HEADER CELL ADHESION 11-FEB-07 2OUH TITLE CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN IN COMPLEX TITLE 2 WITH FRACTIONATED HEPARIN DP10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOSPONDIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THBS1, TSP, TSP1; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DROSOPHILA S2 CELL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS A KEYWDS TSP-1, TSPN-1, HBD, FRACTIONATED HEPARIN, DP10, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,A.JOACHIMIAK,J.WANG,J.LAWLER REVDAT 4 30-AUG-23 2OUH 1 REMARK SEQADV REVDAT 3 24-FEB-09 2OUH 1 VERSN REVDAT 2 19-FEB-08 2OUH 1 JRNL REVDAT 1 08-JAN-08 2OUH 0 JRNL AUTH K.TAN,M.DUQUETTE,J.H.LIU,K.SHANMUGASUNDARAM,A.JOACHIMIAK, JRNL AUTH 2 J.T.GALLAGHER,A.C.RIGBY,J.H.WANG,J.LAWLER JRNL TITL HEPARIN-INDUCED CIS- AND TRANS-DIMERIZATION MODES OF THE JRNL TITL 2 THROMBOSPONDIN-1 N-TERMINAL DOMAIN. JRNL REF J.BIOL.CHEM. V. 283 3932 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18065761 JRNL DOI 10.1074/JBC.M705203200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 14228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 57 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.629 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FRACTIONATED HEPARIN DP10 IS CHEMICALLY REMARK 3 HETEROGENEOUS AND PARTIALLY DISORDERED IN THE STRUCTURE. AUTHORS REMARK 3 WERE ABLE TO IDENTIFY ONLY SOME SO4 GROUPS FROM THE HEPARIN BUT REMARK 3 NOT THE HEPARIN BACKBONE DUE TO ITS POSSIBLE MOBILITY. INSTEAD, REMARK 3 THERE ARE SEVERAL WATER MOLECULES BEING POSITIONED INTO SOME REMARK 3 UNCHARACTERIZED DENSITIES NEAR HEPARIN BINDING SITES. THESE REMARK 3 DENSITIES ARE LIKELY FROM PARTIALLY DISORDERED HEPARIN DP10, NOT REMARK 3 NECESSARILY FROM WATER MOLECULES. INCLUDING OF THESE WATERS IN REMARK 3 THE MODEL WAS JUST FOR THE REFINEMENT PURPOSES. REMARK 4 REMARK 4 2OUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Z78 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG1500, 0.08M SODIUM ACETATE, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.15800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.88950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.53450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 120.88950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.15800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.53450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TSPN-1 IS A MONOMER BY ITSELF. IN PRESENCE OF DP10, IT REMARK 300 FORMS A HEPARIN-LINKED DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -3 REMARK 465 SER A -2 REMARK 465 PRO A -1 REMARK 465 TRP A 0 REMARK 465 ASN A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 ASN A 10 REMARK 465 SER A 11 REMARK 465 SER A 215 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 THR A 218 REMARK 465 SER A 219 REMARK 465 VAL A 220 REMARK 465 LEU A 221 REMARK 465 LEU A 222 REMARK 465 THR A 223 REMARK 465 LEU A 224 REMARK 465 ASP A 225 REMARK 465 ASN A 226 REMARK 465 ASN A 227 REMARK 465 VAL A 228 REMARK 465 VAL A 229 REMARK 465 ASN A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 SER A 233 REMARK 465 PRO A 234 REMARK 465 ALA A 235 REMARK 465 ILE A 236 REMARK 465 ARG A 237 REMARK 465 THR A 238 REMARK 465 ASN A 239 REMARK 465 THR A 240 REMARK 465 GLY A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 ARG B -3 REMARK 465 SER B -2 REMARK 465 PRO B -1 REMARK 465 TRP B 0 REMARK 465 ASN B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 SER B 215 REMARK 465 SER B 216 REMARK 465 SER B 217 REMARK 465 THR B 218 REMARK 465 SER B 219 REMARK 465 VAL B 220 REMARK 465 LEU B 221 REMARK 465 LEU B 222 REMARK 465 THR B 223 REMARK 465 LEU B 224 REMARK 465 ASP B 225 REMARK 465 ASN B 226 REMARK 465 ASN B 227 REMARK 465 VAL B 228 REMARK 465 VAL B 229 REMARK 465 ASN B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 SER B 233 REMARK 465 PRO B 234 REMARK 465 ALA B 235 REMARK 465 ILE B 236 REMARK 465 ARG B 237 REMARK 465 THR B 238 REMARK 465 ASN B 239 REMARK 465 THR B 240 REMARK 465 GLY B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 87 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 THR A 132 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 52.60 -140.72 REMARK 500 LYS A 24 131.31 -173.00 REMARK 500 SER A 26 -137.33 -126.65 REMARK 500 VAL A 31 -166.96 -129.46 REMARK 500 PRO A 53 154.89 -49.01 REMARK 500 ALA A 74 142.24 -171.08 REMARK 500 HIS A 94 96.48 -12.46 REMARK 500 SER A 95 -47.18 -159.69 REMARK 500 GLN A 117 73.16 48.78 REMARK 500 ALA A 131 42.19 -77.82 REMARK 500 GLU A 144 -126.75 58.25 REMARK 500 ASP A 152 -115.23 52.53 REMARK 500 LEU A 173 -49.13 -26.53 REMARK 500 VAL A 186 -10.78 63.80 REMARK 500 ASN A 187 15.26 -158.99 REMARK 500 ASN A 211 0.60 -58.22 REMARK 500 THR B 19 -136.91 -102.75 REMARK 500 ARG B 23 -17.82 72.97 REMARK 500 LEU B 30 104.33 -55.52 REMARK 500 VAL B 31 -160.89 -118.20 REMARK 500 ALA B 74 139.12 -171.56 REMARK 500 ASP B 93 20.35 -76.95 REMARK 500 HIS B 94 16.38 46.28 REMARK 500 GLU B 144 -115.25 62.30 REMARK 500 ASP B 152 -100.10 71.43 REMARK 500 LYS B 155 132.10 -21.05 REMARK 500 ASP B 172 30.50 71.15 REMARK 500 ALA B 174 7.19 -67.78 REMARK 500 ASN B 211 16.23 -67.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z78 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN REMARK 900 RELATED ID: 1ZA4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN IN REMARK 900 COMPLEX WITH ARIXTRA REMARK 900 RELATED ID: 2OUJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 N-TERMINAL DOMAIN IN REMARK 900 COMPLEX WITH FRACTIONATED HEPARIN DP8 DBREF 2OUH A 1 239 UNP P07996 TSP1_HUMAN 19 257 DBREF 2OUH B 1 239 UNP P07996 TSP1_HUMAN 19 257 SEQADV 2OUH ARG A -3 UNP P07996 EXPRESSION TAG SEQADV 2OUH SER A -2 UNP P07996 EXPRESSION TAG SEQADV 2OUH PRO A -1 UNP P07996 EXPRESSION TAG SEQADV 2OUH TRP A 0 UNP P07996 EXPRESSION TAG SEQADV 2OUH THR A 66 UNP P07996 ALA 84 VARIANT SEQADV 2OUH THR A 240 UNP P07996 EXPRESSION TAG SEQADV 2OUH GLY A 241 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 242 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 243 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 244 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 245 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 246 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS A 247 UNP P07996 EXPRESSION TAG SEQADV 2OUH ARG B -3 UNP P07996 EXPRESSION TAG SEQADV 2OUH SER B -2 UNP P07996 EXPRESSION TAG SEQADV 2OUH PRO B -1 UNP P07996 EXPRESSION TAG SEQADV 2OUH TRP B 0 UNP P07996 EXPRESSION TAG SEQADV 2OUH THR B 66 UNP P07996 ALA 84 VARIANT SEQADV 2OUH THR B 240 UNP P07996 EXPRESSION TAG SEQADV 2OUH GLY B 241 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 242 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 243 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 244 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 245 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 246 UNP P07996 EXPRESSION TAG SEQADV 2OUH HIS B 247 UNP P07996 EXPRESSION TAG SEQRES 1 A 251 ARG SER PRO TRP ASN ARG ILE PRO GLU SER GLY GLY ASP SEQRES 2 A 251 ASN SER VAL PHE ASP ILE PHE GLU LEU THR GLY ALA ALA SEQRES 3 A 251 ARG LYS GLY SER GLY ARG ARG LEU VAL LYS GLY PRO ASP SEQRES 4 A 251 PRO SER SER PRO ALA PHE ARG ILE GLU ASP ALA ASN LEU SEQRES 5 A 251 ILE PRO PRO VAL PRO ASP ASP LYS PHE GLN ASP LEU VAL SEQRES 6 A 251 ASP ALA VAL ARG THR GLU LYS GLY PHE LEU LEU LEU ALA SEQRES 7 A 251 SER LEU ARG GLN MET LYS LYS THR ARG GLY THR LEU LEU SEQRES 8 A 251 ALA LEU GLU ARG LYS ASP HIS SER GLY GLN VAL PHE SER SEQRES 9 A 251 VAL VAL SER ASN GLY LYS ALA GLY THR LEU ASP LEU SER SEQRES 10 A 251 LEU THR VAL GLN GLY LYS GLN HIS VAL VAL SER VAL GLU SEQRES 11 A 251 GLU ALA LEU LEU ALA THR GLY GLN TRP LYS SER ILE THR SEQRES 12 A 251 LEU PHE VAL GLN GLU ASP ARG ALA GLN LEU TYR ILE ASP SEQRES 13 A 251 CYS GLU LYS MET GLU ASN ALA GLU LEU ASP VAL PRO ILE SEQRES 14 A 251 GLN SER VAL PHE THR ARG ASP LEU ALA SER ILE ALA ARG SEQRES 15 A 251 LEU ARG ILE ALA LYS GLY GLY VAL ASN ASP ASN PHE GLN SEQRES 16 A 251 GLY VAL LEU GLN ASN VAL ARG PHE VAL PHE GLY THR THR SEQRES 17 A 251 PRO GLU ASP ILE LEU ARG ASN LYS GLY CYS SER SER SER SEQRES 18 A 251 THR SER VAL LEU LEU THR LEU ASP ASN ASN VAL VAL ASN SEQRES 19 A 251 GLY SER SER PRO ALA ILE ARG THR ASN THR GLY HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 B 251 ARG SER PRO TRP ASN ARG ILE PRO GLU SER GLY GLY ASP SEQRES 2 B 251 ASN SER VAL PHE ASP ILE PHE GLU LEU THR GLY ALA ALA SEQRES 3 B 251 ARG LYS GLY SER GLY ARG ARG LEU VAL LYS GLY PRO ASP SEQRES 4 B 251 PRO SER SER PRO ALA PHE ARG ILE GLU ASP ALA ASN LEU SEQRES 5 B 251 ILE PRO PRO VAL PRO ASP ASP LYS PHE GLN ASP LEU VAL SEQRES 6 B 251 ASP ALA VAL ARG THR GLU LYS GLY PHE LEU LEU LEU ALA SEQRES 7 B 251 SER LEU ARG GLN MET LYS LYS THR ARG GLY THR LEU LEU SEQRES 8 B 251 ALA LEU GLU ARG LYS ASP HIS SER GLY GLN VAL PHE SER SEQRES 9 B 251 VAL VAL SER ASN GLY LYS ALA GLY THR LEU ASP LEU SER SEQRES 10 B 251 LEU THR VAL GLN GLY LYS GLN HIS VAL VAL SER VAL GLU SEQRES 11 B 251 GLU ALA LEU LEU ALA THR GLY GLN TRP LYS SER ILE THR SEQRES 12 B 251 LEU PHE VAL GLN GLU ASP ARG ALA GLN LEU TYR ILE ASP SEQRES 13 B 251 CYS GLU LYS MET GLU ASN ALA GLU LEU ASP VAL PRO ILE SEQRES 14 B 251 GLN SER VAL PHE THR ARG ASP LEU ALA SER ILE ALA ARG SEQRES 15 B 251 LEU ARG ILE ALA LYS GLY GLY VAL ASN ASP ASN PHE GLN SEQRES 16 B 251 GLY VAL LEU GLN ASN VAL ARG PHE VAL PHE GLY THR THR SEQRES 17 B 251 PRO GLU ASP ILE LEU ARG ASN LYS GLY CYS SER SER SER SEQRES 18 B 251 THR SER VAL LEU LEU THR LEU ASP ASN ASN VAL VAL ASN SEQRES 19 B 251 GLY SER SER PRO ALA ILE ARG THR ASN THR GLY HIS HIS SEQRES 20 B 251 HIS HIS HIS HIS HET SO4 A 248 5 HET SO4 A 249 5 HET SO4 A 250 5 HET SO4 B 248 5 HET SO4 B 249 5 HET SO4 B 250 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *87(H2 O) HELIX 1 1 ILE A 15 GLY A 20 1 6 HELIX 2 2 ALA A 21 LYS A 24 5 4 HELIX 3 3 ASP A 45 ILE A 49 5 5 HELIX 4 4 PRO A 53 LYS A 68 1 16 HELIX 5 5 PRO A 164 PHE A 169 1 6 HELIX 6 6 ASP A 172 ILE A 176 1 5 HELIX 7 7 THR A 204 ASN A 211 1 8 HELIX 8 8 ILE B 15 THR B 19 1 5 HELIX 9 9 ASP B 45 ILE B 49 5 5 HELIX 10 10 PRO B 53 LYS B 68 1 16 HELIX 11 11 PRO B 164 VAL B 168 5 5 HELIX 12 12 ASP B 172 SER B 175 5 4 HELIX 13 13 THR B 204 ASN B 211 1 8 SHEET 1 A 4 PHE A 13 ASP A 14 0 SHEET 2 A 4 GLY A 192 VAL A 200 -1 O PHE A 199 N PHE A 13 SHEET 3 A 4 ALA A 40 ILE A 43 -1 N ILE A 43 O GLY A 192 SHEET 4 A 4 ARG A 28 VAL A 31 -1 N VAL A 31 O ALA A 40 SHEET 1 B 6 PHE A 13 ASP A 14 0 SHEET 2 B 6 GLY A 192 VAL A 200 -1 O PHE A 199 N PHE A 13 SHEET 3 B 6 GLY A 69 GLN A 78 -1 N LEU A 73 O ARG A 198 SHEET 4 B 6 LYS A 136 GLN A 143 -1 O LEU A 140 N LEU A 72 SHEET 5 B 6 ARG A 146 ILE A 151 -1 O GLN A 148 N PHE A 141 SHEET 6 B 6 GLU A 157 GLU A 160 -1 O GLU A 157 N LEU A 149 SHEET 1 C 5 LYS A 119 VAL A 125 0 SHEET 2 C 5 THR A 109 VAL A 116 -1 N VAL A 116 O LYS A 119 SHEET 3 C 5 GLN A 97 ASN A 104 -1 N VAL A 102 O ASP A 111 SHEET 4 C 5 ARG A 83 ARG A 91 -1 N GLY A 84 O SER A 103 SHEET 5 C 5 ALA A 177 ILE A 181 -1 O ARG A 180 N ALA A 88 SHEET 1 D 4 PHE B 13 ASP B 14 0 SHEET 2 D 4 GLY B 192 VAL B 200 -1 O PHE B 199 N PHE B 13 SHEET 3 D 4 ALA B 40 ILE B 43 -1 N ILE B 43 O GLY B 192 SHEET 4 D 4 LEU B 30 VAL B 31 -1 N VAL B 31 O ALA B 40 SHEET 1 E 6 PHE B 13 ASP B 14 0 SHEET 2 E 6 GLY B 192 VAL B 200 -1 O PHE B 199 N PHE B 13 SHEET 3 E 6 GLY B 69 GLN B 78 -1 N LEU B 73 O ARG B 198 SHEET 4 E 6 TRP B 135 GLN B 143 -1 O LEU B 140 N LEU B 72 SHEET 5 E 6 ARG B 146 ILE B 151 -1 O GLN B 148 N PHE B 141 SHEET 6 E 6 MET B 156 GLU B 160 -1 O GLU B 157 N LEU B 149 SHEET 1 F 5 LYS B 119 VAL B 125 0 SHEET 2 F 5 THR B 109 VAL B 116 -1 N LEU B 114 O HIS B 121 SHEET 3 F 5 GLN B 97 ASN B 104 -1 N VAL B 102 O ASP B 111 SHEET 4 F 5 ARG B 83 ARG B 91 -1 N GLY B 84 O SER B 103 SHEET 5 F 5 ALA B 177 ILE B 181 -1 O ARG B 180 N ALA B 88 SSBOND 1 CYS A 153 CYS A 214 1555 1555 2.03 SSBOND 2 CYS B 153 CYS B 214 1555 1555 2.67 SITE 1 AC1 5 ARG A 29 VAL A 31 ARG A 42 ARG A 77 SITE 2 AC1 5 HOH A 281 SITE 1 AC2 5 ARG A 42 ARG A 77 MET A 79 GLY A 133 SITE 2 AC2 5 HOH A 310 SITE 1 AC3 3 LYS B 24 PRO B 51 HOH B 265 SITE 1 AC4 3 VAL B 31 ARG B 42 VAL B 193 SITE 1 AC5 2 ARG B 42 GLU B 44 SITE 1 AC6 5 ARG B 42 GLN B 78 MET B 79 GLN B 191 SITE 2 AC6 5 GLY B 192 CRYST1 40.316 41.069 241.779 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004136 0.00000