation' -0.90049038 -0.43487594 0.00000000 0.00000 0.43487594 -0.90049038 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.85320 33 'helical symmetry operation' -0.99786394 -0.06532650 0.00000000 0.00000 0.06532650 -0.99786394 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.26080 34 'helical symmetry operation' -0.94950108 0.31376377 0.00000000 0.00000 -0.31376377 -0.94950108 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.66840 35 'helical symmetry operation' -0.76246510 0.64702935 0.00000000 0.00000 -0.64702935 -0.76246510 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.07600 36 'helical symmetry operation' -0.46407231 0.88579732 0.00000000 0.00000 -0.88579732 -0.46407231 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.48360 37 'helical symmetry operation' -0.09790250 0.99519601 0.00000000 0.00000 -0.99519601 -0.09790250 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.89120 38 'helical symmetry operation' 0.28256581 0.95924792 0.00000000 0.00000 -0.95924792 0.28256581 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.29880 39 'helical symmetry operation' 0.62176583 0.78320320 0.00000000 0.00000 -0.78320320 0.62176583 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.70640 40 'helical symmetry operation' 0.87015795 0.49277290 0.00000000 0.00000 -0.49277290 0.87015795 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.11400 41 'helical symmetry operation' 0.99146490 0.13037392 0.00000000 0.00000 -0.13037392 0.99146490 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.52160 42 'helical symmetry operation' 0.96796998 -0.25106597 0.00000000 0.00000 0.25106597 0.96796998 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.92920 43 'helical symmetry operation' 0.80310459 -0.59583808 0.00000000 0.00000 0.59583808 0.80310459 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.33680 44 'helical symmetry operation' 0.52094706 -0.85358899 0.00000000 0.00000 0.85358899 0.52094706 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 26.74440 45 'helical symmetry operation' 0.16270605 -0.98667459 0.00000000 0.00000 0.98667459 0.16270605 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.15200 46 'helical symmetry operation' -0.21929792 -0.97565794 0.00000000 0.00000 0.97565794 -0.21929792 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 29.55960 47 'helical symmetry operation' -0.56927378 -0.82214802 0.00000000 0.00000 0.82214802 -0.56927378 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.96720 48 'helical symmetry operation' -0.83610812 -0.54856469 0.00000000 0.00000 0.54856469 -0.83610812 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.37480 49 'helical symmetry operation' -0.98083020 -0.19486436 0.00000000 0.00000 0.19486436 -0.98083020 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 33.78240 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2OM3 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ;Minimization of least-square difference between observed and calculated densities ; _em_3d_fitting.details ;METHOD--Torsion angle molecular dynamics REFINEMENT PROTOCOL--Real-space molecular dynamics ; _em_3d_fitting.method ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 2TMV _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 2TMV _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 2OM3 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Single-particel helical reconstruction' _em_3d_reconstruction.nominal_pixel_size 1.186 _em_3d_reconstruction.actual_pixel_size 1.163 _em_3d_reconstruction.resolution 4.4 _em_3d_reconstruction.magnification_calibration 'Maximization of FSC (resolution range 4-10 Angstrom) with atomic model' _em_3d_reconstruction.details 'SIRT algorithm implemented in the SPIDER processing package (command BP RP)' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name 'Phosphate (5mM EDTA)' _em_buffer.pH 7.4 _em_buffer.details 'Phosphate (5mM EDTA)' # _em_entity_assembly.id 1 _em_entity_assembly.name 'Tobacco Mosaic Virus' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'Helical Virus. Pitch of helix: 23 Angstrom, 49.02 subunits make up three complete turns.' _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 2OM3 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 6 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 2OM3 _em_imaging.id 1 _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.date 2005-11-22 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.specimen_id 1 _em_imaging.temperature 93 _em_imaging.nominal_defocus_min 1.5 _em_imaging.nominal_defocus_max 4.0 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2.0 _em_imaging.nominal_magnification 59000 _em_imaging.calibrated_magnification 60190 _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Quantifoil grid' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_virus_entity.id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_host_category PLANTS _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_isolate ? _em_virus_entity.empty ? _em_virus_entity.enveloped ? _em_virus_entity.details ? # _em_vitrification.entry_id 2OM3 _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'The sample was plunge-frozen at 4C.' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 2OM3 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 155 ? B GLY 155 2 1 Y 1 A PRO 156 ? B PRO 156 3 1 Y 1 A ALA 157 ? B ALA 157 4 1 Y 1 A THR 158 ? B THR 158 5 2 Y 1 A GLY 155 ? B GLY 155 6 2 Y 1 A PRO 156 ? B PRO 156 7 2 Y 1 A ALA 157 ? B ALA 157 8 2 Y 1 A THR 158 ? B THR 158 9 3 Y 1 A GLY 155 ? B GLY 155 10 3 Y 1 A PRO 156 ? B PRO 156 11 3 Y 1 A ALA 157 ? B ALA 157 12 3 Y 1 A THR 158 ? B THR 158 13 4 Y 1 A GLY 155 ? B GLY 155 14 4 Y 1 A PRO 156 ? B PRO 156 15 4 Y 1 A ALA 157 ? B ALA 157 16 4 Y 1 A THR 158 ? B THR 158 17 5 Y 1 A GLY 155 ? B GLY 155 18 5 Y 1 A PRO 156 ? B PRO 156 19 5 Y 1 A ALA 157 ? B ALA 157 20 5 Y 1 A THR 158 ? B THR 158 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 G OP3 O N N 125 G P P N N 126 G OP1 O N N 127 G OP2 O N N 128 G "O5'" O N N 129 G "C5'" C N N 130 G "C4'" C N R 131 G "O4'" O N N 132 G "C3'" C N S 133 G "O3'" O N N 134 G "C2'" C N R 135 G "O2'" O N N 136 G "C1'" C N R 137 G N9 N Y N 138 G C8 C Y N 139 G N7 N Y N 140 G C5 C Y N 141 G C6 C N N 142 G O6 O N N 143 G N1 N N N 144 G C2 C N N 145 G N2 N N N 146 G N3 N N N 147 G C4 C Y N 148 G HOP3 H N N 149 G HOP2 H N N 150 G "H5'" H N N 151 G "H5''" H N N 152 G "H4'" H N N 153 G "H3'" H N N 154 G "HO3'" H N N 155 G "H2'" H N N 156 G "HO2'" H N N 157 G "H1'" H N N 158 G H8 H N N 159 G H1 H N N 160 G H21 H N N 161 G H22 H N N 162 GLN N N N N 163 GLN CA C N S 164 GLN C C N N 165 GLN O O N N 166 GLN CB C N N 167 GLN CG C N N 168 GLN CD C N N 169 GLN OE1 O N N 170 GLN NE2 N N N 171 GLN OXT O N N 172 GLN H H N N 173 GLN H2 H N N 174 GLN HA H N N 175 GLN HB2 H N N 176 GLN HB3 H N N 177 GLN HG2 H N N 178 GLN HG3 H N N 179 GLN HE21 H N N 180 GLN HE22 H N N 181 GLN HXT H N N 182 GLU N N N N 183 GLU CA C N S 184 GLU C C N N 185 GLU O O N N 186 GLU CB C N N 187 GLU CG C N N 188 GLU CD C N N 189 GLU OE1 O N N 190 GLU OE2 O N N 191 GLU OXT O N N 192 GLU H H N N 193 GLU H2 H N N 194 GLU HA H N N 195 GLU HB2 H N N 196 GLU HB3 H N N 197 GLU HG2 H N N 198 GLU HG3 H N N 199 GLU HE2 H N N 200 GLU HXT H N N 201 GLY N N N N 202 GLY CA C N N 203 GLY C C N N 204 GLY O O N N 205 GLY OXT O N N 206 GLY H H N N 207 GLY H2 H N N 208 GLY HA2 H N N 209 GLY HA3 H N N 210 GLY HXT H N N 211 ILE N N N N 212 ILE CA C N S 213 ILE C C N N 214 ILE O O N N 215 ILE CB C N S 216 ILE CG1 C N N 217 ILE CG2 C N N 218 ILE CD1 C N N 219 ILE OXT O N N 220 ILE H H N N 221 ILE H2 H N N 222 ILE HA H N N 223 ILE HB H N N 224 ILE HG12 H N N 225 ILE HG13 H N N 226 ILE HG21 H N N 227 ILE HG22 H N N 228 ILE HG23 H N N 229 ILE HD11 H N N 230 ILE HD12 H N N 231 ILE HD13 H N N 232 ILE HXT H N N 233 LEU N N N N 234 LEU CA C N S 235 LEU C C N N 236 LEU O O N N 237 LEU CB C N N 238 LEU CG C N N 239 LEU CD1 C N N 240 LEU CD2 C N N 241 LEU OXT O N N 242 LEU H H N N 243 LEU H2 H N N 244 LEU HA H N N 245 LEU HB2 H N N 246 LEU HB3 H N N 247 LEU HG H N N 248 LEU HD11 H N N 249 LEU HD12 H N N 250 LEU HD13 H N N 251 LEU HD21 H N N 252 LEU HD22 H N N 253 LEU HD23 H N N 254 LEU HXT H N N 255 LYS N N N N 256 LYS CA C N S 257 LYS C C N N 258 LYS O O N N 259 LYS CB C N N 260 LYS CG C N N 261 LYS CD C N N 262 LYS CE C N N 263 LYS NZ N N N 264 LYS OXT O N N 265 LYS H H N N 266 LYS H2 H N N 267 LYS HA H N N 268 LYS HB2 H N N 269 LYS HB3 H N N 270 LYS HG2 H N N 271 LYS HG3 H N N 272 LYS HD2 H N N 273 LYS HD3 H N N 274 LYS HE2 H N N 275 LYS HE3 H N N 276 LYS HZ1 H N N 277 LYS HZ2 H N N 278 LYS HZ3 H N N 279 LYS HXT H N N 280 PHE N N N N 281 PHE CA C N S 282 PHE C C N N 283 PHE O O N N 284 PHE CB C N N 285 PHE CG C Y N 286 PHE CD1 C Y N 287 PHE CD2 C Y N 288 PHE CE1 C Y N 289 PHE CE2 C Y N 290 PHE CZ C Y N 291 PHE OXT O N N 292 PHE H H N N 293 PHE H2 H N N 294 PHE HA H N N 295 PHE HB2 H N N 296 PHE HB3 H N N 297 PHE HD1 H N N 298 PHE HD2 H N N 299 PHE HE1 H N N 300 PHE HE2 H N N 301 PHE HZ H N N 302 PHE HXT H N N 303 PRO N N N N 304 PRO CA C N S 305 PRO C C N N 306 PRO O O N N 307 PRO CB C N N 308 PRO CG C N N 309 PRO CD C N N 310 PRO OXT O N N 311 PRO H H N N 312 PRO HA H N N 313 PRO HB2 H N N 314 PRO HB3 H N N 315 PRO HG2 H N N 316 PRO HG3 H N N 317 PRO HD2 H N N 318 PRO HD3 H N N 319 PRO HXT H N N 320 SER N N N N 321 SER CA C N S 322 SER C C N N 323 SER O O N N 324 SER CB C N N 325 SER OG O N N 326 SER OXT O N N 327 SER H H N N 328 SER H2 H N N 329 SER HA H N N 330 SER HB2 H N N 331 SER HB3 H N N 332 SER HG H N N 333 SER HXT H N N 334 THR N N N N 335 THR CA C N S 336 THR C C N N 337 THR O O N N 338 THR CB C N R 339 THR OG1 O N N 340 THR CG2 C N N 341 THR OXT O N N 342 THR H H N N 343 THR H2 H N N 344 THR HA H N N 345 THR HB H N N 346 THR HG1 H N N 347 THR HG21 H N N 348 THR HG22 H N N 349 THR HG23 H N N 350 THR HXT H N N 351 TRP N N N N 352 TRP CA C N S 353 TRP C C N N 354 TRP O O N N 355 TRP CB C N N 356 TRP CG C Y N 357 TRP CD1 C Y N 358 TRP CD2 C Y N 359 TRP NE1 N Y N 360 TRP CE2 C Y N 361 TRP CE3 C Y N 362 TRP CZ2 C Y N 363 TRP CZ3 C Y N 364 TRP CH2 C Y N 365 TRP OXT O N N 366 TRP H H N N 367 TRP H2 H N N 368 TRP HA H N N 369 TRP HB2 H N N 370 TRP HB3 H N N 371 TRP HD1 H N N 372 TRP HE1 H N N 373 TRP HE3 H N N 374 TRP HZ2 H N N 375 TRP HZ3 H N N 376 TRP HH2 H N N 377 TRP HXT H N N 378 TYR N N N N 379 TYR CA C N S 380 TYR C C N N 381 TYR O O N N 382 TYR CB C N N 383 TYR CG C Y N 384 TYR CD1 C Y N 385 TYR CD2 C Y N 386 TYR CE1 C Y N 387 TYR CE2 C Y N 388 TYR CZ C Y N 389 TYR OH O N N 390 TYR OXT O N N 391 TYR H H N N 392 TYR H2 H N N 393 TYR HA H N N 394 TYR HB2 H N N 395 TYR HB3 H N N 396 TYR HD1 H N N 397 TYR HD2 H N N 398 TYR HE1 H N N 399 TYR HE2 H N N 400 TYR HH H N N 401 TYR HXT H N N 402 VAL N N N N 403 VAL CA C N S 404 VAL C C N N 405 VAL O O N N 406 VAL CB C N N 407 VAL CG1 C N N 408 VAL CG2 C N N 409 VAL OXT O N N 410 VAL H H N N 411 VAL H2 H N N 412 VAL HA H N N 413 VAL HB H N N 414 VAL HG11 H N N 415 VAL HG12 H N N 416 VAL HG13 H N N 417 VAL HG21 H N N 418 VAL HG22 H N N 419 VAL HG23 H N N 420 VAL HXT H N N 421 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 G OP3 P sing N N 122 G OP3 HOP3 sing N N 123 G P OP1 doub N N 124 G P OP2 sing N N 125 G P "O5'" sing N N 126 G OP2 HOP2 sing N N 127 G "O5'" "C5'" sing N N 128 G "C5'" "C4'" sing N N 129 G "C5'" "H5'" sing N N 130 G "C5'" "H5''" sing N N 131 G "C4'" "O4'" sing N N 132 G "C4'" "C3'" sing N N 133 G "C4'" "H4'" sing N N 134 G "O4'" "C1'" sing N N 135 G "C3'" "O3'" sing N N 136 G "C3'" "C2'" sing N N 137 G "C3'" "H3'" sing N N 138 G "O3'" "HO3'" sing N N 139 G "C2'" "O2'" sing N N 140 G "C2'" "C1'" sing N N 141 G "C2'" "H2'" sing N N 142 G "O2'" "HO2'" sing N N 143 G "C1'" N9 sing N N 144 G "C1'" "H1'" sing N N 145 G N9 C8 sing Y N 146 G N9 C4 sing Y N 147 G C8 N7 doub Y N 148 G C8 H8 sing N N 149 G N7 C5 sing Y N 150 G C5 C6 sing N N 151 G C5 C4 doub Y N 152 G C6 O6 doub N N 153 G C6 N1 sing N N 154 G N1 C2 sing N N 155 G N1 H1 sing N N 156 G C2 N2 sing N N 157 G C2 N3 doub N N 158 G N2 H21 sing N N 159 G N2 H22 sing N N 160 G N3 C4 sing N N 161 GLN N CA sing N N 162 GLN N H sing N N 163 GLN N H2 sing N N 164 GLN CA C sing N N 165 GLN CA CB sing N N 166 GLN CA HA sing N N 167 GLN C O doub N N 168 GLN C OXT sing N N 169 GLN CB CG sing N N 170 GLN CB HB2 sing N N 171 GLN CB HB3 sing N N 172 GLN CG CD sing N N 173 GLN CG HG2 sing N N 174 GLN CG HG3 sing N N 175 GLN CD OE1 doub N N 176 GLN CD NE2 sing N N 177 GLN NE2 HE21 sing N N 178 GLN NE2 HE22 sing N N 179 GLN OXT HXT sing N N 180 GLU N CA sing N N 181 GLU N H sing N N 182 GLU N H2 sing N N 183 GLU CA C sing N N 184 GLU CA CB sing N N 185 GLU CA HA sing N N 186 GLU C O doub N N 187 GLU C OXT sing N N 188 GLU CB CG sing N N 189 GLU CB HB2 sing N N 190 GLU CB HB3 sing N N 191 GLU CG CD sing N N 192 GLU CG HG2 sing N N 193 GLU CG HG3 sing N N 194 GLU CD OE1 doub N N 195 GLU CD OE2 sing N N 196 GLU OE2 HE2 sing N N 197 GLU OXT HXT sing N N 198 GLY N CA sing N N 199 GLY N H sing N N 200 GLY N H2 sing N N 201 GLY CA C sing N N 202 GLY CA HA2 sing N N 203 GLY CA HA3 sing N N 204 GLY C O doub N N 205 GLY C OXT sing N N 206 GLY OXT HXT sing N N 207 ILE N CA sing N N 208 ILE N H sing N N 209 ILE N H2 sing N N 210 ILE CA C sing N N 211 ILE CA CB sing N N 212 ILE CA HA sing N N 213 ILE C O doub N N 214 ILE C OXT sing N N 215 ILE CB CG1 sing N N 216 ILE CB CG2 sing N N 217 ILE CB HB sing N N 218 ILE CG1 CD1 sing N N 219 ILE CG1 HG12 sing N N 220 ILE CG1 HG13 sing N N 221 ILE CG2 HG21 sing N N 222 ILE CG2 HG22 sing N N 223 ILE CG2 HG23 sing N N 224 ILE CD1 HD11 sing N N 225 ILE CD1 HD12 sing N N 226 ILE CD1 HD13 sing N N 227 ILE OXT HXT sing N N 228 LEU N CA sing N N 229 LEU N H sing N N 230 LEU N H2 sing N N 231 LEU CA C sing N N 232 LEU CA CB sing N N 233 LEU CA HA sing N N 234 LEU C O doub N N 235 LEU C OXT sing N N 236 LEU CB CG sing N N 237 LEU CB HB2 sing N N 238 LEU CB HB3 sing N N 239 LEU CG CD1 sing N N 240 LEU CG CD2 sing N N 241 LEU CG HG sing N N 242 LEU CD1 HD11 sing N N 243 LEU CD1 HD12 sing N N 244 LEU CD1 HD13 sing N N 245 LEU CD2 HD21 sing N N 246 LEU CD2 HD22 sing N N 247 LEU CD2 HD23 sing N N 248 LEU OXT HXT sing N N 249 LYS N CA sing N N 250 LYS N H sing N N 251 LYS N H2 sing N N 252 LYS CA C sing N N 253 LYS CA CB sing N N 254 LYS CA HA sing N N 255 LYS C O doub N N 256 LYS C OXT sing N N 257 LYS CB CG sing N N 258 LYS CB HB2 sing N N 259 LYS CB HB3 sing N N 260 LYS CG CD sing N N 261 LYS CG HG2 sing N N 262 LYS CG HG3 sing N N 263 LYS CD CE sing N N 264 LYS CD HD2 sing N N 265 LYS CD HD3 sing N N 266 LYS CE NZ sing N N 267 LYS CE HE2 sing N N 268 LYS CE HE3 sing N N 269 LYS NZ HZ1 sing N N 270 LYS NZ HZ2 sing N N 271 LYS NZ HZ3 sing N N 272 LYS OXT HXT sing N N 273 PHE N CA sing N N 274 PHE N H sing N N 275 PHE N H2 sing N N 276 PHE CA C sing N N 277 PHE CA CB sing N N 278 PHE CA HA sing N N 279 PHE C O doub N N 280 PHE C OXT sing N N 281 PHE CB CG sing N N 282 PHE CB HB2 sing N N 283 PHE CB HB3 sing N N 284 PHE CG CD1 doub Y N 285 PHE CG CD2 sing Y N 286 PHE CD1 CE1 sing Y N 287 PHE CD1 HD1 sing N N 288 PHE CD2 CE2 doub Y N 289 PHE CD2 HD2 sing N N 290 PHE CE1 CZ doub Y N 291 PHE CE1 HE1 sing N N 292 PHE CE2 CZ sing Y N 293 PHE CE2 HE2 sing N N 294 PHE CZ HZ sing N N 295 PHE OXT HXT sing N N 296 PRO N CA sing N N 297 PRO N CD sing N N 298 PRO N H sing N N 299 PRO CA C sing N N 300 PRO CA CB sing N N 301 PRO CA HA sing N N 302 PRO C O doub N N 303 PRO C OXT sing N N 304 PRO CB CG sing N N 305 PRO CB HB2 sing N N 306 PRO CB HB3 sing N N 307 PRO CG CD sing N N 308 PRO CG HG2 sing N N 309 PRO CG HG3 sing N N 310 PRO CD HD2 sing N N 311 PRO CD HD3 sing N N 312 PRO OXT HXT sing N N 313 SER N CA sing N N 314 SER N H sing N N 315 SER N H2 sing N N 316 SER CA C sing N N 317 SER CA CB sing N N 318 SER CA HA sing N N 319 SER C O doub N N 320 SER C OXT sing N N 321 SER CB OG sing N N 322 SER CB HB2 sing N N 323 SER CB HB3 sing N N 324 SER OG HG sing N N 325 SER OXT HXT sing N N 326 THR N CA sing N N 327 THR N H sing N N 328 THR N H2 sing N N 329 THR CA C sing N N 330 THR CA CB sing N N 331 THR CA HA sing N N 332 THR C O doub N N 333 THR C OXT sing N N 334 THR CB OG1 sing N N 335 THR CB CG2 sing N N 336 THR CB HB sing N N 337 THR OG1 HG1 sing N N 338 THR CG2 HG21 sing N N 339 THR CG2 HG22 sing N N 340 THR CG2 HG23 sing N N 341 THR OXT HXT sing N N 342 TRP N CA sing N N 343 TRP N H sing N N 344 TRP N H2 sing N N 345 TRP CA C sing N N 346 TRP CA CB sing N N 347 TRP CA HA sing N N 348 TRP C O doub N N 349 TRP C OXT sing N N 350 TRP CB CG sing N N 351 TRP CB HB2 sing N N 352 TRP CB HB3 sing N N 353 TRP CG CD1 doub Y N 354 TRP CG CD2 sing Y N 355 TRP CD1 NE1 sing Y N 356 TRP CD1 HD1 sing N N 357 TRP CD2 CE2 doub Y N 358 TRP CD2 CE3 sing Y N 359 TRP NE1 CE2 sing Y N 360 TRP NE1 HE1 sing N N 361 TRP CE2 CZ2 sing Y N 362 TRP CE3 CZ3 doub Y N 363 TRP CE3 HE3 sing N N 364 TRP CZ2 CH2 doub Y N 365 TRP CZ2 HZ2 sing N N 366 TRP CZ3 CH2 sing Y N 367 TRP CZ3 HZ3 sing N N 368 TRP CH2 HH2 sing N N 369 TRP OXT HXT sing N N 370 TYR N CA sing N N 371 TYR N H sing N N 372 TYR N H2 sing N N 373 TYR CA C sing N N 374 TYR CA CB sing N N 375 TYR CA HA sing N N 376 TYR C O doub N N 377 TYR C OXT sing N N 378 TYR CB CG sing N N 379 TYR CB HB2 sing N N 380 TYR CB HB3 sing N N 381 TYR CG CD1 doub Y N 382 TYR CG CD2 sing Y N 383 TYR CD1 CE1 sing Y N 384 TYR CD1 HD1 sing N N 385 TYR CD2 CE2 doub Y N 386 TYR CD2 HD2 sing N N 387 TYR CE1 CZ doub Y N 388 TYR CE1 HE1 sing N N 389 TYR CE2 CZ sing Y N 390 TYR CE2 HE2 sing N N 391 TYR CZ OH sing N N 392 TYR OH HH sing N N 393 TYR OXT HXT sing N N 394 VAL N CA sing N N 395 VAL N H sing N N 396 VAL N H2 sing N N 397 VAL CA C sing N N 398 VAL CA CB sing N N 399 VAL CA HA sing N N 400 VAL C O doub N N 401 VAL C OXT sing N N 402 VAL CB CG1 sing N N 403 VAL CB CG2 sing N N 404 VAL CB HB sing N N 405 VAL CG1 HG11 sing N N 406 VAL CG1 HG12 sing N N 407 VAL CG1 HG13 sing N N 408 VAL CG2 HG21 sing N N 409 VAL CG2 HG22 sing N N 410 VAL CG2 HG23 sing N N 411 VAL OXT HXT sing N N 412 # _em_ctf_correction.id 1 _em_ctf_correction.details 'Phase correction and amplitude weighting adapted from Grigorieff 1998(after determination of CTF and specimen tilt)' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 X-PLOR ? 'MODEL FITTING' ? ? 2 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 2.5 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 4097 _em_virus_natural_host.organism 'Nicotiana tabacum' _em_virus_natural_host.strain ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2TMV # loop_ _pdbx_struct_entity_inst.id _pdbx_struct_entity_inst.entity_id _pdbx_struct_entity_inst.details R 1 'TOBACCO MOSAIC VIRUS RNA' A 2 'COAT PROTEIN' # loop_ _pdbx_struct_msym_gen.msym_id _pdbx_struct_msym_gen.oper_expression _pdbx_struct_msym_gen.entity_inst_id R H R A H A # _atom_sites.entry_id 2OM3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_