data_2OQQ # _entry.id 2OQQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OQQ pdb_00002oqq 10.2210/pdb2oqq/pdb RCSB RCSB041470 ? ? WWPDB D_1000041470 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-20 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-01-27 6 'Structure model' 1 5 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation 3 5 'Structure model' citation_author 4 5 'Structure model' struct_ref_seq_dif 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_citation.country' 2 5 'Structure model' '_citation.journal_abbrev' 3 5 'Structure model' '_citation.journal_id_ASTM' 4 5 'Structure model' '_citation.journal_id_CSD' 5 5 'Structure model' '_citation.journal_id_ISSN' 6 5 'Structure model' '_citation.journal_volume' 7 5 'Structure model' '_citation.page_first' 8 5 'Structure model' '_citation.page_last' 9 5 'Structure model' '_citation.pdbx_database_id_DOI' 10 5 'Structure model' '_citation.pdbx_database_id_PubMed' 11 5 'Structure model' '_citation.title' 12 5 'Structure model' '_citation.year' 13 5 'Structure model' '_citation_author.name' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 6 'Structure model' '_database_2.pdbx_DOI' 16 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 2OQQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-02-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoon, M.-K.' 1 'Kim, H.M.' 2 'Choi, G.' 3 'Lee, J.-O.' 4 'Choi, B.-S.' 5 # _citation.id primary _citation.title 'Structural basis for the conformational integrity of the Arabidopsis thaliana HY5 leucine zipper homodimer.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 12989 _citation.page_last 13002 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17261584 _citation.pdbx_database_id_DOI 10.1074/jbc.M611465200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoon, M.K.' 1 ? primary 'Kim, H.M.' 2 ? primary 'Choi, G.' 3 ? primary 'Lee, J.O.' 4 ? primary 'Choi, B.S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription factor HY5' 4964.506 2 ? ? 'Hy5 leucine zipper' ? 2 water nat water 18.015 102 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein LONG HYPOCOL5, AtbZIP56' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN _entity_poly.pdbx_seq_one_letter_code_can GSAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 TYR n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 LEU n 1 9 GLU n 1 10 ASN n 1 11 ARG n 1 12 VAL n 1 13 LYS n 1 14 ASP n 1 15 LEU n 1 16 GLU n 1 17 ASN n 1 18 LYS n 1 19 ASN n 1 20 SER n 1 21 GLU n 1 22 LEU n 1 23 GLU n 1 24 GLU n 1 25 ARG n 1 26 LEU n 1 27 SER n 1 28 THR n 1 29 LEU n 1 30 GLN n 1 31 ASN n 1 32 GLU n 1 33 ASN n 1 34 GLN n 1 35 MET n 1 36 LEU n 1 37 ARG n 1 38 HIS n 1 39 ILE n 1 40 LEU n 1 41 LYS n 1 42 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'thale cress' _entity_src_gen.gene_src_genus Arabidopsis _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX4T3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ASN 42 42 42 ASN ASN A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 TYR 4 4 4 TYR TYR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 ASN 19 19 19 ASN ASN B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 GLU 23 23 23 GLU GLU B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 ARG 25 25 25 ARG ARG B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 THR 28 28 28 THR THR B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 GLN 30 30 30 GLN GLN B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 ASN 33 33 33 ASN ASN B . n B 1 34 GLN 34 34 34 GLN GLN B . n B 1 35 MET 35 35 35 MET MET B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 ARG 37 37 37 ARG ARG B . n B 1 38 HIS 38 38 38 HIS HIS B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 ASN 42 42 42 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 43 1 HOH HOH A . C 2 HOH 2 44 2 HOH HOH A . C 2 HOH 3 45 4 HOH HOH A . C 2 HOH 4 46 6 HOH HOH A . C 2 HOH 5 47 7 HOH HOH A . C 2 HOH 6 48 10 HOH HOH A . C 2 HOH 7 49 13 HOH HOH A . C 2 HOH 8 50 14 HOH HOH A . C 2 HOH 9 51 15 HOH HOH A . C 2 HOH 10 52 17 HOH HOH A . C 2 HOH 11 53 18 HOH HOH A . C 2 HOH 12 54 19 HOH HOH A . C 2 HOH 13 55 24 HOH HOH A . C 2 HOH 14 56 26 HOH HOH A . C 2 HOH 15 57 29 HOH HOH A . C 2 HOH 16 58 31 HOH HOH A . C 2 HOH 17 59 34 HOH HOH A . C 2 HOH 18 60 35 HOH HOH A . C 2 HOH 19 61 36 HOH HOH A . C 2 HOH 20 62 39 HOH HOH A . C 2 HOH 21 63 40 HOH HOH A . C 2 HOH 22 64 41 HOH HOH A . C 2 HOH 23 65 44 HOH HOH A . C 2 HOH 24 66 45 HOH HOH A . C 2 HOH 25 67 47 HOH HOH A . C 2 HOH 26 68 48 HOH HOH A . C 2 HOH 27 69 49 HOH HOH A . C 2 HOH 28 70 50 HOH HOH A . C 2 HOH 29 71 53 HOH HOH A . C 2 HOH 30 72 54 HOH HOH A . C 2 HOH 31 73 55 HOH HOH A . C 2 HOH 32 74 58 HOH HOH A . C 2 HOH 33 75 61 HOH HOH A . C 2 HOH 34 76 66 HOH HOH A . C 2 HOH 35 77 68 HOH HOH A . C 2 HOH 36 78 72 HOH HOH A . C 2 HOH 37 79 75 HOH HOH A . C 2 HOH 38 80 76 HOH HOH A . C 2 HOH 39 81 79 HOH HOH A . C 2 HOH 40 82 80 HOH HOH A . C 2 HOH 41 83 89 HOH HOH A . C 2 HOH 42 84 90 HOH HOH A . C 2 HOH 43 85 91 HOH HOH A . C 2 HOH 44 86 92 HOH HOH A . C 2 HOH 45 87 97 HOH HOH A . C 2 HOH 46 88 100 HOH HOH A . C 2 HOH 47 89 101 HOH HOH A . D 2 HOH 1 43 3 HOH HOH B . D 2 HOH 2 44 5 HOH HOH B . D 2 HOH 3 45 8 HOH HOH B . D 2 HOH 4 46 9 HOH HOH B . D 2 HOH 5 47 11 HOH HOH B . D 2 HOH 6 48 12 HOH HOH B . D 2 HOH 7 49 16 HOH HOH B . D 2 HOH 8 50 20 HOH HOH B . D 2 HOH 9 51 21 HOH HOH B . D 2 HOH 10 52 22 HOH HOH B . D 2 HOH 11 53 23 HOH HOH B . D 2 HOH 12 54 25 HOH HOH B . D 2 HOH 13 55 27 HOH HOH B . D 2 HOH 14 56 28 HOH HOH B . D 2 HOH 15 57 30 HOH HOH B . D 2 HOH 16 58 32 HOH HOH B . D 2 HOH 17 59 33 HOH HOH B . D 2 HOH 18 60 37 HOH HOH B . D 2 HOH 19 61 38 HOH HOH B . D 2 HOH 20 62 42 HOH HOH B . D 2 HOH 21 63 43 HOH HOH B . D 2 HOH 22 64 46 HOH HOH B . D 2 HOH 23 65 51 HOH HOH B . D 2 HOH 24 66 52 HOH HOH B . D 2 HOH 25 67 56 HOH HOH B . D 2 HOH 26 68 57 HOH HOH B . D 2 HOH 27 69 59 HOH HOH B . D 2 HOH 28 70 60 HOH HOH B . D 2 HOH 29 71 62 HOH HOH B . D 2 HOH 30 72 63 HOH HOH B . D 2 HOH 31 73 64 HOH HOH B . D 2 HOH 32 74 65 HOH HOH B . D 2 HOH 33 75 67 HOH HOH B . D 2 HOH 34 76 69 HOH HOH B . D 2 HOH 35 77 70 HOH HOH B . D 2 HOH 36 78 71 HOH HOH B . D 2 HOH 37 79 73 HOH HOH B . D 2 HOH 38 80 74 HOH HOH B . D 2 HOH 39 81 77 HOH HOH B . D 2 HOH 40 82 78 HOH HOH B . D 2 HOH 41 83 81 HOH HOH B . D 2 HOH 42 84 82 HOH HOH B . D 2 HOH 43 85 83 HOH HOH B . D 2 HOH 44 86 84 HOH HOH B . D 2 HOH 45 87 85 HOH HOH B . D 2 HOH 46 88 86 HOH HOH B . D 2 HOH 47 89 87 HOH HOH B . D 2 HOH 48 90 88 HOH HOH B . D 2 HOH 49 91 93 HOH HOH B . D 2 HOH 50 92 94 HOH HOH B . D 2 HOH 51 93 95 HOH HOH B . D 2 HOH 52 94 96 HOH HOH B . D 2 HOH 53 95 98 HOH HOH B . D 2 HOH 54 96 99 HOH HOH B . D 2 HOH 55 97 102 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 RESOLVE 2.09 25-Apr-2005 package 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 5 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 # _cell.length_a 48.344 _cell.length_b 24.583 _cell.length_c 76.517 _cell.angle_alpha 90.000 _cell.angle_beta 100.030 _cell.angle_gamma 90.000 _cell.entry_id 2OQQ _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 2OQQ _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2OQQ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.1M Bis-Tris pH6.0 0.1M MgCl2 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 296K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.12714 1.0 2 0.97880 1.0 3 0.97895 1.0 4 0.97114 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 6B' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.12714, 0.97880, 0.97895, 0.97114' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 6B # _reflns.entry_id 2OQQ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 6080 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 87.8 _reflns_shell.Rmerge_I_obs 0.392 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 553 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OQQ _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 91.300 _refine.ls_number_reflns_obs 5680 _refine.ls_R_factor_R_work 0.243 _refine.ls_R_factor_R_free 0.296 _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 621 _refine.B_iso_mean 38.094 _refine.solvent_model_param_bsol 47.692 _refine.aniso_B[1][1] 1.784 _refine.aniso_B[2][2] 3.952 _refine.aniso_B[3][3] -5.735 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -4.981 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 694 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 796 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.007 ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? 1.242 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.607 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.550 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.597 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 4.061 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2OQQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 2OQQ _struct.title 'Crystal structure of HY5 leucine zipper homodimer from Arabidopsis thaliana' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OQQ _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'homodimer leucine zipper, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HY5_ARATH _struct_ref.pdbx_db_accession O24646 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN _struct_ref.pdbx_align_begin 111 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OQQ A 3 ? 42 ? O24646 111 ? 150 ? 3 42 2 1 2OQQ B 3 ? 42 ? O24646 111 ? 150 ? 3 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OQQ GLY A 1 ? UNP O24646 ? ? 'cloning artifact' 1 1 1 2OQQ SER A 2 ? UNP O24646 ? ? 'cloning artifact' 2 2 2 2OQQ GLY B 1 ? UNP O24646 ? ? 'cloning artifact' 1 3 2 2OQQ SER B 2 ? UNP O24646 ? ? 'cloning artifact' 2 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2120 ? 1 MORE -17 ? 1 'SSA (A^2)' 6160 ? 2 'ABSA (A^2)' 5360 ? 2 MORE -46 ? 2 'SSA (A^2)' 11180 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -13.3264913296 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 75.3475674315 # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? ASN A 42 ? SER A 2 ASN A 42 1 ? 41 HELX_P HELX_P2 2 GLY B 1 ? ASN B 42 ? GLY B 1 ASN B 42 1 ? 42 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 5 ? ? O A HOH 46 ? ? 2.06 2 1 OD1 A ASN 19 ? ? O A HOH 67 ? ? 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 66 ? ? 1_555 O A HOH 66 ? ? 2_655 1.73 2 1 CG A LYS 41 ? ? 1_555 CG A LYS 41 ? ? 2_556 1.96 3 1 CA A GLY 1 ? ? 1_555 CA A GLY 1 ? ? 2_655 1.99 # _pdbx_phasing_dm.entry_id 2OQQ _pdbx_phasing_dm.fom_acentric 0.780 _pdbx_phasing_dm.fom_centric 0.740 _pdbx_phasing_dm.fom 0.770 _pdbx_phasing_dm.reflns_acentric 4648 _pdbx_phasing_dm.reflns_centric 542 _pdbx_phasing_dm.reflns 5190 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.000 37.674 ? ? 0.900 0.830 0.880 178 71 249 3.800 6.000 ? ? 0.910 0.900 0.910 607 120 727 3.000 3.800 ? ? 0.880 0.810 0.870 773 94 867 2.600 3.000 ? ? 0.810 0.750 0.810 810 77 887 2.300 2.600 ? ? 0.730 0.580 0.720 1421 115 1536 2.100 2.300 ? ? 0.600 0.550 0.600 859 65 924 # _phasing.method SIRAS # _phasing_MIR.entry_id 2OQQ _phasing_MIR.d_res_high 2.00 _phasing_MIR.d_res_low 20.00 _phasing_MIR.reflns 5190 _phasing_MIR.FOM 0.595 _phasing_MIR.reflns_centric 542 _phasing_MIR.FOM_centric 0.571 _phasing_MIR.reflns_acentric 4648 _phasing_MIR.FOM_acentric 0.598 # loop_ _phasing_MIR_der.id _phasing_MIR_der.d_res_high _phasing_MIR_der.d_res_low _phasing_MIR_der.reflns_acentric _phasing_MIR_der.pdbx_loc_acentric _phasing_MIR_der.power_acentric _phasing_MIR_der.R_cullis_acentric _phasing_MIR_der.reflns_centric _phasing_MIR_der.pdbx_loc_centric _phasing_MIR_der.power_centric _phasing_MIR_der.R_cullis_centric _phasing_MIR_der.der_set_id _phasing_MIR_der.native_set_id edge 2.00 20.00 4648 0.000 0.000 1.580 542 0.000 0.000 1.000 1 . peak 2.00 20.00 4627 5.400 0.560 0.930 516 6.200 0.600 0.890 1 . remote 2.00 20.00 4632 4.600 1.410 0.710 502 5.700 1.400 0.580 1 . native 3.00 20.00 755 11.900 0.560 0.930 139 14.600 0.410 1.000 1 . # loop_ _phasing_MIR_der_shell.d_res_high _phasing_MIR_der_shell.d_res_low _phasing_MIR_der_shell.pdbx_reflns_acentric _phasing_MIR_der_shell.pdbx_loc_acentric _phasing_MIR_der_shell.pdbx_power_acentric _phasing_MIR_der_shell.pdbx_R_cullis_acentric _phasing_MIR_der_shell.pdbx_reflns_centric _phasing_MIR_der_shell.pdbx_loc_centric _phasing_MIR_der_shell.pdbx_power_centric _phasing_MIR_der_shell.pdbx_R_cullis_centric _phasing_MIR_der_shell.der_id 9.41 20.00 38 0.100 0.000 1.110 30 0.000 0.000 1.000 edge 6.15 9.41 125 0.100 0.000 1.960 39 0.000 0.000 1.000 edge 4.57 6.15 258 0.100 0.000 1.650 63 0.000 0.000 1.000 edge 3.64 4.57 446 0.100 0.000 1.060 69 0.100 0.000 1.000 edge 3.02 3.64 664 0.000 0.000 1.320 80 0.000 0.000 1.000 edge 2.58 3.02 986 0.000 0.000 1.760 96 0.000 0.000 1.000 edge 2.25 2.58 1279 0.000 0.000 2.170 101 0.000 0.000 1.000 edge 2.00 2.25 852 0.000 0.000 3.190 64 0.000 0.000 1.000 edge 9.41 20.00 38 8.200 0.870 0.950 29 5.400 1.160 0.720 peak 6.15 9.41 124 5.900 1.060 0.900 39 7.200 0.510 0.900 peak 4.57 6.15 257 6.700 0.810 0.880 62 6.300 0.970 0.720 peak 3.64 4.57 445 7.400 0.630 0.970 65 8.200 0.620 0.940 peak 3.02 3.64 662 6.400 0.580 0.920 76 6.000 0.640 1.070 peak 2.58 3.02 984 5.200 0.540 0.930 93 6.300 0.460 0.860 peak 2.25 2.58 1273 4.500 0.480 0.930 96 4.600 0.460 0.970 peak 2.00 2.25 844 4.500 0.380 0.960 56 5.900 0.290 0.940 peak 9.41 20.00 38 5.800 2.590 0.490 28 5.900 2.400 0.380 remote 6.15 9.41 125 4.800 2.820 0.540 36 5.200 1.480 0.700 remote 4.57 6.15 258 4.800 2.460 0.600 62 4.900 2.600 0.450 remote 3.64 4.57 446 4.800 2.110 0.590 68 6.000 1.820 0.480 remote 3.02 3.64 663 4.500 1.800 0.620 78 5.800 1.420 0.530 remote 2.58 3.02 984 4.500 1.330 0.720 85 4.900 1.220 0.710 remote 2.25 2.58 1271 4.400 1.050 0.770 89 6.000 0.740 0.710 remote 2.00 2.25 847 4.800 0.760 0.880 56 6.600 0.590 0.770 remote 9.41 20.00 21 11.400 1.070 0.730 14 14.500 0.530 1.170 native 6.15 9.41 60 8.900 0.960 0.820 21 12.600 0.380 0.950 native 4.57 6.15 130 8.700 0.920 0.880 29 12.400 0.670 1.000 native 3.64 4.57 211 13.800 0.500 0.950 32 18.200 0.340 0.890 native 3.02 3.64 318 12.800 0.430 0.950 42 14.700 0.280 1.120 native 2.58 3.02 15 8.600 0.500 0.960 1 4.700 1.040 0.510 native 2.25 2.58 0 0.000 0.000 0.000 0 0.000 0.000 0.000 native 2.00 2.25 0 0.000 0.000 0.000 0 0.000 0.000 0.000 native # loop_ _phasing_MIR_der_site.id _phasing_MIR_der_site.atom_type_symbol _phasing_MIR_der_site.fract_x _phasing_MIR_der_site.fract_y _phasing_MIR_der_site.fract_z _phasing_MIR_der_site.B_iso _phasing_MIR_der_site.occupancy _phasing_MIR_der_site.der_id _phasing_MIR_der_site.details 1 Au 0.498 0.064 0.466 25.000 0.000 edge ? 2 Au 0.729 0.054 0.468 25.000 0.000 edge ? 3 Au 0.498 0.063 0.466 25.000 0.032 peak ? 4 Au 0.728 0.054 0.468 25.000 0.028 peak ? 5 Au 0.497 0.062 0.466 25.000 0.064 remote ? 6 Au 0.729 0.053 0.468 25.000 0.066 remote ? 7 Au 0.497 0.105 0.466 25.000 0.045 native ? 8 Au 0.739 0.050 0.468 25.000 0.034 native ? # loop_ _phasing_MIR_shell.d_res_high _phasing_MIR_shell.d_res_low _phasing_MIR_shell.reflns _phasing_MIR_shell.FOM _phasing_MIR_shell.reflns_centric _phasing_MIR_shell.FOM_centric _phasing_MIR_shell.reflns_acentric _phasing_MIR_shell.FOM_acentric 9.41 20.00 68 0.652 30 0.604 38 0.690 6.15 9.41 164 0.737 39 0.623 125 0.773 4.57 6.15 321 0.728 63 0.738 258 0.725 3.64 4.57 515 0.704 69 0.658 446 0.711 3.02 3.64 744 0.703 80 0.668 664 0.707 2.58 3.02 1082 0.624 96 0.536 986 0.633 2.25 2.58 1380 0.538 101 0.438 1279 0.545 2.00 2.25 916 0.424 64 0.409 852 0.425 # _phasing_set.id 1 _phasing_set.pdbx_d_res_high . _phasing_set.pdbx_d_res_low . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 SER N N N N 236 SER CA C N S 237 SER C C N N 238 SER O O N N 239 SER CB C N N 240 SER OG O N N 241 SER OXT O N N 242 SER H H N N 243 SER H2 H N N 244 SER HA H N N 245 SER HB2 H N N 246 SER HB3 H N N 247 SER HG H N N 248 SER HXT H N N 249 THR N N N N 250 THR CA C N S 251 THR C C N N 252 THR O O N N 253 THR CB C N R 254 THR OG1 O N N 255 THR CG2 C N N 256 THR OXT O N N 257 THR H H N N 258 THR H2 H N N 259 THR HA H N N 260 THR HB H N N 261 THR HG1 H N N 262 THR HG21 H N N 263 THR HG22 H N N 264 THR HG23 H N N 265 THR HXT H N N 266 TYR N N N N 267 TYR CA C N S 268 TYR C C N N 269 TYR O O N N 270 TYR CB C N N 271 TYR CG C Y N 272 TYR CD1 C Y N 273 TYR CD2 C Y N 274 TYR CE1 C Y N 275 TYR CE2 C Y N 276 TYR CZ C Y N 277 TYR OH O N N 278 TYR OXT O N N 279 TYR H H N N 280 TYR H2 H N N 281 TYR HA H N N 282 TYR HB2 H N N 283 TYR HB3 H N N 284 TYR HD1 H N N 285 TYR HD2 H N N 286 TYR HE1 H N N 287 TYR HE2 H N N 288 TYR HH H N N 289 TYR HXT H N N 290 VAL N N N N 291 VAL CA C N S 292 VAL C C N N 293 VAL O O N N 294 VAL CB C N N 295 VAL CG1 C N N 296 VAL CG2 C N N 297 VAL OXT O N N 298 VAL H H N N 299 VAL H2 H N N 300 VAL HA H N N 301 VAL HB H N N 302 VAL HG11 H N N 303 VAL HG12 H N N 304 VAL HG13 H N N 305 VAL HG21 H N N 306 VAL HG22 H N N 307 VAL HG23 H N N 308 VAL HXT H N N 309 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 SER N CA sing N N 224 SER N H sing N N 225 SER N H2 sing N N 226 SER CA C sing N N 227 SER CA CB sing N N 228 SER CA HA sing N N 229 SER C O doub N N 230 SER C OXT sing N N 231 SER CB OG sing N N 232 SER CB HB2 sing N N 233 SER CB HB3 sing N N 234 SER OG HG sing N N 235 SER OXT HXT sing N N 236 THR N CA sing N N 237 THR N H sing N N 238 THR N H2 sing N N 239 THR CA C sing N N 240 THR CA CB sing N N 241 THR CA HA sing N N 242 THR C O doub N N 243 THR C OXT sing N N 244 THR CB OG1 sing N N 245 THR CB CG2 sing N N 246 THR CB HB sing N N 247 THR OG1 HG1 sing N N 248 THR CG2 HG21 sing N N 249 THR CG2 HG22 sing N N 250 THR CG2 HG23 sing N N 251 THR OXT HXT sing N N 252 TYR N CA sing N N 253 TYR N H sing N N 254 TYR N H2 sing N N 255 TYR CA C sing N N 256 TYR CA CB sing N N 257 TYR CA HA sing N N 258 TYR C O doub N N 259 TYR C OXT sing N N 260 TYR CB CG sing N N 261 TYR CB HB2 sing N N 262 TYR CB HB3 sing N N 263 TYR CG CD1 doub Y N 264 TYR CG CD2 sing Y N 265 TYR CD1 CE1 sing Y N 266 TYR CD1 HD1 sing N N 267 TYR CD2 CE2 doub Y N 268 TYR CD2 HD2 sing N N 269 TYR CE1 CZ doub Y N 270 TYR CE1 HE1 sing N N 271 TYR CE2 CZ sing Y N 272 TYR CE2 HE2 sing N N 273 TYR CZ OH sing N N 274 TYR OH HH sing N N 275 TYR OXT HXT sing N N 276 VAL N CA sing N N 277 VAL N H sing N N 278 VAL N H2 sing N N 279 VAL CA C sing N N 280 VAL CA CB sing N N 281 VAL CA HA sing N N 282 VAL C O doub N N 283 VAL C OXT sing N N 284 VAL CB CG1 sing N N 285 VAL CB CG2 sing N N 286 VAL CB HB sing N N 287 VAL CG1 HG11 sing N N 288 VAL CG1 HG12 sing N N 289 VAL CG1 HG13 sing N N 290 VAL CG2 HG21 sing N N 291 VAL CG2 HG22 sing N N 292 VAL CG2 HG23 sing N N 293 VAL OXT HXT sing N N 294 # _atom_sites.entry_id 2OQQ _atom_sites.fract_transf_matrix[1][1] 0.020685 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003659 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040679 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013272 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_