HEADER OXIDOREDUCTASE 23-FEB-07 2OZ0 TITLE MECHANISTIC AND STRUCTURAL STUDIES OF H373Q FLAVOCYTOCHROME B2: TITLE 2 EFFECTS OF MUTATING THE ACTIVE SITE BASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FLAVOCYTOCHROME B2; COMPND 5 SYNONYM: L-LACTATE DEHYDROGENASE [CYTOCHROME], L-LACTATE COMPND 6 FERRICYTOCHROME C OXIDOREDUCTASE, L-LCR; COMPND 7 EC: 1.1.2.3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CYB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDSB2 KEYWDS FLAVOCYTOCHROME B2, FMN, PYRUVATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-L.TSAI,K.GOKULAN,P.SOBRADO,J.C.SACCHETTINI,P.F.FITZPATRICK REVDAT 5 15-NOV-23 2OZ0 1 ATOM REVDAT 4 30-AUG-23 2OZ0 1 REMARK REVDAT 3 20-OCT-21 2OZ0 1 REMARK SEQADV REVDAT 2 24-FEB-09 2OZ0 1 VERSN REVDAT 1 11-SEP-07 2OZ0 0 JRNL AUTH C.L.TSAI,K.GOKULAN,P.SOBRADO,J.C.SACCHETTINI,P.F.FITZPATRICK JRNL TITL MECHANISTIC AND STRUCTURAL STUDIES OF H373Q FLAVOCYTOCHROME JRNL TITL 2 B2: EFFECTS OF MUTATING THE ACTIVE SITE BASE. JRNL REF BIOCHEMISTRY V. 46 7844 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17563122 JRNL DOI 10.1021/BI7005543 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 35636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1116 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 36.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.4740 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.604 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.291 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.461 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7213 ; 0.050 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9786 ; 4.284 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 891 ;13.790 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;39.977 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1294 ;27.967 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;26.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1102 ; 0.302 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5340 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4531 ; 0.372 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4995 ; 0.400 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 423 ; 0.286 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.125 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 136 ; 0.317 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4639 ; 1.894 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7213 ; 3.097 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3065 ; 4.586 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2571 ; 7.292 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.26000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1FCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, 17% PEG 3K, REMARK 280 0.2MM SUCROSE MONOLAURATE, PH 4.6, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.68067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.34033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.34033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.68067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33040 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.68067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 300 REMARK 465 LYS A 301 REMARK 465 ALA A 302 REMARK 465 GLY A 303 REMARK 465 PRO A 304 REMARK 465 LYS A 305 REMARK 465 ALA A 306 REMARK 465 MET A 307 REMARK 465 LYS A 308 REMARK 465 LYS A 309 REMARK 465 THR A 310 REMARK 465 ASN A 311 REMARK 465 VAL A 312 REMARK 465 GLU A 313 REMARK 465 GLU A 314 REMARK 465 SER A 315 REMARK 465 GLN A 316 REMARK 465 ALA A 511 REMARK 465 GLU B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 MET B 6 REMARK 465 ASN B 7 REMARK 465 LYS B 8 REMARK 465 GLN B 9 REMARK 465 LYS B 10 REMARK 465 ILE B 11 REMARK 465 SER B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 VAL B 16 REMARK 465 ALA B 17 REMARK 465 LYS B 18 REMARK 465 HIS B 19 REMARK 465 ASN B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 ASP B 23 REMARK 465 ASP B 24 REMARK 465 CYS B 25 REMARK 465 TRP B 26 REMARK 465 VAL B 27 REMARK 465 VAL B 28 REMARK 465 ILE B 29 REMARK 465 ASN B 30 REMARK 465 GLY B 31 REMARK 465 TYR B 32 REMARK 465 VAL B 33 REMARK 465 TYR B 34 REMARK 465 ASP B 35 REMARK 465 LEU B 36 REMARK 465 THR B 37 REMARK 465 ARG B 38 REMARK 465 PHE B 39 REMARK 465 LEU B 40 REMARK 465 PRO B 41 REMARK 465 ASN B 42 REMARK 465 HIS B 43 REMARK 465 PRO B 44 REMARK 465 GLY B 45 REMARK 465 GLY B 46 REMARK 465 GLN B 47 REMARK 465 ASP B 48 REMARK 465 VAL B 49 REMARK 465 ILE B 50 REMARK 465 LYS B 51 REMARK 465 PHE B 52 REMARK 465 ASN B 53 REMARK 465 ALA B 54 REMARK 465 GLY B 55 REMARK 465 LYS B 56 REMARK 465 ASP B 57 REMARK 465 VAL B 58 REMARK 465 THR B 59 REMARK 465 ALA B 60 REMARK 465 ILE B 61 REMARK 465 PHE B 62 REMARK 465 GLU B 63 REMARK 465 PRO B 64 REMARK 465 LEU B 65 REMARK 465 HIS B 66 REMARK 465 ALA B 67 REMARK 465 PRO B 68 REMARK 465 ASN B 69 REMARK 465 VAL B 70 REMARK 465 ILE B 71 REMARK 465 ASP B 72 REMARK 465 LYS B 73 REMARK 465 TYR B 74 REMARK 465 ILE B 75 REMARK 465 ALA B 76 REMARK 465 PRO B 77 REMARK 465 GLU B 78 REMARK 465 LYS B 79 REMARK 465 LYS B 80 REMARK 465 LEU B 81 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 LEU B 84 REMARK 465 GLN B 85 REMARK 465 GLY B 86 REMARK 465 SER B 87 REMARK 465 MET B 88 REMARK 465 PRO B 89 REMARK 465 PRO B 90 REMARK 465 GLU B 91 REMARK 465 LEU B 92 REMARK 465 VAL B 93 REMARK 465 CYS B 94 REMARK 465 PRO B 95 REMARK 465 PRO B 96 REMARK 465 TYR B 97 REMARK 465 THR B 300 REMARK 465 LYS B 301 REMARK 465 ALA B 302 REMARK 465 GLY B 303 REMARK 465 PRO B 304 REMARK 465 LYS B 305 REMARK 465 ALA B 306 REMARK 465 MET B 307 REMARK 465 LYS B 308 REMARK 465 LYS B 309 REMARK 465 THR B 310 REMARK 465 ASN B 311 REMARK 465 VAL B 312 REMARK 465 GLU B 313 REMARK 465 GLU B 314 REMARK 465 SER B 315 REMARK 465 GLN B 316 REMARK 465 ALA B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 299 CB CG OD1 ND2 REMARK 470 ASN B 299 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 382 N ALA A 383 1.59 REMARK 500 O ARG A 382 CA ALA A 383 1.66 REMARK 500 OE1 GLN A 252 N3 FMN A 569 1.74 REMARK 500 O LEU B 265 O VAL B 266 1.77 REMARK 500 O LYS B 246 O GLN B 247 1.77 REMARK 500 O GLU A 396 N ARG A 398 1.87 REMARK 500 CD1 ILE B 227 O TRP B 250 1.95 REMARK 500 OG SER B 234 OE1 GLU B 237 1.96 REMARK 500 O TYR B 130 OG SER B 133 2.00 REMARK 500 OG1 THR B 229 O GLN B 252 2.00 REMARK 500 NH2 ARG A 413 O3P FMN A 569 2.03 REMARK 500 OG1 THR A 506 OD1 ASP B 127 2.05 REMARK 500 OG SER B 228 O4 FMN B 570 2.05 REMARK 500 NH1 ARG B 353 OD1 ASP B 356 2.05 REMARK 500 O ALA A 196 O2' FMN A 569 2.08 REMARK 500 OD2 ASP B 409 O3' FMN B 570 2.10 REMARK 500 O ALA A 148 OD2 ASP A 379 2.11 REMARK 500 O VAL B 447 CD1 ILE B 451 2.11 REMARK 500 O GLY A 217 NZ LYS A 222 2.12 REMARK 500 OG SER B 234 CB GLU B 237 2.12 REMARK 500 O ALA A 54 NZ LYS A 56 2.15 REMARK 500 NE2 GLN A 218 NH1 ARG A 444 2.16 REMARK 500 O LYS B 109 CB LYS B 113 2.16 REMARK 500 N GLY B 317 NH2 ARG B 320 2.17 REMARK 500 OE1 GLN A 352 OG SER A 381 2.17 REMARK 500 CG1 VAL B 347 CA GLY B 367 2.18 REMARK 500 CE2 PHE B 278 CG2 VAL B 347 2.19 REMARK 500 O HIS A 19 O ASP A 24 2.19 REMARK 500 OG1 THR B 229 CA LEU B 253 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 353 CG LYS B 169 6555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 61 C ILE A 61 O -0.123 REMARK 500 PRO A 89 C PRO A 90 N -0.149 REMARK 500 ALA A 142 CA ALA A 142 CB -0.142 REMARK 500 TYR A 143 CG TYR A 143 CD1 -0.090 REMARK 500 TYR A 161 CD1 TYR A 161 CE1 0.148 REMARK 500 TYR A 161 CE2 TYR A 161 CD2 0.098 REMARK 500 VAL A 174 CB VAL A 174 CG2 -0.150 REMARK 500 TYR A 193 CE1 TYR A 193 CZ -0.093 REMARK 500 VAL A 194 CB VAL A 194 CG1 -0.151 REMARK 500 SER A 195 CB SER A 195 OG 0.094 REMARK 500 ALA A 198 CA ALA A 198 CB -0.130 REMARK 500 LYS A 222 C LYS A 222 O 0.134 REMARK 500 VAL A 223 CB VAL A 223 CG1 -0.173 REMARK 500 ALA A 242 CA ALA A 242 CB -0.143 REMARK 500 LYS A 246 CD LYS A 246 CE 0.160 REMARK 500 ILE A 248 CA ILE A 248 CB -0.191 REMARK 500 VAL A 266 CA VAL A 266 CB -0.140 REMARK 500 VAL A 266 CB VAL A 266 CG2 -0.222 REMARK 500 VAL A 274 CB VAL A 274 CG2 0.196 REMARK 500 LEU A 286 CG LEU A 286 CD1 0.262 REMARK 500 LYS A 340 CD LYS A 340 CE 0.212 REMARK 500 LYS A 340 CE LYS A 340 NZ 0.216 REMARK 500 LYS A 341 CD LYS A 341 CE 0.152 REMARK 500 LYS A 343 CB LYS A 343 CG 0.265 REMARK 500 LYS A 343 CD LYS A 343 CE 0.230 REMARK 500 ALA A 360 CA ALA A 360 CB -0.135 REMARK 500 VAL A 368 CB VAL A 368 CG1 -0.195 REMARK 500 GLU A 390 CG GLU A 390 CD 0.152 REMARK 500 GLU A 390 CD GLU A 390 OE2 0.094 REMARK 500 PHE A 407 C PHE A 407 O -0.124 REMARK 500 GLY A 410 N GLY A 410 CA -0.104 REMARK 500 ARG A 413 CG ARG A 413 CD 0.270 REMARK 500 ASP A 417 CB ASP A 417 CG 0.147 REMARK 500 ALA A 421 CA ALA A 421 CB -0.219 REMARK 500 CYS A 423 CB CYS A 423 SG -0.107 REMARK 500 ALA A 426 CA ALA A 426 CB -0.159 REMARK 500 GLY A 428 C GLY A 428 O -0.102 REMARK 500 VAL A 429 CB VAL A 429 CG1 -0.136 REMARK 500 VAL A 429 CB VAL A 429 CG2 -0.127 REMARK 500 ARG A 444 CZ ARG A 444 NH2 0.085 REMARK 500 GLY A 446 C GLY A 446 O 0.113 REMARK 500 ILE A 470 CA ILE A 470 CB -0.169 REMARK 500 GLU A 472 CG GLU A 472 CD 0.109 REMARK 500 GLU A 472 CD GLU A 472 OE2 0.073 REMARK 500 VAL A 488 CB VAL A 488 CG1 -0.150 REMARK 500 GLU A 509 C GLU A 509 O 0.168 REMARK 500 PRO B 99 CD PRO B 99 N 0.108 REMARK 500 ILE B 123 CA ILE B 123 CB -0.162 REMARK 500 THR B 137 CB THR B 137 CG2 0.329 REMARK 500 ALA B 160 CA ALA B 160 CB -0.170 REMARK 500 REMARK 500 THIS ENTRY HAS 83 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 SER A 12 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 SER A 12 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 PRO A 13 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 13 C - N - CD ANGL. DEV. = -15.4 DEGREES REMARK 500 PRO A 22 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO A 22 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 24 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 PHE A 39 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 PRO A 41 C - N - CA ANGL. DEV. = -11.1 DEGREES REMARK 500 PRO A 41 C - N - CD ANGL. DEV. = 21.7 DEGREES REMARK 500 PRO A 41 CA - N - CD ANGL. DEV. = -10.0 DEGREES REMARK 500 PRO A 44 C - N - CA ANGL. DEV. = 15.0 DEGREES REMARK 500 ASP A 57 N - CA - CB ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP A 57 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 VAL A 58 C - N - CA ANGL. DEV. = 21.0 DEGREES REMARK 500 VAL A 58 CA - CB - CG1 ANGL. DEV. = 10.9 DEGREES REMARK 500 VAL A 58 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 VAL A 58 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO A 64 C - N - CD ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO A 64 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 ASN A 69 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 ASP A 72 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO A 83 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO A 89 O - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO A 90 C - N - CA ANGL. DEV. = 34.0 DEGREES REMARK 500 PRO A 90 C - N - CD ANGL. DEV. = -36.3 DEGREES REMARK 500 GLU A 91 C - N - CA ANGL. DEV. = 29.7 DEGREES REMARK 500 THR A 102 CA - C - O ANGL. DEV. = 14.2 DEGREES REMARK 500 THR A 102 O - C - N ANGL. DEV. = -18.9 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 LYS A 113 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 SER A 114 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 LEU A 115 CA - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 LEU A 115 O - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO A 117 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 LEU A 119 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 LEU A 131 CB - CG - CD1 ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS A 138 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 TRP A 141 CE2 - CD2 - CG ANGL. DEV. = -7.5 DEGREES REMARK 500 GLU A 151 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ALA A 160 CA - C - O ANGL. DEV. = 17.4 DEGREES REMARK 500 ALA A 160 O - C - N ANGL. DEV. = -22.2 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 LYS A 167 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 LYS A 169 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 270 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 -57.13 -172.64 REMARK 500 ASP A 5 -40.41 74.50 REMARK 500 MET A 6 -73.83 75.58 REMARK 500 ASN A 7 -49.43 153.73 REMARK 500 GLN A 9 -62.84 127.53 REMARK 500 LYS A 10 175.98 84.42 REMARK 500 ILE A 11 171.40 152.33 REMARK 500 PRO A 13 18.75 -48.57 REMARK 500 ALA A 14 -1.04 -174.89 REMARK 500 LYS A 18 61.21 -109.33 REMARK 500 HIS A 19 -4.26 -140.36 REMARK 500 ASN A 20 -11.70 -38.59 REMARK 500 PRO A 22 63.13 -64.18 REMARK 500 ASP A 23 -45.68 -165.01 REMARK 500 ASN A 30 -145.24 44.96 REMARK 500 THR A 37 -33.82 -3.79 REMARK 500 LEU A 40 -64.17 -21.63 REMARK 500 PRO A 44 -57.92 -12.67 REMARK 500 ASP A 48 -61.65 19.29 REMARK 500 PHE A 52 12.49 -61.60 REMARK 500 ASN A 53 1.87 -152.63 REMARK 500 VAL A 58 -47.77 127.33 REMARK 500 PRO A 68 -75.76 -60.29 REMARK 500 ASN A 69 16.97 -44.50 REMARK 500 ILE A 71 -76.42 -65.25 REMARK 500 ASP A 72 15.33 -46.72 REMARK 500 PRO A 77 -9.18 -56.95 REMARK 500 LYS A 80 76.31 -59.56 REMARK 500 SER A 87 -127.92 -119.39 REMARK 500 GLU A 91 -40.47 69.55 REMARK 500 THR A 102 46.22 -152.40 REMARK 500 LYS A 103 63.41 39.74 REMARK 500 GLU A 104 -22.53 -165.23 REMARK 500 ASP A 105 64.60 -61.33 REMARK 500 ILE A 106 -47.26 -177.92 REMARK 500 LYS A 113 57.24 -33.60 REMARK 500 SER A 114 48.33 8.85 REMARK 500 LYS A 138 -35.37 -32.74 REMARK 500 ASN A 149 -130.01 69.92 REMARK 500 HIS A 162 7.91 -67.52 REMARK 500 THR A 181 -165.75 -167.34 REMARK 500 PRO A 191 34.17 -95.67 REMARK 500 ARG A 259 -22.59 -33.45 REMARK 500 VAL A 274 165.82 -48.58 REMARK 500 ARG A 289 75.55 -104.99 REMARK 500 LYS A 294 3.67 -59.06 REMARK 500 PHE A 297 70.88 -107.69 REMARK 500 ALA A 318 -2.19 106.64 REMARK 500 SER A 319 29.85 -177.41 REMARK 500 ALA A 321 28.06 -74.61 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 11 SER A 12 -138.66 REMARK 500 GLY A 31 TYR A 32 -142.38 REMARK 500 GLN A 47 ASP A 48 143.86 REMARK 500 ILE A 50 LYS A 51 143.77 REMARK 500 LYS A 56 ASP A 57 144.27 REMARK 500 ASP A 57 VAL A 58 -51.09 REMARK 500 GLN A 85 GLY A 86 -145.75 REMARK 500 PRO A 90 GLU A 91 -114.92 REMARK 500 LEU A 92 VAL A 93 149.50 REMARK 500 PRO A 96 TYR A 97 -64.85 REMARK 500 GLU A 104 ASP A 105 148.15 REMARK 500 ILE A 106 ALA A 107 149.85 REMARK 500 LYS A 222 VAL A 223 -149.80 REMARK 500 ALA A 231 SER A 232 148.92 REMARK 500 GLY A 273 VAL A 274 140.61 REMARK 500 PHE A 297 SER A 298 76.91 REMARK 500 LYS A 324 PHE A 325 147.83 REMARK 500 LYS A 403 LEU A 404 -145.90 REMARK 500 ASN A 445 GLY A 446 149.49 REMARK 500 ASN A 492 ASP A 493 143.68 REMARK 500 THR A 506 GLU A 507 -146.03 REMARK 500 GLU A 507 PHE A 508 -149.93 REMARK 500 PHE A 508 GLU A 509 -145.09 REMARK 500 GLU A 509 ASP A 510 138.00 REMARK 500 PRO B 99 GLY B 100 148.81 REMARK 500 ILE B 106 ALA B 107 139.73 REMARK 500 LYS B 113 SER B 114 -120.89 REMARK 500 ASP B 120 ASN B 121 141.85 REMARK 500 HIS B 187 VAL B 188 -142.22 REMARK 500 SER B 195 ALA B 196 -137.17 REMARK 500 LYS B 210 ASP B 211 149.32 REMARK 500 ALA B 231 SER B 232 147.31 REMARK 500 ASN B 256 SER B 257 139.91 REMARK 500 LYS B 296 PHE B 297 140.59 REMARK 500 GLY B 317 ALA B 318 -85.97 REMARK 500 LYS B 324 PHE B 325 148.89 REMARK 500 ILE B 394 LEU B 395 146.97 REMARK 500 ASN B 492 ASP B 493 -143.18 REMARK 500 ASP B 493 VAL B 494 -144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 72 0.12 SIDE CHAIN REMARK 500 HIS A 154 0.07 SIDE CHAIN REMARK 500 GLU A 507 0.10 SIDE CHAIN REMARK 500 ASP B 105 0.07 SIDE CHAIN REMARK 500 ASP B 127 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 10 12.48 REMARK 500 VAL A 58 12.55 REMARK 500 THR A 59 -10.68 REMARK 500 ALA A 67 20.53 REMARK 500 ASP A 72 -11.52 REMARK 500 LYS A 80 11.61 REMARK 500 ILE A 106 -15.81 REMARK 500 SER A 114 15.08 REMARK 500 LYS A 138 -14.25 REMARK 500 GLN A 139 10.55 REMARK 500 ALA A 148 -10.31 REMARK 500 GLU A 151 -10.93 REMARK 500 ALA A 160 -13.61 REMARK 500 THR A 181 -10.61 REMARK 500 MET A 293 -11.39 REMARK 500 PHE A 297 16.22 REMARK 500 ALA A 321 -11.21 REMARK 500 ILE A 326 10.90 REMARK 500 PHE A 380 -13.59 REMARK 500 ARG A 382 -21.10 REMARK 500 PRO A 384 -11.84 REMARK 500 LEU A 395 -23.30 REMARK 500 GLU A 396 -18.25 REMARK 500 CYS A 441 10.27 REMARK 500 GLU A 452 -13.64 REMARK 500 MET A 460 -10.54 REMARK 500 PRO A 475 -10.54 REMARK 500 PRO A 491 18.15 REMARK 500 ASP A 493 -16.34 REMARK 500 GLU A 507 13.42 REMARK 500 ALA B 98 -13.26 REMARK 500 PRO B 99 -15.69 REMARK 500 GLU B 104 13.61 REMARK 500 GLN B 111 -17.30 REMARK 500 LEU B 112 -16.00 REMARK 500 SER B 114 14.66 REMARK 500 PRO B 118 12.90 REMARK 500 LEU B 119 -10.21 REMARK 500 GLU B 151 -14.56 REMARK 500 THR B 153 -13.37 REMARK 500 HIS B 154 23.73 REMARK 500 VAL B 172 15.32 REMARK 500 HIS B 187 -11.70 REMARK 500 LEU B 199 -12.90 REMARK 500 CYS B 200 -12.51 REMARK 500 GLY B 208 -10.16 REMARK 500 ASP B 211 -11.61 REMARK 500 PRO B 224 15.00 REMARK 500 THR B 229 -11.80 REMARK 500 ALA B 242 22.42 REMARK 500 REMARK 500 THIS ENTRY HAS 77 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 560 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 43 NE2 REMARK 620 2 HEM A 560 NA 101.3 REMARK 620 3 HEM A 560 NB 79.6 84.4 REMARK 620 4 HEM A 560 NC 71.3 172.4 95.8 REMARK 620 5 HEM A 560 ND 92.8 83.2 163.8 95.3 REMARK 620 6 HIS A 66 NE2 144.7 112.6 93.6 75.0 100.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 569 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 570 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 571 DBREF 2OZ0 A 1 511 UNP P00175 CYB2_YEAST 81 591 DBREF 2OZ0 B 1 511 UNP P00175 CYB2_YEAST 81 591 SEQADV 2OZ0 GLN A 373 UNP P00175 HIS 453 ENGINEERED MUTATION SEQADV 2OZ0 GLN B 373 UNP P00175 HIS 453 ENGINEERED MUTATION SEQRES 1 A 511 GLU PRO LYS LEU ASP MET ASN LYS GLN LYS ILE SER PRO SEQRES 2 A 511 ALA GLU VAL ALA LYS HIS ASN LYS PRO ASP ASP CYS TRP SEQRES 3 A 511 VAL VAL ILE ASN GLY TYR VAL TYR ASP LEU THR ARG PHE SEQRES 4 A 511 LEU PRO ASN HIS PRO GLY GLY GLN ASP VAL ILE LYS PHE SEQRES 5 A 511 ASN ALA GLY LYS ASP VAL THR ALA ILE PHE GLU PRO LEU SEQRES 6 A 511 HIS ALA PRO ASN VAL ILE ASP LYS TYR ILE ALA PRO GLU SEQRES 7 A 511 LYS LYS LEU GLY PRO LEU GLN GLY SER MET PRO PRO GLU SEQRES 8 A 511 LEU VAL CYS PRO PRO TYR ALA PRO GLY GLU THR LYS GLU SEQRES 9 A 511 ASP ILE ALA ARG LYS GLU GLN LEU LYS SER LEU LEU PRO SEQRES 10 A 511 PRO LEU ASP ASN ILE ILE ASN LEU TYR ASP PHE GLU TYR SEQRES 11 A 511 LEU ALA SER GLN THR LEU THR LYS GLN ALA TRP ALA TYR SEQRES 12 A 511 TYR SER SER GLY ALA ASN ASP GLU VAL THR HIS ARG GLU SEQRES 13 A 511 ASN HIS ASN ALA TYR HIS ARG ILE PHE PHE LYS PRO LYS SEQRES 14 A 511 ILE LEU VAL ASP VAL ARG LYS VAL ASP ILE SER THR ASP SEQRES 15 A 511 MET LEU GLY SER HIS VAL ASP VAL PRO PHE TYR VAL SER SEQRES 16 A 511 ALA THR ALA LEU CYS LYS LEU GLY ASN PRO LEU GLU GLY SEQRES 17 A 511 GLU LYS ASP VAL ALA ARG GLY CYS GLY GLN GLY VAL THR SEQRES 18 A 511 LYS VAL PRO GLN MET ILE SER THR LEU ALA SER CYS SER SEQRES 19 A 511 PRO GLU GLU ILE ILE GLU ALA ALA PRO SER ASP LYS GLN SEQRES 20 A 511 ILE GLN TRP TYR GLN LEU TYR VAL ASN SER ASP ARG LYS SEQRES 21 A 511 ILE THR ASP ASP LEU VAL LYS ASN VAL GLU LYS LEU GLY SEQRES 22 A 511 VAL LYS ALA LEU PHE VAL THR VAL ASP ALA PRO SER LEU SEQRES 23 A 511 GLY GLN ARG GLU LYS ASP MET LYS LEU LYS PHE SER ASN SEQRES 24 A 511 THR LYS ALA GLY PRO LYS ALA MET LYS LYS THR ASN VAL SEQRES 25 A 511 GLU GLU SER GLN GLY ALA SER ARG ALA LEU SER LYS PHE SEQRES 26 A 511 ILE ASP PRO SER LEU THR TRP LYS ASP ILE GLU GLU LEU SEQRES 27 A 511 LYS LYS LYS THR LYS LEU PRO ILE VAL ILE LYS GLY VAL SEQRES 28 A 511 GLN ARG THR GLU ASP VAL ILE LYS ALA ALA GLU ILE GLY SEQRES 29 A 511 VAL SER GLY VAL VAL LEU SER ASN GLN GLY GLY ARG GLN SEQRES 30 A 511 LEU ASP PHE SER ARG ALA PRO ILE GLU VAL LEU ALA GLU SEQRES 31 A 511 THR MET PRO ILE LEU GLU GLN ARG ASN LEU LYS ASP LYS SEQRES 32 A 511 LEU GLU VAL PHE VAL ASP GLY GLY VAL ARG ARG GLY THR SEQRES 33 A 511 ASP VAL LEU LYS ALA LEU CYS LEU GLY ALA LYS GLY VAL SEQRES 34 A 511 GLY LEU GLY ARG PRO PHE LEU TYR ALA ASN SER CYS TYR SEQRES 35 A 511 GLY ARG ASN GLY VAL GLU LYS ALA ILE GLU ILE LEU ARG SEQRES 36 A 511 ASP GLU ILE GLU MET SER MET ARG LEU LEU GLY VAL THR SEQRES 37 A 511 SER ILE ALA GLU LEU LYS PRO ASP LEU LEU ASP LEU SER SEQRES 38 A 511 THR LEU LYS ALA ARG THR VAL GLY VAL PRO ASN ASP VAL SEQRES 39 A 511 LEU TYR ASN GLU VAL TYR GLU GLY PRO THR LEU THR GLU SEQRES 40 A 511 PHE GLU ASP ALA SEQRES 1 B 511 GLU PRO LYS LEU ASP MET ASN LYS GLN LYS ILE SER PRO SEQRES 2 B 511 ALA GLU VAL ALA LYS HIS ASN LYS PRO ASP ASP CYS TRP SEQRES 3 B 511 VAL VAL ILE ASN GLY TYR VAL TYR ASP LEU THR ARG PHE SEQRES 4 B 511 LEU PRO ASN HIS PRO GLY GLY GLN ASP VAL ILE LYS PHE SEQRES 5 B 511 ASN ALA GLY LYS ASP VAL THR ALA ILE PHE GLU PRO LEU SEQRES 6 B 511 HIS ALA PRO ASN VAL ILE ASP LYS TYR ILE ALA PRO GLU SEQRES 7 B 511 LYS LYS LEU GLY PRO LEU GLN GLY SER MET PRO PRO GLU SEQRES 8 B 511 LEU VAL CYS PRO PRO TYR ALA PRO GLY GLU THR LYS GLU SEQRES 9 B 511 ASP ILE ALA ARG LYS GLU GLN LEU LYS SER LEU LEU PRO SEQRES 10 B 511 PRO LEU ASP ASN ILE ILE ASN LEU TYR ASP PHE GLU TYR SEQRES 11 B 511 LEU ALA SER GLN THR LEU THR LYS GLN ALA TRP ALA TYR SEQRES 12 B 511 TYR SER SER GLY ALA ASN ASP GLU VAL THR HIS ARG GLU SEQRES 13 B 511 ASN HIS ASN ALA TYR HIS ARG ILE PHE PHE LYS PRO LYS SEQRES 14 B 511 ILE LEU VAL ASP VAL ARG LYS VAL ASP ILE SER THR ASP SEQRES 15 B 511 MET LEU GLY SER HIS VAL ASP VAL PRO PHE TYR VAL SER SEQRES 16 B 511 ALA THR ALA LEU CYS LYS LEU GLY ASN PRO LEU GLU GLY SEQRES 17 B 511 GLU LYS ASP VAL ALA ARG GLY CYS GLY GLN GLY VAL THR SEQRES 18 B 511 LYS VAL PRO GLN MET ILE SER THR LEU ALA SER CYS SER SEQRES 19 B 511 PRO GLU GLU ILE ILE GLU ALA ALA PRO SER ASP LYS GLN SEQRES 20 B 511 ILE GLN TRP TYR GLN LEU TYR VAL ASN SER ASP ARG LYS SEQRES 21 B 511 ILE THR ASP ASP LEU VAL LYS ASN VAL GLU LYS LEU GLY SEQRES 22 B 511 VAL LYS ALA LEU PHE VAL THR VAL ASP ALA PRO SER LEU SEQRES 23 B 511 GLY GLN ARG GLU LYS ASP MET LYS LEU LYS PHE SER ASN SEQRES 24 B 511 THR LYS ALA GLY PRO LYS ALA MET LYS LYS THR ASN VAL SEQRES 25 B 511 GLU GLU SER GLN GLY ALA SER ARG ALA LEU SER LYS PHE SEQRES 26 B 511 ILE ASP PRO SER LEU THR TRP LYS ASP ILE GLU GLU LEU SEQRES 27 B 511 LYS LYS LYS THR LYS LEU PRO ILE VAL ILE LYS GLY VAL SEQRES 28 B 511 GLN ARG THR GLU ASP VAL ILE LYS ALA ALA GLU ILE GLY SEQRES 29 B 511 VAL SER GLY VAL VAL LEU SER ASN GLN GLY GLY ARG GLN SEQRES 30 B 511 LEU ASP PHE SER ARG ALA PRO ILE GLU VAL LEU ALA GLU SEQRES 31 B 511 THR MET PRO ILE LEU GLU GLN ARG ASN LEU LYS ASP LYS SEQRES 32 B 511 LEU GLU VAL PHE VAL ASP GLY GLY VAL ARG ARG GLY THR SEQRES 33 B 511 ASP VAL LEU LYS ALA LEU CYS LEU GLY ALA LYS GLY VAL SEQRES 34 B 511 GLY LEU GLY ARG PRO PHE LEU TYR ALA ASN SER CYS TYR SEQRES 35 B 511 GLY ARG ASN GLY VAL GLU LYS ALA ILE GLU ILE LEU ARG SEQRES 36 B 511 ASP GLU ILE GLU MET SER MET ARG LEU LEU GLY VAL THR SEQRES 37 B 511 SER ILE ALA GLU LEU LYS PRO ASP LEU LEU ASP LEU SER SEQRES 38 B 511 THR LEU LYS ALA ARG THR VAL GLY VAL PRO ASN ASP VAL SEQRES 39 B 511 LEU TYR ASN GLU VAL TYR GLU GLY PRO THR LEU THR GLU SEQRES 40 B 511 PHE GLU ASP ALA HET HEM A 560 43 HET FMN A 569 31 HET FMN B 570 31 HET PYR B 571 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PYR PYRUVIC ACID HETSYN HEM HEME HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 6 PYR C3 H4 O3 FORMUL 7 HOH *17(H2 O) HELIX 1 1 PHE A 39 HIS A 43 5 5 HELIX 2 2 GLN A 47 LYS A 51 5 5 HELIX 3 3 VAL A 58 GLU A 63 1 6 HELIX 4 4 PRO A 64 HIS A 66 5 3 HELIX 5 5 VAL A 70 ILE A 75 1 6 HELIX 6 6 ILE A 106 LEU A 116 1 11 HELIX 7 7 PRO A 118 ILE A 122 5 5 HELIX 8 8 ASN A 124 LEU A 136 1 13 HELIX 9 9 THR A 137 SER A 146 1 10 HELIX 10 10 GLU A 151 ALA A 160 1 10 HELIX 11 11 TYR A 161 ILE A 164 5 4 HELIX 12 12 LEU A 199 GLY A 203 5 5 HELIX 13 13 GLY A 208 GLY A 219 1 12 HELIX 14 14 SER A 234 GLU A 240 1 7 HELIX 15 15 ASP A 258 LEU A 272 1 15 HELIX 16 16 ARG A 289 PHE A 297 1 9 HELIX 17 17 THR A 331 LYS A 341 1 11 HELIX 18 18 ARG A 353 GLY A 364 1 12 HELIX 19 19 ALA A 383 ARG A 398 1 16 HELIX 20 20 ARG A 414 GLY A 425 1 12 HELIX 21 21 GLY A 432 LEU A 465 1 34 HELIX 22 22 SER A 469 LEU A 473 5 5 HELIX 23 23 LYS A 474 ASP A 476 5 3 HELIX 24 24 LEU A 480 LEU A 483 5 4 HELIX 25 25 ASP A 493 TYR A 500 1 8 HELIX 26 26 ALA B 107 LEU B 116 1 10 HELIX 27 27 ASN B 124 GLN B 134 1 11 HELIX 28 28 THR B 137 SER B 146 1 10 HELIX 29 29 GLU B 151 ALA B 160 1 10 HELIX 30 30 TYR B 161 ILE B 164 5 4 HELIX 31 31 LEU B 199 GLY B 203 5 5 HELIX 32 32 GLY B 208 GLN B 218 1 11 HELIX 33 33 SER B 234 GLU B 240 1 7 HELIX 34 34 ASP B 258 GLY B 273 1 16 HELIX 35 35 ARG B 289 PHE B 297 1 9 HELIX 36 36 ALA B 318 LEU B 322 5 5 HELIX 37 37 THR B 331 LYS B 341 1 11 HELIX 38 38 THR B 354 ILE B 363 1 10 HELIX 39 39 ALA B 383 MET B 392 1 10 HELIX 40 40 ARG B 414 LEU B 424 1 11 HELIX 41 41 GLY B 432 LEU B 465 1 34 HELIX 42 42 SER B 469 LEU B 473 5 5 HELIX 43 43 LYS B 474 ASP B 476 5 3 HELIX 44 44 ASP B 493 TYR B 500 1 8 SHEET 1 A 3 TRP A 26 ILE A 29 0 SHEET 2 A 3 TYR A 32 ASP A 35 -1 O TYR A 34 N VAL A 27 SHEET 3 A 3 LYS A 80 PRO A 83 -1 O LEU A 81 N VAL A 33 SHEET 1 B 2 PHE A 165 PHE A 166 0 SHEET 2 B 2 LEU A 478 ASP A 479 -1 O ASP A 479 N PHE A 165 SHEET 1 C 2 THR A 181 MET A 183 0 SHEET 2 C 2 SER A 186 VAL A 188 -1 O SER A 186 N MET A 183 SHEET 1 D 2 PHE A 192 VAL A 194 0 SHEET 2 D 2 VAL A 429 LEU A 431 1 O VAL A 429 N TYR A 193 SHEET 1 E 6 GLN A 225 ILE A 227 0 SHEET 2 E 6 GLN A 249 LEU A 253 1 O TRP A 250 N GLN A 225 SHEET 3 E 6 ALA A 276 THR A 280 1 O PHE A 278 N TYR A 251 SHEET 4 E 6 ILE A 346 LYS A 349 1 O VAL A 347 N LEU A 277 SHEET 5 E 6 GLY A 367 LEU A 370 1 O VAL A 369 N ILE A 348 SHEET 6 E 6 GLU A 405 VAL A 408 1 O PHE A 407 N VAL A 368 SHEET 1 F 2 ARG A 486 THR A 487 0 SHEET 2 F 2 VAL B 488 GLY B 489 1 O VAL B 488 N THR A 487 SHEET 1 G 2 PHE B 165 PHE B 166 0 SHEET 2 G 2 LEU B 478 ASP B 479 -1 O ASP B 479 N PHE B 165 SHEET 1 H 2 THR B 181 MET B 183 0 SHEET 2 H 2 SER B 186 VAL B 188 -1 O VAL B 188 N THR B 181 SHEET 1 I 8 PHE B 192 VAL B 194 0 SHEET 2 I 8 GLY B 428 LEU B 431 1 O VAL B 429 N TYR B 193 SHEET 3 I 8 GLU B 405 ASP B 409 1 N VAL B 408 O GLY B 430 SHEET 4 I 8 GLY B 367 LEU B 370 1 N LEU B 370 O PHE B 407 SHEET 5 I 8 ILE B 346 VAL B 351 1 N VAL B 351 O VAL B 369 SHEET 6 I 8 ALA B 276 VAL B 279 1 N VAL B 279 O LYS B 349 SHEET 7 I 8 TRP B 250 LEU B 253 1 N TYR B 251 O PHE B 278 SHEET 8 I 8 MET B 226 SER B 228 1 N ILE B 227 O GLN B 252 LINK NE2 HIS A 43 FE HEM A 560 1555 1555 2.17 LINK NE2 HIS A 66 FE HEM A 560 1555 1555 1.79 SITE 1 AC1 12 PHE A 39 HIS A 43 PRO A 44 GLY A 45 SITE 2 AC1 12 ILE A 50 HIS A 66 TYR A 74 TYR A 97 SITE 3 AC1 12 GLN A 139 TYR A 143 LEU A 199 LEU A 230 SITE 1 AC2 21 TYR A 144 SER A 195 ALA A 196 THR A 197 SITE 2 AC2 21 ALA A 198 SER A 228 GLN A 252 TYR A 254 SITE 3 AC2 21 THR A 280 LYS A 349 SER A 371 GLN A 373 SITE 4 AC2 21 GLY A 374 ARG A 376 ASP A 409 GLY A 410 SITE 5 AC2 21 GLY A 411 ARG A 413 LEU A 431 GLY A 432 SITE 6 AC2 21 ARG A 433 SITE 1 AC3 22 TYR B 144 SER B 195 ALA B 196 THR B 197 SITE 2 AC3 22 ALA B 198 SER B 228 GLN B 252 TYR B 254 SITE 3 AC3 22 THR B 280 LYS B 349 SER B 371 GLY B 374 SITE 4 AC3 22 ARG B 376 ASP B 409 GLY B 410 GLY B 411 SITE 5 AC3 22 ARG B 413 LEU B 431 GLY B 432 ARG B 433 SITE 6 AC3 22 LEU B 436 PYR B 571 SITE 1 AC4 6 TYR B 143 ALA B 198 TYR B 254 GLN B 373 SITE 2 AC4 6 ARG B 376 FMN B 570 CRYST1 163.689 163.689 112.021 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006109 0.003527 0.000000 0.00000 SCALE2 0.000000 0.007054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008927 0.00000