HEADER VIRUS 20-JAN-07 2OM3 TITLE HIGH-RESOLUTION CRYO-EM STRUCTURE OF TOBACCO MOSAIC VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOBACCO MOSAIC VIRUS RNA; COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COAT PROTEIN; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: CAPSID PROTEIN SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: TOBACCO MOSAIC VIRUS; SOURCE 5 ORGANISM_TAXID: 12242 KEYWDS PROTEIN-RNA COMPLEX, FOUR-HELICAL UP-AND-DOWN BUNDLE, HELICAL VIRUS, KEYWDS 2 VIRUS EXPDTA ELECTRON MICROSCOPY NUMMDL 5 AUTHOR C.SACHSE REVDAT 6 27-DEC-23 2OM3 1 REMARK REVDAT 5 18-DEC-19 2OM3 1 CRYST1 SCALE REVDAT 4 18-JUL-18 2OM3 1 REMARK REVDAT 3 24-FEB-09 2OM3 1 VERSN REVDAT 2 23-OCT-07 2OM3 1 REMARK REVDAT 1 16-OCT-07 2OM3 0 JRNL AUTH C.SACHSE,J.Z.CHEN,P.D.COUREUX,M.E.STROUPE,M.FANDRICH, JRNL AUTH 2 N.GRIGORIEFF JRNL TITL HIGH-RESOLUTION ELECTRON MICROSCOPY OF HELICAL SPECIMENS: A JRNL TITL 2 FRESH LOOK AT TOBACCO MOSAIC VIRUS. JRNL REF J.MOL.BIOL. V. 371 812 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17585939 JRNL DOI 10.1016/J.JMB.2007.05.088 REMARK 2 REMARK 2 RESOLUTION. 4.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : X-PLOR, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2TMV REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : MINIMIZATION OF LEAST-SQUARE REMARK 3 DIFFERENCE BETWEEN OBSERVED AND REMARK 3 CALCULATED DENSITIES REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--TORSION ANGLE MOLECULAR DYNAMICS REMARK 3 REFINEMENT PROTOCOL--REAL-SPACE MOLECULAR DYNAMICS REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.186 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.400 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: MAXIMIZATION OF FSC REMARK 3 (RESOLUTION RANGE 4-10 ANGSTROM) WITH ATOMIC MODEL REMARK 3 REMARK 3 OTHER DETAILS: SIRT ALGORITHM IMPLEMENTED IN THE SPIDER PROCESSING REMARK 3 PACKAGE (COMMAND BP RP) REMARK 4 REMARK 4 2OM3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041305. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TOBACCO MOSAIC VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL GRID REMARK 245 SAMPLE VITRIFICATION DETAILS : THE SAMPLE WAS PLUNGE-FROZEN AT REMARK 245 4C. REMARK 245 SAMPLE BUFFER : PHOSPHATE (5MM EDTA) REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : HELICAL VIRUS. PITCH OF HELIX: REMARK 245 23 ANGSTROM, 49.02 SUBUNITS MAKE UP THREE COMPLETE TURNS. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 22-NOV-05 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1.50 REMARK 245 MAXIMUM DEFOCUS (NM) : 4.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : 60190 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 22.03 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 1.41 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, A REMARK 350 BIOMT1 1 -0.980830 0.194864 0.000000 0.00000 REMARK 350 BIOMT2 1 -0.194864 -0.980830 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -33.78240 REMARK 350 BIOMT1 2 -0.836108 0.548565 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.548565 -0.836108 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -32.37480 REMARK 350 BIOMT1 3 -0.569274 0.822148 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.822148 -0.569274 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -30.96720 REMARK 350 BIOMT1 4 -0.219298 0.975658 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.975658 -0.219298 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -29.55960 REMARK 350 BIOMT1 5 0.162706 0.986675 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.986675 0.162706 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -28.15200 REMARK 350 BIOMT1 6 0.520947 0.853589 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.853589 0.520947 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -26.74440 REMARK 350 BIOMT1 7 0.803105 0.595838 0.000000 0.00000 REMARK 350 BIOMT2 7 -0.595838 0.803105 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -25.33680 REMARK 350 BIOMT1 8 0.967970 0.251066 0.000000 0.00000 REMARK 350 BIOMT2 8 -0.251066 0.967970 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -23.92920 REMARK 350 BIOMT1 9 0.991465 -0.130374 0.000000 0.00000 REMARK 350 BIOMT2 9 0.130374 0.991465 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -22.52160 REMARK 350 BIOMT1 10 0.870158 -0.492773 0.000000 0.00000 REMARK 350 BIOMT2 10 0.492773 0.870158 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -21.11400 REMARK 350 BIOMT1 11 0.621766 -0.783203 0.000000 0.00000 REMARK 350 BIOMT2 11 0.783203 0.621766 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -19.70640 REMARK 350 BIOMT1 12 0.282566 -0.959248 0.000000 0.00000 REMARK 350 BIOMT2 12 0.959248 0.282566 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -18.29880 REMARK 350 BIOMT1 13 -0.097903 -0.995196 0.000000 0.00000 REMARK 350 BIOMT2 13 0.995196 -0.097903 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -16.89120 REMARK 350 BIOMT1 14 -0.464072 -0.885797 0.000000 0.00000 REMARK 350 BIOMT2 14 0.885797 -0.464072 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -15.48360 REMARK 350 BIOMT1 15 -0.762465 -0.647029 0.000000 0.00000 REMARK 350 BIOMT2 15 0.647029 -0.762465 0.000000 0.00000 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -14.07600 REMARK 350 BIOMT1 16 -0.949501 -0.313764 0.000000 0.00000 REMARK 350 BIOMT2 16 0.313764 -0.949501 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -12.66840 REMARK 350 BIOMT1 17 -0.997864 0.065326 0.000000 0.00000 REMARK 350 BIOMT2 17 -0.065326 -0.997864 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -11.26080 REMARK 350 BIOMT1 18 -0.900490 0.434876 0.000000 0.00000 REMARK 350 BIOMT2 18 -0.434876 -0.900490 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -9.85320 REMARK 350 BIOMT1 19 -0.671602 0.740912 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.740912 -0.671602 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -8.44560 REMARK 350 BIOMT1 20 -0.344627 0.938740 0.000000 0.00000 REMARK 350 BIOMT2 20 -0.938740 -0.344627 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -7.03800 REMARK 350 BIOMT1 21 0.032681 0.999466 0.000000 0.00000 REMARK 350 BIOMT2 21 -0.999466 0.032681 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -5.63040 REMARK 350 BIOMT1 22 0.405215 0.914221 0.000000 0.00000 REMARK 350 BIOMT2 22 -0.914221 0.405215 0.000000 0.00000 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -4.22280 REMARK 350 BIOMT1 23 0.718568 0.695456 0.000000 0.00000 REMARK 350 BIOMT2 23 -0.695456 0.718568 0.000000 0.00000 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -2.81520 REMARK 350 BIOMT1 24 0.926976 0.375121 0.000000 0.00000 REMARK 350 BIOMT2 24 -0.375121 0.926976 0.000000 0.00000 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -1.40760 REMARK 350 BIOMT1 25 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 25 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 26 0.926976 -0.375121 0.000000 0.00000 REMARK 350 BIOMT2 26 0.375121 0.926976 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 1.40760 REMARK 350 BIOMT1 27 0.718568 -0.695456 0.000000 0.00000 REMARK 350 BIOMT2 27 0.695456 0.718568 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 2.81520 REMARK 350 BIOMT1 28 0.405215 -0.914221 0.000000 0.00000 REMARK 350 BIOMT2 28 0.914221 0.405215 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 4.22280 REMARK 350 BIOMT1 29 0.032681 -0.999466 0.000000 0.00000 REMARK 350 BIOMT2 29 0.999466 0.032681 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 5.63040 REMARK 350 BIOMT1 30 -0.344627 -0.938740 0.000000 0.00000 REMARK 350 BIOMT2 30 0.938740 -0.344627 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 7.03800 REMARK 350 BIOMT1 31 -0.671602 -0.740912 0.000000 0.00000 REMARK 350 BIOMT2 31 0.740912 -0.671602 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 8.44560 REMARK 350 BIOMT1 32 -0.900490 -0.434876 0.000000 0.00000 REMARK 350 BIOMT2 32 0.434876 -0.900490 0.000000 0.00000 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 9.85320 REMARK 350 BIOMT1 33 -0.997864 -0.065326 0.000000 0.00000 REMARK 350 BIOMT2 33 0.065326 -0.997864 0.000000 0.00000 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 11.26080 REMARK 350 BIOMT1 34 -0.949501 0.313764 0.000000 0.00000 REMARK 350 BIOMT2 34 -0.313764 -0.949501 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 12.66840 REMARK 350 BIOMT1 35 -0.762465 0.647029 0.000000 0.00000 REMARK 350 BIOMT2 35 -0.647029 -0.762465 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 14.07600 REMARK 350 BIOMT1 36 -0.464072 0.885797 0.000000 0.00000 REMARK 350 BIOMT2 36 -0.885797 -0.464072 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 15.48360 REMARK 350 BIOMT1 37 -0.097903 0.995196 0.000000 0.00000 REMARK 350 BIOMT2 37 -0.995196 -0.097903 0.000000 0.00000 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 16.89120 REMARK 350 BIOMT1 38 0.282566 0.959248 0.000000 0.00000 REMARK 350 BIOMT2 38 -0.959248 0.282566 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 18.29880 REMARK 350 BIOMT1 39 0.621766 0.783203 0.000000 0.00000 REMARK 350 BIOMT2 39 -0.783203 0.621766 0.000000 0.00000 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 19.70640 REMARK 350 BIOMT1 40 0.870158 0.492773 0.000000 0.00000 REMARK 350 BIOMT2 40 -0.492773 0.870158 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 21.11400 REMARK 350 BIOMT1 41 0.991465 0.130374 0.000000 0.00000 REMARK 350 BIOMT2 41 -0.130374 0.991465 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 22.52160 REMARK 350 BIOMT1 42 0.967970 -0.251066 0.000000 0.00000 REMARK 350 BIOMT2 42 0.251066 0.967970 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 23.92920 REMARK 350 BIOMT1 43 0.803105 -0.595838 0.000000 0.00000 REMARK 350 BIOMT2 43 0.595838 0.803105 0.000000 0.00000 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 25.33680 REMARK 350 BIOMT1 44 0.520947 -0.853589 0.000000 0.00000 REMARK 350 BIOMT2 44 0.853589 0.520947 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 26.74440 REMARK 350 BIOMT1 45 0.162706 -0.986675 0.000000 0.00000 REMARK 350 BIOMT2 45 0.986675 0.162706 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 28.15200 REMARK 350 BIOMT1 46 -0.219298 -0.975658 0.000000 0.00000 REMARK 350 BIOMT2 46 0.975658 -0.219298 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 29.55960 REMARK 350 BIOMT1 47 -0.569274 -0.822148 0.000000 0.00000 REMARK 350 BIOMT2 47 0.822148 -0.569274 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 30.96720 REMARK 350 BIOMT1 48 -0.836108 -0.548565 0.000000 0.00000 REMARK 350 BIOMT2 48 0.548565 -0.836108 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 32.37480 REMARK 350 BIOMT1 49 -0.980830 -0.194864 0.000000 0.00000 REMARK 350 BIOMT2 49 0.194864 -0.980830 0.000000 0.00000 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 33.78240 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 GLY A 155 REMARK 465 1 PRO A 156 REMARK 465 1 ALA A 157 REMARK 465 1 THR A 158 REMARK 465 2 GLY A 155 REMARK 465 2 PRO A 156 REMARK 465 2 ALA A 157 REMARK 465 2 THR A 158 REMARK 465 3 GLY A 155 REMARK 465 3 PRO A 156 REMARK 465 3 ALA A 157 REMARK 465 3 THR A 158 REMARK 465 4 GLY A 155 REMARK 465 4 PRO A 156 REMARK 465 4 ALA A 157 REMARK 465 4 THR A 158 REMARK 465 5 GLY A 155 REMARK 465 5 PRO A 156 REMARK 465 5 ALA A 157 REMARK 465 5 THR A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 5 -73.95 -105.46 REMARK 500 1 SER A 14 177.63 -17.30 REMARK 500 1 SER A 15 53.56 -105.62 REMARK 500 1 ALA A 18 -179.76 -170.59 REMARK 500 1 ASN A 33 -164.40 -160.83 REMARK 500 1 VAL A 58 -72.02 -68.59 REMARK 500 1 ASP A 64 -71.22 -74.71 REMARK 500 1 ALA A 74 -20.35 -35.88 REMARK 500 1 GLU A 97 98.75 -63.26 REMARK 500 1 ALA A 100 -137.04 -163.17 REMARK 500 1 ASN A 101 114.07 82.06 REMARK 500 1 THR A 103 129.41 68.07 REMARK 500 1 ARG A 141 -52.66 -19.67 REMARK 500 1 SER A 148 -52.09 -120.46 REMARK 500 2 LEU A 13 52.52 -96.44 REMARK 500 2 LEU A 31 -7.87 -57.45 REMARK 500 2 ASN A 33 -156.17 -162.61 REMARK 500 2 VAL A 58 -70.16 -66.08 REMARK 500 2 ALA A 74 -19.79 -36.67 REMARK 500 2 ALA A 100 -131.61 -151.65 REMARK 500 2 ASN A 101 108.26 70.96 REMARK 500 2 THR A 103 142.05 76.41 REMARK 500 2 ARG A 141 -62.19 -12.56 REMARK 500 3 THR A 5 -67.29 -120.74 REMARK 500 3 SER A 15 68.92 -58.87 REMARK 500 3 ASN A 33 -161.66 -160.95 REMARK 500 3 ALA A 74 -18.88 -35.31 REMARK 500 3 ALA A 100 -134.32 -162.44 REMARK 500 3 ASN A 101 123.59 98.02 REMARK 500 3 THR A 103 140.74 85.93 REMARK 500 4 SER A 15 49.76 -95.90 REMARK 500 4 ASN A 33 -156.23 -162.39 REMARK 500 4 ALA A 74 -18.23 -34.93 REMARK 500 4 GLU A 97 95.75 -64.21 REMARK 500 4 ALA A 100 -146.27 -156.93 REMARK 500 4 ASN A 101 153.21 77.81 REMARK 500 4 PRO A 102 -83.98 -54.19 REMARK 500 4 THR A 103 146.62 82.10 REMARK 500 4 THR A 107 33.17 -93.02 REMARK 500 4 LEU A 108 -60.83 -109.48 REMARK 500 4 ARG A 141 -49.42 -18.45 REMARK 500 4 SER A 147 52.70 -152.49 REMARK 500 5 THR A 5 -71.43 -115.72 REMARK 500 5 ASN A 33 -156.83 -162.56 REMARK 500 5 VAL A 58 -70.67 -65.94 REMARK 500 5 ALA A 74 -20.30 -36.46 REMARK 500 5 ASN A 98 50.33 -145.93 REMARK 500 5 ALA A 100 -120.32 -149.74 REMARK 500 5 ASN A 101 146.27 80.40 REMARK 500 5 THR A 103 135.28 91.11 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 54 SER A 55 1 140.59 REMARK 500 ASN A 91 ARG A 92 1 -42.73 REMARK 500 PRO A 54 SER A 55 2 137.74 REMARK 500 PRO A 54 SER A 55 3 117.16 REMARK 500 ASN A 91 ARG A 92 3 -30.93 REMARK 500 PRO A 54 SER A 55 4 130.79 REMARK 500 ASN A 91 ARG A 92 4 -36.93 REMARK 500 PRO A 54 SER A 55 5 121.61 REMARK 500 ASN A 91 ARG A 92 5 -44.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 LEU A 13 10.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TMV RELATED DB: PDB REMARK 900 THE SAME PROTEIN/RNA COMPLEX RESOLVED BY X-RAY FIBER DIFFRACTION REMARK 900 RELATED ID: 1EI7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE RNA-FREE DISK PROTEIN RESOLVED BY X-RAY REMARK 900 CRYSTALLOGRAPHY REMARK 900 RELATED ID: EMD-1316 RELATED DB: EMDB DBREF 2OM3 A 1 158 UNP Q77LT8 Q77LT8_9VIRU 2 159 DBREF 2OM3 R 4 6 PDB 2OM3 2OM3 4 6 SEQRES 1 R 3 G A A SEQRES 1 A 158 SER TYR SER ILE THR THR PRO SER GLN PHE VAL PHE LEU SEQRES 2 A 158 SER SER ALA TRP ALA ASP PRO ILE GLU LEU ILE ASN LEU SEQRES 3 A 158 CYS THR ASN ALA LEU GLY ASN GLN PHE GLN THR GLN GLN SEQRES 4 A 158 ALA ARG THR VAL VAL GLN ARG GLN PHE SER GLU VAL TRP SEQRES 5 A 158 LYS PRO SER PRO GLN VAL THR VAL ARG PHE PRO ASP SER SEQRES 6 A 158 ASP PHE LYS VAL TYR ARG TYR ASN ALA VAL LEU ASP PRO SEQRES 7 A 158 LEU VAL THR ALA LEU LEU GLY ALA PHE ASP THR ARG ASN SEQRES 8 A 158 ARG ILE ILE GLU VAL GLU ASN GLN ALA ASN PRO THR THR SEQRES 9 A 158 ALA GLU THR LEU ASP ALA THR ARG ARG VAL ASP ASP ALA SEQRES 10 A 158 THR VAL ALA ILE ARG SER ALA ILE ASN ASN LEU ILE VAL SEQRES 11 A 158 GLU LEU ILE ARG GLY THR GLY SER TYR ASN ARG SER SER SEQRES 12 A 158 PHE GLU SER SER SER GLY LEU VAL TRP THR SER GLY PRO SEQRES 13 A 158 ALA THR HELIX 1 1 SER A 8 PHE A 12 5 5 HELIX 2 2 ASP A 19 ASN A 29 1 11 HELIX 3 3 THR A 37 VAL A 51 1 15 HELIX 4 4 LEU A 76 ALA A 82 1 7 HELIX 5 5 ALA A 82 ASP A 88 1 7 HELIX 6 6 ARG A 92 GLU A 97 1 6 HELIX 7 7 THR A 103 VAL A 130 1 28 HELIX 8 8 ARG A 141 GLU A 145 1 5 SHEET 1 A 3 TRP A 17 ALA A 18 0 SHEET 2 A 3 PHE A 67 TYR A 70 -1 O VAL A 69 N ALA A 18 SHEET 3 A 3 SER A 138 ASN A 140 -1 O TYR A 139 N LYS A 68 CISPEP 1 GLN A 99 ALA A 100 1 14.45 CISPEP 2 SER A 148 GLY A 149 1 -3.17 CISPEP 3 ASN A 91 ARG A 92 2 -22.46 CISPEP 4 GLN A 99 ALA A 100 2 9.07 CISPEP 5 SER A 148 GLY A 149 2 2.07 CISPEP 6 GLN A 99 ALA A 100 3 19.61 CISPEP 7 SER A 148 GLY A 149 3 -2.88 CISPEP 8 GLN A 99 ALA A 100 4 6.74 CISPEP 9 SER A 148 GLY A 149 4 -2.07 CISPEP 10 GLN A 99 ALA A 100 5 4.45 CISPEP 11 SER A 148 GLY A 149 5 -1.12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1