HEADER UNKNOWN FUNCTION 29-JAN-07 2OPL TITLE CRYSTAL STRUCTURE OF AN OSMC-LIKE PROTEIN (GSU2788) FROM GEOBACTER TITLE 2 SULFURREDUCENS AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 STRAIN: DSM 12127, PCA; SOURCE 5 ATCC: 51573; SOURCE 6 GENE: NP_953832.1, GSU2788; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 14 ORGANISM_TAXID: 35554; SOURCE 15 STRAIN: DSM 12127, PCA; SOURCE 16 ATCC: 51573; SOURCE 17 GENE: NP_953832.1, GSU2788; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2OPL 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OPL 1 REMARK REVDAT 4 13-JUL-11 2OPL 1 VERSN REVDAT 3 23-MAR-11 2OPL 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2OPL 1 VERSN REVDAT 1 13-FEB-07 2OPL 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (NP_953832.1) FROM JRNL TITL 2 GEOBACTER SULFURREDUCENS AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 60667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 12.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3091 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2945 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4243 ; 1.487 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6874 ; 0.827 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 5.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.408 ;24.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;12.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3498 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 650 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3066 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1481 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1883 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 311 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.098 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1923 ; 0.777 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 780 ; 0.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3145 ; 1.371 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1189 ; 2.353 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 3.730 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 62.7830 70.1840 13.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.0295 T22: -0.0197 REMARK 3 T33: -0.0143 T12: 0.0068 REMARK 3 T13: -0.0020 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.5201 L22: 0.7331 REMARK 3 L33: 0.4153 L12: 0.2193 REMARK 3 L13: 0.1056 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.0038 S13: 0.0376 REMARK 3 S21: 0.0412 S22: -0.0129 S23: 0.0191 REMARK 3 S31: -0.0405 S32: 0.0024 S33: 0.0075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 57.8770 64.2720 22.2990 REMARK 3 T TENSOR REMARK 3 T11: -0.0159 T22: -0.0199 REMARK 3 T33: -0.0366 T12: -0.0030 REMARK 3 T13: 0.0135 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6119 L22: 0.7550 REMARK 3 L33: 0.2175 L12: 0.2649 REMARK 3 L13: 0.0361 L23: -0.0333 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0996 S13: 0.0201 REMARK 3 S21: 0.1478 S22: -0.0393 S23: 0.0722 REMARK 3 S31: -0.0060 S32: 0.0016 S33: -0.0129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. ACETATE AND PEG WERE MODELED BASED ON CRYSTALLIZATION REMARK 3 CONDITIONS. REMARK 3 5. BASED ON THE ELECTRON DENSITY, CYSTEINE A56 APPEARS TO BE REMARK 3 OXIDIZED REMARK 3 AND IS MODELED AS S-SULFINOCYSTEINE. REMARK 3 6. RESIDUES 1-3 OF CHAIN A, 1-4 OF CHAIN B, AND A186 ARE DISORDERED REMARK 3 AND WERE NOT MODELED. REMARK 4 REMARK 4 2OPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97894, 0.97870 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M (NH4)2SO4, 25.0% PEG REMARK 280 4000, 0.1M ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.62000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.62000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 186 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 GLU A 158 CD OE1 OE2 REMARK 470 ARG A 185 CA C O CB CG CD NE REMARK 470 ARG A 185 CZ NH1 NH2 REMARK 470 GLN B 21 CD OE1 NE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG B 185 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 -93.69 -144.18 REMARK 500 ASP A 70 -149.98 -154.14 REMARK 500 LEU A 76 14.86 80.36 REMARK 500 LYS B 50 -83.02 -143.44 REMARK 500 ASP B 70 -143.70 -153.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 187 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 172 O REMARK 620 2 VAL A 173 O 89.6 REMARK 620 3 LYS A 175 O 79.3 94.3 REMARK 620 4 THR B 172 O 104.7 86.7 175.8 REMARK 620 5 VAL B 173 O 85.8 173.5 89.3 90.1 REMARK 620 6 LYS B 175 O 173.3 89.0 94.3 81.7 96.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 189 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 371567 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. BASED ON THE ELECTRON DENSITY, CYSTEINE A56 REMARK 999 APPEARS TO BE OXIDIZED AND IS MODELED AS REMARK 999 S-SULFINOCYSTEINE. REMARK 999 2. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH REMARK 999 TEV PROTEASE LEAVING ONLY A GLYCINE, FOLLOWED BY REMARK 999 THE TARGET SEQUENCE. DBREF 2OPL A 1 186 UNP Q749F5 Q749F5_GEOSL 1 186 DBREF 2OPL B 1 186 UNP Q749F5 Q749F5_GEOSL 1 186 SEQADV 2OPL GLY A 0 UNP Q749F5 EXPRESSION TAG SEQADV 2OPL MSE A 1 UNP Q749F5 MET 1 MODIFIED RESIDUE SEQADV 2OPL MSE A 16 UNP Q749F5 MET 16 MODIFIED RESIDUE SEQADV 2OPL MSE A 40 UNP Q749F5 MET 40 MODIFIED RESIDUE SEQADV 2OPL CSD A 56 UNP Q749F5 CYS 56 SEE REMARK 999 SEQADV 2OPL MSE A 65 UNP Q749F5 MET 65 MODIFIED RESIDUE SEQADV 2OPL MSE A 162 UNP Q749F5 MET 162 MODIFIED RESIDUE SEQADV 2OPL GLY B 0 UNP Q749F5 EXPRESSION TAG SEQADV 2OPL MSE B 1 UNP Q749F5 MET 1 MODIFIED RESIDUE SEQADV 2OPL MSE B 16 UNP Q749F5 MET 16 MODIFIED RESIDUE SEQADV 2OPL MSE B 40 UNP Q749F5 MET 40 MODIFIED RESIDUE SEQADV 2OPL MSE B 65 UNP Q749F5 MET 65 MODIFIED RESIDUE SEQADV 2OPL MSE B 162 UNP Q749F5 MET 162 MODIFIED RESIDUE SEQRES 1 A 187 GLY MSE SER GLN THR THR VAL VAL ASN GLY VAL ASN VAL SEQRES 2 A 187 ASP GLN LEU MSE ALA THR ILE GLU GLN ILE LYS ALA LYS SEQRES 3 A 187 PRO GLU ILE ALA GLN PHE LYS PHE ARG ALA THR ASN GLN SEQRES 4 A 187 TRP MSE GLY GLY THR HIS ASN GLN ALA THR ILE LYS ASP SEQRES 5 A 187 PHE TYR GLY ALA CSD ALA GLU ASP ASP THR ARG LYS PRO SEQRES 6 A 187 MSE VAL PHE ASP LEU ASP GLU PRO PRO VAL LEU LEU GLY SEQRES 7 A 187 GLU ASN ARG GLY ALA ASN PRO VAL GLU TYR LEU LEU VAL SEQRES 8 A 187 ALA LEU SER GLY CYS LEU THR THR SER LEU VAL ALA HIS SEQRES 9 A 187 ALA ALA ALA ARG GLY ILE ALA LEU ARG GLY VAL LYS SER SEQRES 10 A 187 ARG TYR GLU GLY ASP ILE ASP LEU ARG GLY PHE LEU GLY SEQRES 11 A 187 LEU SER GLU GLU VAL PRO VAL GLY TYR ARG GLU ILE ARG SEQRES 12 A 187 VAL PHE PHE SER ILE ASP ALA ASP LEU THR ASP GLY GLN SEQRES 13 A 187 LYS GLU GLU LEU ILE ARG MSE ALA GLN LYS TYR SER PRO SEQRES 14 A 187 VAL TYR ASN THR VAL ALA LYS PRO VAL PRO VAL ALA VAL SEQRES 15 A 187 LEU LEU ASP ARG GLY SEQRES 1 B 187 GLY MSE SER GLN THR THR VAL VAL ASN GLY VAL ASN VAL SEQRES 2 B 187 ASP GLN LEU MSE ALA THR ILE GLU GLN ILE LYS ALA LYS SEQRES 3 B 187 PRO GLU ILE ALA GLN PHE LYS PHE ARG ALA THR ASN GLN SEQRES 4 B 187 TRP MSE GLY GLY THR HIS ASN GLN ALA THR ILE LYS ASP SEQRES 5 B 187 PHE TYR GLY ALA CYS ALA GLU ASP ASP THR ARG LYS PRO SEQRES 6 B 187 MSE VAL PHE ASP LEU ASP GLU PRO PRO VAL LEU LEU GLY SEQRES 7 B 187 GLU ASN ARG GLY ALA ASN PRO VAL GLU TYR LEU LEU VAL SEQRES 8 B 187 ALA LEU SER GLY CYS LEU THR THR SER LEU VAL ALA HIS SEQRES 9 B 187 ALA ALA ALA ARG GLY ILE ALA LEU ARG GLY VAL LYS SER SEQRES 10 B 187 ARG TYR GLU GLY ASP ILE ASP LEU ARG GLY PHE LEU GLY SEQRES 11 B 187 LEU SER GLU GLU VAL PRO VAL GLY TYR ARG GLU ILE ARG SEQRES 12 B 187 VAL PHE PHE SER ILE ASP ALA ASP LEU THR ASP GLY GLN SEQRES 13 B 187 LYS GLU GLU LEU ILE ARG MSE ALA GLN LYS TYR SER PRO SEQRES 14 B 187 VAL TYR ASN THR VAL ALA LYS PRO VAL PRO VAL ALA VAL SEQRES 15 B 187 LEU LEU ASP ARG GLY MODRES 2OPL MSE A 16 MET SELENOMETHIONINE MODRES 2OPL MSE A 40 MET SELENOMETHIONINE MODRES 2OPL CSD A 56 CYS 3-SULFINOALANINE MODRES 2OPL MSE A 65 MET SELENOMETHIONINE MODRES 2OPL MSE A 162 MET SELENOMETHIONINE MODRES 2OPL MSE B 16 MET SELENOMETHIONINE MODRES 2OPL MSE B 40 MET SELENOMETHIONINE MODRES 2OPL MSE B 65 MET SELENOMETHIONINE MODRES 2OPL MSE B 162 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 40 13 HET CSD A 56 8 HET MSE A 65 13 HET MSE A 162 18 HET MSE B 16 13 HET MSE B 40 13 HET MSE B 65 18 HET MSE B 162 13 HET NA A 187 1 HET ACT A 188 4 HET P6G A 189 19 HET SO4 B 187 5 HETNAM MSE SELENOMETHIONINE HETNAM CSD 3-SULFINOALANINE HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 CSD C3 H7 N O4 S FORMUL 3 NA NA 1+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 P6G C12 H26 O7 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *496(H2 O) HELIX 1 1 VAL A 12 LYS A 25 1 14 HELIX 2 2 PRO A 26 ILE A 28 5 3 HELIX 3 3 PRO A 72 LEU A 76 5 5 HELIX 4 4 ASN A 83 ARG A 107 1 25 HELIX 5 5 THR A 152 SER A 167 1 16 HELIX 6 6 SER A 167 LYS A 175 1 9 HELIX 7 7 VAL B 12 LYS B 25 1 14 HELIX 8 8 PRO B 26 ILE B 28 5 3 HELIX 9 9 PRO B 72 LEU B 76 5 5 HELIX 10 10 ASN B 83 ARG B 107 1 25 HELIX 11 11 THR B 152 SER B 167 1 16 HELIX 12 12 SER B 167 LYS B 175 1 9 SHEET 1 A 2 VAL A 6 VAL A 7 0 SHEET 2 A 2 VAL A 10 ASN A 11 -1 O VAL A 10 N VAL A 7 SHEET 1 B 5 ALA A 57 ASP A 59 0 SHEET 2 B 5 PHE A 52 GLY A 54 -1 N PHE A 52 O ASP A 59 SHEET 3 B 5 GLN A 30 TRP A 39 -1 N LYS A 32 O TYR A 53 SHEET 4 B 5 ASN A 45 ILE A 49 -1 O THR A 48 N THR A 36 SHEET 5 B 5 MSE A 65 LEU A 69 -1 O LEU A 69 N ASN A 45 SHEET 1 C 6 ALA A 57 ASP A 59 0 SHEET 2 C 6 PHE A 52 GLY A 54 -1 N PHE A 52 O ASP A 59 SHEET 3 C 6 GLN A 30 TRP A 39 -1 N LYS A 32 O TYR A 53 SHEET 4 C 6 GLY B 113 ASP B 123 -1 O ILE B 122 N PHE A 31 SHEET 5 C 6 GLU B 140 ASP B 148 -1 O ARG B 142 N GLU B 119 SHEET 6 C 6 VAL A 179 LEU A 183 1 N ALA A 180 O VAL B 143 SHEET 1 D 5 ALA B 57 ASP B 59 0 SHEET 2 D 5 PHE B 52 GLY B 54 -1 N PHE B 52 O ASP B 59 SHEET 3 D 5 GLN B 30 GLY B 41 -1 N LYS B 32 O TYR B 53 SHEET 4 D 5 HIS B 44 ILE B 49 -1 O THR B 48 N THR B 36 SHEET 5 D 5 MSE B 65 LEU B 69 -1 O LEU B 69 N ASN B 45 SHEET 1 E 6 ALA B 57 ASP B 59 0 SHEET 2 E 6 PHE B 52 GLY B 54 -1 N PHE B 52 O ASP B 59 SHEET 3 E 6 GLN B 30 GLY B 41 -1 N LYS B 32 O TYR B 53 SHEET 4 E 6 GLY A 113 ASP A 123 -1 N ILE A 122 O PHE B 31 SHEET 5 E 6 GLU A 140 ASP A 148 -1 O ARG A 142 N GLU A 119 SHEET 6 E 6 VAL B 179 LEU B 183 1 O ALA B 180 N VAL A 143 SHEET 1 F 2 VAL B 6 VAL B 7 0 SHEET 2 F 2 VAL B 10 ASN B 11 -1 O VAL B 10 N VAL B 7 LINK C LEU A 15 N MSE A 16 1555 1555 1.32 LINK C MSE A 16 N ALA A 17 1555 1555 1.33 LINK C TRP A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLY A 41 1555 1555 1.33 LINK C ALA A 55 N CSD A 56 1555 1555 1.33 LINK C CSD A 56 N ALA A 57 1555 1555 1.32 LINK C PRO A 64 N MSE A 65 1555 1555 1.34 LINK C MSE A 65 N VAL A 66 1555 1555 1.33 LINK C ARG A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N ALA A 163 1555 1555 1.33 LINK C LEU B 15 N MSE B 16 1555 1555 1.33 LINK C MSE B 16 N ALA B 17 1555 1555 1.33 LINK C TRP B 39 N MSE B 40 1555 1555 1.34 LINK C MSE B 40 N GLY B 41 1555 1555 1.33 LINK C PRO B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N VAL B 66 1555 1555 1.33 LINK C ARG B 161 N MSE B 162 1555 1555 1.33 LINK C MSE B 162 N ALA B 163 1555 1555 1.33 LINK O THR A 172 NA NA A 187 1555 1555 2.41 LINK O VAL A 173 NA NA A 187 1555 1555 2.47 LINK O LYS A 175 NA NA A 187 1555 1555 2.36 LINK NA NA A 187 O THR B 172 1555 1555 2.45 LINK NA NA A 187 O VAL B 173 1555 1555 2.54 LINK NA NA A 187 O LYS B 175 1555 1555 2.30 SITE 1 AC1 6 THR A 172 VAL A 173 LYS A 175 THR B 172 SITE 2 AC1 6 VAL B 173 LYS B 175 SITE 1 AC2 5 VAL A 6 ASN A 11 LYS A 32 ARG A 34 SITE 2 AC2 5 GLU A 58 SITE 1 AC3 4 ARG B 161 MSE B 162 LYS B 165 TYR B 166 SITE 1 AC4 7 ARG A 112 GLY A 113 ASP A 148 HOH A 284 SITE 2 AC4 7 HOH A 439 HOH A 440 TRP B 39 CRYST1 47.240 83.010 95.450 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010480 0.00000