HEADER HYDROLASE 15-FEB-07 2OVY TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF RAT PHOSPHODIESTERASE 10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE-10A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: PDE10A2; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PDE10A, PDE10A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1392 KEYWDS PHOSPHODIESTERASE 10A; ZN-BINDING SITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PANDIT,E.S.MARR REVDAT 5 21-FEB-24 2OVY 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2OVY 1 REMARK REVDAT 3 13-JUL-11 2OVY 1 VERSN REVDAT 2 24-FEB-09 2OVY 1 VERSN REVDAT 1 06-MAR-07 2OVY 0 JRNL AUTH T.A.CHAPPIE,J.M.HUMPHREY,M.P.ALLEN,K.G.ESTEP,C.B.FOX, JRNL AUTH 2 L.A.LEBEL,S.LIRAS,E.S.MARR,F.S.MENNITI,J.PANDIT,C.J.SCHMIDT, JRNL AUTH 3 M.TU,R.D.WILLIAMS,F.V.YANG JRNL TITL DISCOVERY OF A SERIES OF JRNL TITL 2 6,7-DIMETHOXY-4-PYRROLIDYLQUINAZOLINE PDE10A INHIBITORS JRNL REF J.MED.CHEM. V. 50 182 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 17228859 JRNL DOI 10.1021/JM060653B REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 41986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 238 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : -0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2592 ; 0.036 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3514 ; 2.497 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.250 ;23.710 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;13.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.315 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.216 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1961 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1314 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1818 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 252 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1610 ; 1.988 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2479 ; 2.759 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 4.451 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1035 ; 6.557 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000041651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.39850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.87109 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.83167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 60.39850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.87109 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.83167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 60.39850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.87109 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.83167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.74218 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.66333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.74218 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.66333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.74218 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.66333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 SER A 430 REMARK 465 SER A 431 REMARK 465 GLY A 432 REMARK 465 LEU A 433 REMARK 465 VAL A 434 REMARK 465 PRO A 435 REMARK 465 ARG A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 ALA A 439 REMARK 465 MET A 440 REMARK 465 GLY A 441 REMARK 465 THR A 442 REMARK 465 SER A 443 REMARK 465 GLU A 444 REMARK 465 GLU A 445 REMARK 465 TRP A 446 REMARK 465 GLN A 447 REMARK 465 GLY A 448 REMARK 465 LEU A 449 REMARK 465 MET A 450 REMARK 465 HIS A 451 REMARK 465 PHE A 452 REMARK 465 GLY A 758 REMARK 465 GLU A 759 REMARK 465 GLU A 760 REMARK 465 THR A 761 REMARK 465 ALA A 762 REMARK 465 MET A 763 REMARK 465 TRP A 764 REMARK 465 ILE A 765 REMARK 465 SER A 766 REMARK 465 GLY A 767 REMARK 465 PRO A 768 REMARK 465 ALA A 769 REMARK 465 THR A 770 REMARK 465 SER A 771 REMARK 465 LYS A 772 REMARK 465 SER A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLU A 776 REMARK 465 LYS A 777 REMARK 465 PRO A 778 REMARK 465 THR A 779 REMARK 465 ARG A 780 REMARK 465 LYS A 781 REMARK 465 VAL A 782 REMARK 465 ASP A 783 REMARK 465 ASP A 784 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 56 O HOH A 301 1.80 REMARK 500 NH1 ARG A 558 O HOH A 250 1.90 REMARK 500 CB CYS A 459 O HOH A 322 1.91 REMARK 500 O3 SO4 A 997 O HOH A 250 1.98 REMARK 500 O HOH A 320 O HOH A 323 1.99 REMARK 500 O2 SO4 A 997 O HOH A 250 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 318 O HOH A 321 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 463 CD GLU A 463 OE1 0.068 REMARK 500 TYR A 509 CD1 TYR A 509 CE1 0.123 REMARK 500 TYR A 528 CE2 TYR A 528 CD2 0.099 REMARK 500 GLU A 582 CG GLU A 582 CD 0.113 REMARK 500 GLU A 608 CD GLU A 608 OE2 0.086 REMARK 500 GLU A 610 CG GLU A 610 CD 0.142 REMARK 500 LYS A 618 CE LYS A 618 NZ 0.168 REMARK 500 PHE A 629 CG PHE A 629 CD2 0.125 REMARK 500 VAL A 668 CB VAL A 668 CG2 0.139 REMARK 500 GLU A 685 CG GLU A 685 CD 0.101 REMARK 500 PHE A 686 CD1 PHE A 686 CE1 0.123 REMARK 500 TYR A 720 CD1 TYR A 720 CE1 0.145 REMARK 500 TYR A 720 CE2 TYR A 720 CD2 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 510 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 565 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 LYS A 567 CD - CE - NZ ANGL. DEV. = -14.1 DEGREES REMARK 500 LEU A 613 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 PHE A 629 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 632 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 652 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 653 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 THR A 661 CA - CB - CG2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 681 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 691 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 PHE A 719 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 746 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 569 36.02 71.77 REMARK 500 VAL A 723 -61.46 -131.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A9002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 1 O REMARK 620 2 HOH A 2 O 90.2 REMARK 620 3 HOH A 3 O 101.0 168.6 REMARK 620 4 HOH A 4 O 86.6 83.5 94.9 REMARK 620 5 HOH A 5 O 169.6 82.2 86.5 85.6 REMARK 620 6 ASP A 554 OD1 84.7 91.0 92.2 169.7 102.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A9001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 3 O REMARK 620 2 HIS A 519 NE2 148.6 REMARK 620 3 HIS A 553 NE2 108.1 103.2 REMARK 620 4 ASP A 554 OD2 90.5 87.9 89.2 REMARK 620 5 ASP A 664 OD1 91.9 87.9 93.8 175.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PFJ A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O8H RELATED DB: PDB REMARK 900 RELATED ID: 2OVV RELATED DB: PDB DBREF 2OVY A 442 784 UNP Q9QYJ6 Q9QYJ6_RAT 452 794 SEQADV 2OVY MET A 423 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY HIS A 424 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY HIS A 425 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY HIS A 426 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY HIS A 427 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY HIS A 428 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY HIS A 429 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY SER A 430 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY SER A 431 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY GLY A 432 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY LEU A 433 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY VAL A 434 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY PRO A 435 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY ARG A 436 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY GLY A 437 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY SER A 438 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY ALA A 439 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY MET A 440 UNP Q9QYJ6 EXPRESSION TAG SEQADV 2OVY GLY A 441 UNP Q9QYJ6 EXPRESSION TAG SEQRES 1 A 362 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 362 ARG GLY SER ALA MET GLY THR SER GLU GLU TRP GLN GLY SEQRES 3 A 362 LEU MET HIS PHE ASN LEU PRO ALA ARG ILE CYS ARG ASP SEQRES 4 A 362 ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN SEQRES 5 A 362 MET TRP PRO GLY ILE PHE VAL TYR MET ILE HIS ARG SER SEQRES 6 A 362 CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG SEQRES 7 A 362 PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO SEQRES 8 A 362 TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS SEQRES 9 A 362 MET TYR ALA ILE LEU GLN ASN ASN ASN GLY LEU PHE THR SEQRES 10 A 362 ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS SEQRES 11 A 362 HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU SEQRES 12 A 362 GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SEQRES 13 A 362 SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER SEQRES 14 A 362 ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SEQRES 15 A 362 SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG SEQRES 16 A 362 LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY SEQRES 17 A 362 ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER SEQRES 18 A 362 LEU ASN LEU HIS ASN GLN SER HIS ARG ASP ARG VAL ILE SEQRES 19 A 362 GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR SEQRES 20 A 362 LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE SEQRES 21 A 362 TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS SEQRES 22 A 362 LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS SEQRES 23 A 362 ARG ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN SEQRES 24 A 362 ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE SEQRES 25 A 362 LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP SEQRES 26 A 362 ASN LEU ASN GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU SEQRES 27 A 362 THR ALA MET TRP ILE SER GLY PRO ALA THR SER LYS SER SEQRES 28 A 362 THR SER GLU LYS PRO THR ARG LYS VAL ASP ASP HET SO4 A 997 10 HET ZN A9001 1 HET MG A9002 1 HET PFJ A 999 30 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM PFJ 6,7-DIMETHOXY-4-[(3R)-3-(QUINOXALIN-2-YLOXY)PYRROLIDIN- HETNAM 2 PFJ 1-YL]QUINAZOLINE FORMUL 2 SO4 O4 S 2- FORMUL 3 ZN ZN 2+ FORMUL 4 MG MG 2+ FORMUL 5 PFJ C22 H21 N5 O3 FORMUL 6 HOH *334(H2 O) HELIX 1 1 PRO A 455 ILE A 462 1 8 HELIX 2 2 PHE A 472 ASN A 474 5 3 HELIX 3 3 MET A 475 GLY A 489 1 15 HELIX 4 4 GLU A 494 ASN A 508 1 15 HELIX 5 5 ASN A 516 ASN A 533 1 18 HELIX 6 6 THR A 539 HIS A 553 1 15 HELIX 7 7 SER A 561 ASP A 569 1 9 HELIX 8 8 HIS A 570 TYR A 576 1 7 HELIX 9 9 SER A 579 LEU A 595 1 17 HELIX 10 10 SER A 605 THR A 623 1 19 HELIX 11 11 ASP A 624 THR A 641 1 18 HELIX 12 12 ASN A 648 LEU A 665 1 18 HELIX 13 13 CYS A 666 LYS A 670 5 5 HELIX 14 14 LEU A 671 LEU A 696 1 26 HELIX 15 15 ILE A 701 ASP A 710 5 10 HELIX 16 16 GLU A 711 VAL A 723 1 13 HELIX 17 17 VAL A 723 LEU A 735 1 13 HELIX 18 18 THR A 738 ARG A 757 1 20 LINK O HOH A 1 MG MG A9002 1555 1555 2.20 LINK O HOH A 2 MG MG A9002 1555 1555 2.21 LINK O HOH A 3 ZN ZN A9001 1555 1555 1.96 LINK O HOH A 3 MG MG A9002 1555 1555 2.09 LINK O HOH A 4 MG MG A9002 1555 1555 2.18 LINK O HOH A 5 MG MG A9002 1555 1555 2.20 LINK NE2 HIS A 519 ZN ZN A9001 1555 1555 2.01 LINK NE2 HIS A 553 ZN ZN A9001 1555 1555 2.10 LINK OD2 ASP A 554 ZN ZN A9001 1555 1555 2.18 LINK OD1 ASP A 554 MG MG A9002 1555 1555 2.10 LINK OD1 ASP A 664 ZN ZN A9001 1555 1555 2.14 SITE 1 AC1 10 HOH A 95 HOH A 187 HOH A 250 HOH A 264 SITE 2 AC1 10 PRO A 471 PHE A 472 GLU A 473 ASN A 474 SITE 3 AC1 10 ARG A 510 ARG A 558 SITE 1 AC2 6 HOH A 3 HIS A 519 HIS A 553 ASP A 554 SITE 2 AC2 6 ASP A 664 MG A9002 SITE 1 AC3 7 HOH A 1 HOH A 2 HOH A 3 HOH A 4 SITE 2 AC3 7 HOH A 5 ASP A 554 ZN A9001 SITE 1 AC4 12 HOH A 85 HOH A 249 PHE A 629 LEU A 665 SITE 2 AC4 12 VAL A 668 TYR A 683 MET A 703 GLN A 716 SITE 3 AC4 12 GLY A 718 PHE A 719 ALA A 722 VAL A 723 CRYST1 120.797 120.797 83.495 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008278 0.004780 0.000000 0.00000 SCALE2 0.000000 0.009559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011977 0.00000