HEADER OXIDOREDUCTASE 22-FEB-07 2OYO TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PEROXIDASE-RELATED PROTEIN TITLE 2 (YP_604910.1) FROM DEINOCOCCUS GEOTHERMALIS DSM 11300 AT 1.51 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PEROXIDASE-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS GEOTHERMALIS; SOURCE 3 ORGANISM_TAXID: 319795; SOURCE 4 STRAIN: DSM 11300; SOURCE 5 GENE: YP_604910.1, DGEO_1446; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_604910.1, UNCHARACTERISED PEROXIDASE-RELATED, UNCHARACTERIZED KEYWDS 2 PEROXIDASE-RELATED, CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY, KEYWDS 3 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 4 PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2OYO 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2OYO 1 REMARK REVDAT 3 13-JUL-11 2OYO 1 VERSN REVDAT 2 24-FEB-09 2OYO 1 VERSN REVDAT 1 20-MAR-07 2OYO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PEROXIDASE-RELATED JRNL TITL 2 PROTEIN (YP_604910.1) FROM DEINOCOCCUS GEOTHERMALIS DSM JRNL TITL 3 11300 AT 1.51 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 64519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3013 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1987 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4114 ; 1.497 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4816 ; 1.034 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 4.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;37.922 ;23.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;11.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3414 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 626 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 638 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2096 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1509 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1485 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 281 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 77 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2264 ; 1.204 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 748 ; 0.278 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2996 ; 1.408 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1285 ; 2.659 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1118 ; 3.917 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO REMARK 3 ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 3. THE 2-METHYL-2,4-PENTANEDIOL MOLECULES FROM THE REMARK 3 CRYSTALLIZATION WERE MODELED INTO THE STRUCTURE. REMARK 3 4. UNEXPLAINED ELECTRON DENSITIES OBSERVED NEAR RESIDUES 189 REMARK 3 AND 192 OF THE B SUBUNIT WERE NOT MODELED. REMARK 4 REMARK 4 2OYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97916, 0.97886 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 39.163 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 40.0% MPD, 0.1M BICINE PH REMARK 280 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.82450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.15849 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.36133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.82450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.15849 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.36133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.82450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.15849 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.36133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.82450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 39.15849 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.36133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.82450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 39.15849 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.36133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.82450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 39.15849 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.36133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.31699 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.72267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 78.31699 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.72267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 78.31699 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.72267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 78.31699 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.72267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 78.31699 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.72267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 78.31699 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.72267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -197.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 242 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 LYS A 9 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 GLN B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 ARG A 11 NE CZ NH1 NH2 REMARK 470 GLU A 125 CD OE1 OE2 REMARK 470 ARG A 192 CZ NH1 NH2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 ARG B 11 NE CZ NH1 NH2 REMARK 470 LYS B 29 NZ REMARK 470 LYS B 33 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 158 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 119 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP B 158 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 117 107.98 -162.23 REMARK 500 ASN B 117 106.84 -163.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 197 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 371529 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2OYO A 1 195 UNP Q1IYE3 Q1IYE3_DEIGD 1 195 DBREF 2OYO B 1 195 UNP Q1IYE3 Q1IYE3_DEIGD 1 195 SEQADV 2OYO GLY A 0 UNP Q1IYE3 EXPRESSION TAG SEQADV 2OYO MSE A 1 UNP Q1IYE3 MET 1 MODIFIED RESIDUE SEQADV 2OYO MSE A 163 UNP Q1IYE3 MET 163 MODIFIED RESIDUE SEQADV 2OYO MSE A 171 UNP Q1IYE3 MET 171 MODIFIED RESIDUE SEQADV 2OYO GLY B 0 UNP Q1IYE3 EXPRESSION TAG SEQADV 2OYO MSE B 1 UNP Q1IYE3 MET 1 MODIFIED RESIDUE SEQADV 2OYO MSE B 163 UNP Q1IYE3 MET 163 MODIFIED RESIDUE SEQADV 2OYO MSE B 171 UNP Q1IYE3 MET 171 MODIFIED RESIDUE SEQRES 1 A 196 GLY MSE THR THR THR GLN PRO GLU ALA LYS ASP ARG ILE SEQRES 2 A 196 SER SER LEU PRO VAL PRO ASP ALA THR GLN VAL PRO GLU SEQRES 3 A 196 GLY VAL ARG LYS LEU TRP ALA LYS ALA GLU ALA ASN ILE SEQRES 4 A 196 GLY PHE VAL PRO ASN VAL PHE ARG ALA GLN ALA VAL ASN SEQRES 5 A 196 GLY GLU GLN PHE LEU ALA TRP TRP ASN TYR PHE ASN LEU SEQRES 6 A 196 LEU LEU ASN LYS GLU GLY TYR LEU THR ASN ALA GLU ARG SEQRES 7 A 196 GLU LEU VAL ALA VAL VAL VAL SER GLY VAL ASN ARG CYS SEQRES 8 A 196 LEU TYR CYS ALA VAL SER HIS GLY ALA ALA LEU ARG GLU SEQRES 9 A 196 PHE LEU GLY ASP PRO GLN LYS ALA ASP ALA VAL ALA VAL SEQRES 10 A 196 ASN TRP ARG HIS ALA ASP LEU THR GLU ARG GLU GLN ALA SEQRES 11 A 196 LEU ALA ALA TYR ALA GLU LYS LEU THR ARG HIS PRO ALA SEQRES 12 A 196 GLU VAL THR ALA ALA ASP LEU GLU PRO LEU ARG ALA VAL SEQRES 13 A 196 GLY LEU ASP ASP HIS GLN ILE MSE GLU LEU VAL GLN VAL SEQRES 14 A 196 ILE GLY MSE PHE ASN LEU THR ASN ARG VAL SER SER ALA SEQRES 15 A 196 LEU GLY PHE VAL PRO ASN PRO GLU TYR TYR ARG GLN ALA SEQRES 16 A 196 ARG SEQRES 1 B 196 GLY MSE THR THR THR GLN PRO GLU ALA LYS ASP ARG ILE SEQRES 2 B 196 SER SER LEU PRO VAL PRO ASP ALA THR GLN VAL PRO GLU SEQRES 3 B 196 GLY VAL ARG LYS LEU TRP ALA LYS ALA GLU ALA ASN ILE SEQRES 4 B 196 GLY PHE VAL PRO ASN VAL PHE ARG ALA GLN ALA VAL ASN SEQRES 5 B 196 GLY GLU GLN PHE LEU ALA TRP TRP ASN TYR PHE ASN LEU SEQRES 6 B 196 LEU LEU ASN LYS GLU GLY TYR LEU THR ASN ALA GLU ARG SEQRES 7 B 196 GLU LEU VAL ALA VAL VAL VAL SER GLY VAL ASN ARG CYS SEQRES 8 B 196 LEU TYR CYS ALA VAL SER HIS GLY ALA ALA LEU ARG GLU SEQRES 9 B 196 PHE LEU GLY ASP PRO GLN LYS ALA ASP ALA VAL ALA VAL SEQRES 10 B 196 ASN TRP ARG HIS ALA ASP LEU THR GLU ARG GLU GLN ALA SEQRES 11 B 196 LEU ALA ALA TYR ALA GLU LYS LEU THR ARG HIS PRO ALA SEQRES 12 B 196 GLU VAL THR ALA ALA ASP LEU GLU PRO LEU ARG ALA VAL SEQRES 13 B 196 GLY LEU ASP ASP HIS GLN ILE MSE GLU LEU VAL GLN VAL SEQRES 14 B 196 ILE GLY MSE PHE ASN LEU THR ASN ARG VAL SER SER ALA SEQRES 15 B 196 LEU GLY PHE VAL PRO ASN PRO GLU TYR TYR ARG GLN ALA SEQRES 16 B 196 ARG MODRES 2OYO MSE A 163 MET SELENOMETHIONINE MODRES 2OYO MSE A 171 MET SELENOMETHIONINE MODRES 2OYO MSE B 163 MET SELENOMETHIONINE MODRES 2OYO MSE B 171 MET SELENOMETHIONINE HET MSE A 163 8 HET MSE A 171 8 HET MSE B 163 8 HET MSE B 171 8 HET MPD A 196 8 HET MPD A 197 8 HET MPD B 196 8 HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MPD 3(C6 H14 O2) FORMUL 6 HOH *432(H2 O) HELIX 1 1 ASP A 19 VAL A 23 5 5 HELIX 2 2 PRO A 24 GLY A 39 1 16 HELIX 3 3 ASN A 43 GLN A 48 1 6 HELIX 4 4 ASN A 51 ASN A 67 1 17 HELIX 5 5 THR A 73 ARG A 89 1 17 HELIX 6 6 CYS A 90 GLY A 106 1 17 HELIX 7 7 ASP A 107 ASN A 117 1 11 HELIX 8 8 TRP A 118 ALA A 121 5 4 HELIX 9 9 THR A 124 HIS A 140 1 17 HELIX 10 10 PRO A 141 VAL A 144 5 4 HELIX 11 11 THR A 145 ASP A 148 5 4 HELIX 12 12 LEU A 149 VAL A 155 1 7 HELIX 13 13 ASP A 158 LEU A 182 1 25 HELIX 14 14 ASN A 187 GLN A 193 1 7 HELIX 15 15 ASP B 19 VAL B 23 5 5 HELIX 16 16 PRO B 24 GLY B 39 1 16 HELIX 17 17 ASN B 43 GLN B 48 1 6 HELIX 18 18 ASN B 51 ASN B 67 1 17 HELIX 19 19 THR B 73 ARG B 89 1 17 HELIX 20 20 CYS B 90 GLY B 106 1 17 HELIX 21 21 ASP B 107 ASN B 117 1 11 HELIX 22 22 TRP B 118 ALA B 121 5 4 HELIX 23 23 THR B 124 HIS B 140 1 17 HELIX 24 24 PRO B 141 VAL B 144 5 4 HELIX 25 25 THR B 145 ASP B 148 5 4 HELIX 26 26 LEU B 149 VAL B 155 1 7 HELIX 27 27 ASP B 158 LEU B 182 1 25 HELIX 28 28 ASN B 187 GLN B 193 1 7 LINK C ILE A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLU A 164 1555 1555 1.33 LINK C GLY A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N PHE A 172 1555 1555 1.32 LINK C ILE B 162 N MSE B 163 1555 1555 1.33 LINK C MSE B 163 N GLU B 164 1555 1555 1.32 LINK C GLY B 170 N MSE B 171 1555 1555 1.31 LINK C MSE B 171 N PHE B 172 1555 1555 1.33 SITE 1 AC1 3 GLU B 69 TYR B 71 HOH B 348 SITE 1 AC2 10 LYS A 33 ALA A 36 ASN A 37 GLY A 70 SITE 2 AC2 10 TYR A 71 LEU A 72 THR A 73 HOH A 239 SITE 3 AC2 10 HOH A 338 HOH A 413 SITE 1 AC3 5 GLN A 109 LEU B 91 VAL B 185 PRO B 186 SITE 2 AC3 5 TYR B 191 CRYST1 135.649 135.649 118.084 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007370 0.004260 0.000000 0.00000 SCALE2 0.000000 0.008510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008470 0.00000