HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-FEB-07 2OZZ TITLE CRYSTAL STRUCTURE OF YHFZ FROM SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YHFZ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 42897; SOURCE 4 STRAIN: 2457T, 301; SOURCE 5 GENE: YHFZ, SF3401, S_4361; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MCSG19 KEYWDS ALPHA-BETA STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.BOROVILOS,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 18-OCT-17 2OZZ 1 REMARK REVDAT 2 24-FEB-09 2OZZ 1 VERSN REVDAT 1 27-MAR-07 2OZZ 0 JRNL AUTH Y.KIM,M.BOROVILOS,S.CLANCY,A.JOACHIMIAK JRNL TITL STRUCTURE OF YHFZ FROM SHIGELLA FLEXNERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 20590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.441 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.521 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3676 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5009 ; 1.570 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 6.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;39.476 ;24.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;19.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.773 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2849 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1779 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2352 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3682 ; 1.452 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 2.179 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1327 ; 3.183 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROGRAM CNS 1.2 HAS ALSO BEEN USED IN REMARK 3 REFINEMENT REMARK 4 REMARK 4 2OZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 37.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.60100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXCD, SHELXD, MLPHARE, SOLVE, RESOLVE, REMARK 200 PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.6, 20 % PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.63500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.09600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.09600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.63500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 300 THE BIOLOGICAL UNIT ASSEMBLY SHOWN IN REMARK 350 IS REMARK 300 PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED REMARK 300 ON THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 161 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 HIS B 9 REMARK 465 VAL B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 131 REMARK 465 SER B 132 REMARK 465 VAL B 161 REMARK 465 ALA B 162 REMARK 465 GLU B 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 141 O HOH A 277 2.11 REMARK 500 O4 SO4 A 229 O HOH A 305 2.14 REMARK 500 O HOH A 248 O HOH A 296 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 330 O HOH A 343 4566 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 201 CG GLN B 201 CD 0.335 REMARK 500 LYS B 209 CG LYS B 209 CD 0.238 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 181 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 38.01 -73.77 REMARK 500 ASN A 13 -85.43 -82.48 REMARK 500 TYR A 93 -59.37 -120.20 REMARK 500 LYS A 110 -31.06 -131.12 REMARK 500 ASP A 131 38.26 -88.82 REMARK 500 ASP A 133 77.74 -64.83 REMARK 500 TYR A 141 -39.04 -25.00 REMARK 500 GLU A 163 -35.72 -30.35 REMARK 500 THR A 177 87.32 -58.79 REMARK 500 ASP A 178 -50.82 77.50 REMARK 500 ASN B 13 -81.03 -61.11 REMARK 500 ASN B 14 113.35 -173.45 REMARK 500 ASP B 39 114.52 -31.07 REMARK 500 PRO B 42 99.92 -55.84 REMARK 500 LYS B 103 118.79 -39.76 REMARK 500 ASN B 108 51.05 -112.20 REMARK 500 GLU B 165 45.75 -103.33 REMARK 500 THR B 177 -33.73 -139.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 177 ASP A 178 146.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC28298 RELATED DB: TARGETDB DBREF 2OZZ A 1 228 UNP Q83JA6 Q83JA6_SHIFL 1 228 DBREF 2OZZ B 1 228 UNP Q83JA6 Q83JA6_SHIFL 1 228 SEQADV 2OZZ SER A -2 UNP Q83JA6 CLONING ARTIFACT SEQADV 2OZZ ASN A -1 UNP Q83JA6 CLONING ARTIFACT SEQADV 2OZZ ALA A 0 UNP Q83JA6 CLONING ARTIFACT SEQADV 2OZZ MSE A 1 UNP Q83JA6 MET 1 MODIFIED RESIDUE SEQADV 2OZZ MSE A 19 UNP Q83JA6 MET 19 MODIFIED RESIDUE SEQADV 2OZZ MSE A 48 UNP Q83JA6 MET 48 MODIFIED RESIDUE SEQADV 2OZZ MSE A 65 UNP Q83JA6 MET 65 MODIFIED RESIDUE SEQADV 2OZZ MSE A 124 UNP Q83JA6 MET 124 MODIFIED RESIDUE SEQADV 2OZZ MSE A 168 UNP Q83JA6 MET 168 MODIFIED RESIDUE SEQADV 2OZZ MSE A 199 UNP Q83JA6 MET 199 MODIFIED RESIDUE SEQADV 2OZZ SER B -2 UNP Q83JA6 CLONING ARTIFACT SEQADV 2OZZ ASN B -1 UNP Q83JA6 CLONING ARTIFACT SEQADV 2OZZ ALA B 0 UNP Q83JA6 CLONING ARTIFACT SEQADV 2OZZ MSE B 1 UNP Q83JA6 MET 1 MODIFIED RESIDUE SEQADV 2OZZ MSE B 19 UNP Q83JA6 MET 19 MODIFIED RESIDUE SEQADV 2OZZ MSE B 48 UNP Q83JA6 MET 48 MODIFIED RESIDUE SEQADV 2OZZ MSE B 65 UNP Q83JA6 MET 65 MODIFIED RESIDUE SEQADV 2OZZ MSE B 124 UNP Q83JA6 MET 124 MODIFIED RESIDUE SEQADV 2OZZ MSE B 168 UNP Q83JA6 MET 168 MODIFIED RESIDUE SEQADV 2OZZ MSE B 199 UNP Q83JA6 MET 199 MODIFIED RESIDUE SEQRES 1 A 231 SER ASN ALA MSE ASP ASN LYS ALA LEU LEU SER HIS VAL SEQRES 2 A 231 ASP ILE ASN ASN VAL VAL CYS ALA MSE PRO LEU PRO TYR SEQRES 3 A 231 THR ARG LEU TYR GLU GLY LEU ALA SER GLY LEU LYS ALA SEQRES 4 A 231 GLN PHE ASP GLY ILE PRO PHE TYR TYR ALA HIS MSE ARG SEQRES 5 A 231 GLY ALA ASP ILE ARG VAL GLU CYS LEU LEU ASN GLY VAL SEQRES 6 A 231 TYR ASP MSE ALA VAL VAL SER ARG LEU ALA ALA GLU SER SEQRES 7 A 231 TYR LEU SER GLN ASN ASN LEU CYS ILE ALA LEU GLU LEU SEQRES 8 A 231 GLY PRO HIS THR TYR VAL GLY GLU HIS GLN LEU ILE CYS SEQRES 9 A 231 ARG LYS GLY GLU SER GLY ASN VAL LYS ARG VAL GLY LEU SEQRES 10 A 231 ASP SER ARG SER ALA ASP GLN LYS ILE MSE THR ASP VAL SEQRES 11 A 231 PHE PHE GLY ASP SER ASP VAL GLU ARG VAL ASP LEU SER SEQRES 12 A 231 TYR HIS GLU SER LEU GLN ARG ILE VAL LYS GLY ASP VAL SEQRES 13 A 231 ASP ALA VAL ILE TRP ASN VAL VAL ALA GLU ASN GLU LEU SEQRES 14 A 231 THR MSE LEU GLY LEU GLU ALA THR PRO LEU THR ASP ASP SEQRES 15 A 231 PRO ARG PHE LEU GLN ALA THR GLU ALA VAL VAL LEU THR SEQRES 16 A 231 ARG VAL ASP ASP TYR PRO MSE GLN GLN LEU LEU ARG ALA SEQRES 17 A 231 VAL VAL ASP LYS HIS ALA LEU LEU ALA HIS GLN GLN ARG SEQRES 18 A 231 VAL VAL SER GLY GLU GLN GLU PRO SER TYR SEQRES 1 B 231 SER ASN ALA MSE ASP ASN LYS ALA LEU LEU SER HIS VAL SEQRES 2 B 231 ASP ILE ASN ASN VAL VAL CYS ALA MSE PRO LEU PRO TYR SEQRES 3 B 231 THR ARG LEU TYR GLU GLY LEU ALA SER GLY LEU LYS ALA SEQRES 4 B 231 GLN PHE ASP GLY ILE PRO PHE TYR TYR ALA HIS MSE ARG SEQRES 5 B 231 GLY ALA ASP ILE ARG VAL GLU CYS LEU LEU ASN GLY VAL SEQRES 6 B 231 TYR ASP MSE ALA VAL VAL SER ARG LEU ALA ALA GLU SER SEQRES 7 B 231 TYR LEU SER GLN ASN ASN LEU CYS ILE ALA LEU GLU LEU SEQRES 8 B 231 GLY PRO HIS THR TYR VAL GLY GLU HIS GLN LEU ILE CYS SEQRES 9 B 231 ARG LYS GLY GLU SER GLY ASN VAL LYS ARG VAL GLY LEU SEQRES 10 B 231 ASP SER ARG SER ALA ASP GLN LYS ILE MSE THR ASP VAL SEQRES 11 B 231 PHE PHE GLY ASP SER ASP VAL GLU ARG VAL ASP LEU SER SEQRES 12 B 231 TYR HIS GLU SER LEU GLN ARG ILE VAL LYS GLY ASP VAL SEQRES 13 B 231 ASP ALA VAL ILE TRP ASN VAL VAL ALA GLU ASN GLU LEU SEQRES 14 B 231 THR MSE LEU GLY LEU GLU ALA THR PRO LEU THR ASP ASP SEQRES 15 B 231 PRO ARG PHE LEU GLN ALA THR GLU ALA VAL VAL LEU THR SEQRES 16 B 231 ARG VAL ASP ASP TYR PRO MSE GLN GLN LEU LEU ARG ALA SEQRES 17 B 231 VAL VAL ASP LYS HIS ALA LEU LEU ALA HIS GLN GLN ARG SEQRES 18 B 231 VAL VAL SER GLY GLU GLN GLU PRO SER TYR MODRES 2OZZ MSE A 1 MET SELENOMETHIONINE MODRES 2OZZ MSE A 19 MET SELENOMETHIONINE MODRES 2OZZ MSE A 48 MET SELENOMETHIONINE MODRES 2OZZ MSE A 65 MET SELENOMETHIONINE MODRES 2OZZ MSE A 124 MET SELENOMETHIONINE MODRES 2OZZ MSE A 168 MET SELENOMETHIONINE MODRES 2OZZ MSE A 199 MET SELENOMETHIONINE MODRES 2OZZ MSE B 19 MET SELENOMETHIONINE MODRES 2OZZ MSE B 48 MET SELENOMETHIONINE MODRES 2OZZ MSE B 65 MET SELENOMETHIONINE MODRES 2OZZ MSE B 124 MET SELENOMETHIONINE MODRES 2OZZ MSE B 168 MET SELENOMETHIONINE MODRES 2OZZ MSE B 199 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 48 8 HET MSE A 65 8 HET MSE A 124 8 HET MSE A 168 8 HET MSE A 199 8 HET MSE B 19 8 HET MSE B 48 8 HET MSE B 65 8 HET MSE B 124 8 HET MSE B 168 8 HET MSE B 199 8 HET SO4 A 229 5 HET SO4 A 230 5 HET SO4 A 231 5 HET SO4 B 229 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *166(H2 O) HELIX 1 1 SER A -2 SER A 8 1 11 HELIX 2 2 THR A 24 GLN A 37 1 14 HELIX 3 3 GLY A 50 ASN A 60 1 11 HELIX 4 4 ARG A 70 ASN A 80 1 11 HELIX 5 5 GLU A 105 VAL A 109 5 5 HELIX 6 6 SER A 118 GLY A 130 1 13 HELIX 7 7 SER A 140 GLY A 151 1 12 HELIX 8 8 ALA A 162 LEU A 169 1 8 HELIX 9 9 PRO A 180 ALA A 185 1 6 HELIX 10 10 ASP A 196 VAL A 207 1 12 HELIX 11 11 ASP A 208 SER A 221 1 14 HELIX 12 12 THR B 24 ALA B 36 1 13 HELIX 13 13 GLY B 50 ASN B 60 1 11 HELIX 14 14 ARG B 70 GLU B 74 1 5 HELIX 15 15 GLU B 105 VAL B 109 5 5 HELIX 16 16 SER B 118 GLY B 130 1 13 HELIX 17 17 SER B 140 GLY B 151 1 12 HELIX 18 18 LEU B 166 LEU B 169 5 4 HELIX 19 19 ASP B 179 ALA B 185 1 7 HELIX 20 20 ASP B 196 VAL B 207 1 12 HELIX 21 21 ASP B 208 SER B 221 1 14 SHEET 1 A 5 PHE A 43 HIS A 47 0 SHEET 2 A 5 VAL A 15 MSE A 19 1 N CYS A 17 O TYR A 44 SHEET 3 A 5 MSE A 65 SER A 69 1 O VAL A 67 N ALA A 18 SHEET 4 A 5 ALA A 188 ARG A 193 -1 O VAL A 189 N VAL A 68 SHEET 5 A 5 LEU A 82 GLU A 87 -1 N CYS A 83 O THR A 192 SHEET 1 B 5 GLU A 135 ASP A 138 0 SHEET 2 B 5 ARG A 111 LEU A 114 1 N VAL A 112 O GLU A 135 SHEET 3 B 5 ALA A 155 ASN A 159 1 O ALA A 155 N GLY A 113 SHEET 4 B 5 HIS A 97 ARG A 102 -1 N GLN A 98 O TRP A 158 SHEET 5 B 5 LEU A 171 PRO A 175 -1 O THR A 174 N LEU A 99 SHEET 1 C 5 PHE B 43 HIS B 47 0 SHEET 2 C 5 VAL B 15 MSE B 19 1 N CYS B 17 O TYR B 44 SHEET 3 C 5 MSE B 65 SER B 69 1 O VAL B 67 N ALA B 18 SHEET 4 C 5 ALA B 188 ARG B 193 -1 O LEU B 191 N ALA B 66 SHEET 5 C 5 LEU B 82 GLU B 87 -1 N CYS B 83 O THR B 192 SHEET 1 D 5 GLU B 135 ASP B 138 0 SHEET 2 D 5 ARG B 111 LEU B 114 1 N VAL B 112 O GLU B 135 SHEET 3 D 5 ALA B 155 ASN B 159 1 O ALA B 155 N GLY B 113 SHEET 4 D 5 HIS B 97 ARG B 102 -1 N GLN B 98 O TRP B 158 SHEET 5 D 5 LEU B 171 PRO B 175 -1 O GLU B 172 N CYS B 101 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C ALA A 18 N MSE A 19 1555 1555 1.32 LINK C MSE A 19 N PRO A 20 1555 1555 1.34 LINK C HIS A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N ARG A 49 1555 1555 1.33 LINK C ASP A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N ALA A 66 1555 1555 1.33 LINK C ILE A 123 N MSE A 124 1555 1555 1.32 LINK C MSE A 124 N THR A 125 1555 1555 1.34 LINK C THR A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N LEU A 169 1555 1555 1.33 LINK C PRO A 198 N MSE A 199 1555 1555 1.34 LINK C MSE A 199 N GLN A 200 1555 1555 1.34 LINK C ALA B 18 N MSE B 19 1555 1555 1.33 LINK C MSE B 19 N PRO B 20 1555 1555 1.35 LINK C HIS B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N BARG B 49 1555 1555 1.33 LINK C MSE B 48 N AARG B 49 1555 1555 1.33 LINK C ASP B 64 N MSE B 65 1555 1555 1.34 LINK C MSE B 65 N ALA B 66 1555 1555 1.34 LINK C ILE B 123 N MSE B 124 1555 1555 1.34 LINK C MSE B 124 N THR B 125 1555 1555 1.33 LINK C THR B 167 N MSE B 168 1555 1555 1.33 LINK C MSE B 168 N LEU B 169 1555 1555 1.33 LINK C PRO B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N GLN B 200 1555 1555 1.34 SITE 1 AC1 9 MSE A 48 ARG A 49 GLY A 50 ALA A 51 SITE 2 AC1 9 ARG A 54 HOH A 250 HOH A 254 HOH A 303 SITE 3 AC1 9 HOH A 305 SITE 1 AC2 7 ARG B 49 GLY B 50 ALA B 51 ARG B 54 SITE 2 AC2 7 TYR B 93 HOH B 230 HOH B 247 SITE 1 AC3 5 ALA A 36 GLN A 37 HIS A 215 ARG A 218 SITE 2 AC3 5 HOH A 272 SITE 1 AC4 6 LEU A 59 ASN A 80 ASN A 81 LYS A 209 SITE 2 AC4 6 HOH A 308 HOH A 309 CRYST1 47.270 62.550 170.192 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005876 0.00000