HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-FEB-07 2P0O TITLE CRYSTAL STRUCTURE OF A CONSERVED PROTEIN FROM LOCUS EF_2437 IN TITLE 2 ENTEROCOCCUS FAECALIS WITH AN UNKNOWN FUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN DUF871; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 ATCC: 700802; SOURCE 6 GENE: EF_2437; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ENTEROCOCCUS FAECALIS, STRUCTURAL GENOMICS, TIM BARREL, PF05913, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,M.ZHOU,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2P0O 1 VERSN REVDAT 2 24-FEB-09 2P0O 1 VERSN REVDAT 1 27-MAR-07 2P0O 0 JRNL AUTH M.E.CUFF,M.ZHOU,S.MOY,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A CONSERVED PROTEIN FROM LOCUS EF_2437 IN JRNL TITL 2 ENTEROCOCCUS FAECALIS WITH AN UNKNOWN FUNCTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 22760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 57.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.22000 REMARK 3 B22 (A**2) : -2.22000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : -1.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2844 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3850 ; 1.480 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 5.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;37.946 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;17.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2139 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1261 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1955 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.100 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 0.722 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2833 ; 1.355 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 2.363 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1015 ; 3.655 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 67.9748 73.5352 34.8956 REMARK 3 T TENSOR REMARK 3 T11: -0.1852 T22: -0.1653 REMARK 3 T33: -0.1436 T12: -0.0305 REMARK 3 T13: 0.0221 T23: 0.1295 REMARK 3 L TENSOR REMARK 3 L11: 3.1874 L22: 2.4951 REMARK 3 L33: 2.3037 L12: 1.0269 REMARK 3 L13: 0.2233 L23: -0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.2096 S12: 0.5355 S13: 0.4058 REMARK 3 S21: -0.4009 S22: 0.2942 S23: 0.3634 REMARK 3 S31: 0.0802 S32: -0.3297 S33: -0.0847 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 239 REMARK 3 RESIDUE RANGE : A 359 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 88.6640 84.8559 46.0679 REMARK 3 T TENSOR REMARK 3 T11: -0.1744 T22: -0.2922 REMARK 3 T33: 0.0531 T12: 0.0001 REMARK 3 T13: 0.0449 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.9568 L22: 3.7206 REMARK 3 L33: 4.7640 L12: 0.3743 REMARK 3 L13: -0.8303 L23: 0.3200 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: -0.1475 S13: 0.9902 REMARK 3 S21: 0.0819 S22: 0.0787 S23: -0.1907 REMARK 3 S31: -0.4039 S32: 0.3640 S33: -0.0375 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 101.7877 70.9240 55.3493 REMARK 3 T TENSOR REMARK 3 T11: -0.0806 T22: -0.0907 REMARK 3 T33: -0.1495 T12: -0.0021 REMARK 3 T13: 0.0586 T23: -0.0709 REMARK 3 L TENSOR REMARK 3 L11: 3.9938 L22: 3.4994 REMARK 3 L33: 1.7205 L12: -2.2560 REMARK 3 L13: 0.5465 L23: 0.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.2325 S13: 0.2009 REMARK 3 S21: 0.1754 S22: 0.2059 S23: -0.2118 REMARK 3 S31: -0.1389 S32: 0.1290 S33: -0.1963 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 33.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 10.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38400 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHELXE, AUTOSHARP, ARP/WARP, CCP4, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.88200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.88200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.88200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. THE ASSEMBLY REMARK 300 SHOWN IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF REMARK 300 PROTEIN INTERFACES BASED ON THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 GLU A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 THR A 42 REMARK 465 SER A 43 REMARK 465 SER A 275 REMARK 465 ARG A 276 REMARK 465 THR A 277 REMARK 465 SER A 278 REMARK 465 GLU A 279 REMARK 465 MSE A 280 REMARK 465 PHE A 281 REMARK 465 ARG A 282 REMARK 465 LYS A 283 REMARK 465 ASP A 284 REMARK 465 GLU A 285 REMARK 465 ILE A 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 83 CG GLU A 83 CD 0.214 REMARK 500 GLU A 83 CD GLU A 83 OE1 0.106 REMARK 500 GLU A 83 CD GLU A 83 OE2 0.193 REMARK 500 GLU A 87 CD GLU A 87 OE1 0.075 REMARK 500 HIS A 109 CG HIS A 109 CD2 0.096 REMARK 500 HIS A 109 CE1 HIS A 109 NE2 0.164 REMARK 500 ASN A 369 C ASN A 369 O 0.309 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 83 OE1 - CD - OE2 ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 96 -40.82 -131.97 REMARK 500 GLU A 149 6.94 84.26 REMARK 500 LEU A 189 71.89 -118.83 REMARK 500 GLU A 292 -102.71 -123.22 REMARK 500 ALA A 296 154.66 -49.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 255 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 480 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A 555 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 558 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 5.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 371 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 O REMARK 620 2 MSE A 208 O 102.1 REMARK 620 3 VAL A 213 O 94.8 127.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 371 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC29416 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE ELECTRON DENSITY SUGGESTS ASP, REMARK 999 NOT GLU. GLU SIDECHAIN IS TOO BIG TO FIT THE DENSITY. THE REMARK 999 CODONS FOR THESE RESIDUES DIFFER ONLY IN THE 3RD BASE. REMARK 999 THIS COULD BE EITHER A CLONING OR SEQUENCING ERROR. DBREF 2P0O A 1 369 UNP Q831R3 Q831R3_ENTFA 1 369 SEQADV 2P0O SER A -2 UNP Q831R3 CLONING ARTIFACT SEQADV 2P0O ASN A -1 UNP Q831R3 CLONING ARTIFACT SEQADV 2P0O ALA A 0 UNP Q831R3 CLONING ARTIFACT SEQADV 2P0O MSE A 1 UNP Q831R3 MET 1 MODIFIED RESIDUE SEQADV 2P0O MSE A 23 UNP Q831R3 MET 23 MODIFIED RESIDUE SEQADV 2P0O MSE A 61 UNP Q831R3 MET 61 MODIFIED RESIDUE SEQADV 2P0O MSE A 64 UNP Q831R3 MET 64 MODIFIED RESIDUE SEQADV 2P0O MSE A 95 UNP Q831R3 MET 95 MODIFIED RESIDUE SEQADV 2P0O MSE A 104 UNP Q831R3 MET 104 MODIFIED RESIDUE SEQADV 2P0O MSE A 208 UNP Q831R3 MET 208 MODIFIED RESIDUE SEQADV 2P0O MSE A 228 UNP Q831R3 MET 228 MODIFIED RESIDUE SEQADV 2P0O MSE A 280 UNP Q831R3 MET 280 MODIFIED RESIDUE SEQADV 2P0O MSE A 313 UNP Q831R3 MET 313 MODIFIED RESIDUE SEQADV 2P0O ASP A 337 UNP Q831R3 GLU 337 SEE REMARK 999 SEQRES 1 A 372 SER ASN ALA MSE TYR GLY ILE SER VAL PHE LEU GLY GLU SEQRES 2 A 372 GLU ILE THR ASN ASP THR ILE ILE TYR ILE LYS LYS MSE SEQRES 3 A 372 LYS ALA LEU GLY PHE ASP GLY ILE PHE THR SER LEU HIS SEQRES 4 A 372 ILE PRO GLU ASP ASP THR SER LEU TYR ARG GLN ARG LEU SEQRES 5 A 372 THR ASP LEU GLY ALA ILE ALA LYS ALA GLU LYS MSE LYS SEQRES 6 A 372 ILE MSE VAL ASP ILE SER GLY GLU ALA LEU LYS ARG ALA SEQRES 7 A 372 GLY PHE SER PHE ASP GLU LEU GLU PRO LEU ILE GLU LEU SEQRES 8 A 372 GLY VAL THR GLY LEU ARG MSE ASP TYR GLY ILE THR ILE SEQRES 9 A 372 GLU GLN MSE ALA HIS ALA SER HIS LYS ILE ASP ILE GLY SEQRES 10 A 372 LEU ASN ALA SER THR ILE THR LEU GLU GLU VAL ALA GLU SEQRES 11 A 372 LEU LYS ALA HIS GLN ALA ASP PHE SER ARG LEU GLU ALA SEQRES 12 A 372 TRP HIS ASN TYR TYR PRO ARG PRO GLU THR GLY ILE GLY SEQRES 13 A 372 THR THR PHE PHE ASN GLU LYS ASN ARG TRP LEU LYS GLU SEQRES 14 A 372 LEU GLY LEU GLN VAL PHE THR PHE VAL PRO GLY ASP GLY SEQRES 15 A 372 GLN THR ARG GLY PRO ILE PHE ALA GLY LEU PRO THR LEU SEQRES 16 A 372 GLU LYS HIS ARG GLY GLN ASN PRO PHE ALA ALA ALA VAL SEQRES 17 A 372 GLY LEU MSE ALA ASP PRO TYR VAL ASP ALA VAL TYR ILE SEQRES 18 A 372 GLY ASP PRO THR ILE SER GLU ARG THR MSE ALA GLN PHE SEQRES 19 A 372 GLY TYR TYR HIS GLN THR ASN GLN PHE LEU LEU GLU VAL SEQRES 20 A 372 ALA PRO SER GLU SER ARG TYR LEU LYS ARG ILE LEU GLY SEQRES 21 A 372 THR HIS THR ASN ARG LEU ASP ALA ALA ARG ASP VAL LEU SEQRES 22 A 372 ARG SER GLU LEU SER ARG THR SER GLU MSE PHE ARG LYS SEQRES 23 A 372 ASP GLU ILE ALA THR ILE GLU SER GLU GLN THR GLU ALA SEQRES 24 A 372 ARG PRO VAL GLY THR VAL THR ILE ASP ASN GLU LYS TYR SEQRES 25 A 372 GLY ARG TYR MSE GLY GLU ILE GLN VAL THR LEU VAL ASP SEQRES 26 A 372 LEU PRO LYS ASP GLU LYS VAL ASN THR ILE THR ARG ILE SEQRES 27 A 372 ILE ASP LYS ASP GLN THR ILE LEU PRO LEU ILE LYS ALA SEQRES 28 A 372 GLY ASN GLN PHE THR LEU VAL THR GLU GLY THR ILE GLU SEQRES 29 A 372 ASN GLU PHE ARG LYS LEU ASN ASN MODRES 2P0O MSE A 1 MET SELENOMETHIONINE MODRES 2P0O MSE A 23 MET SELENOMETHIONINE MODRES 2P0O MSE A 61 MET SELENOMETHIONINE MODRES 2P0O MSE A 64 MET SELENOMETHIONINE MODRES 2P0O MSE A 95 MET SELENOMETHIONINE MODRES 2P0O MSE A 104 MET SELENOMETHIONINE MODRES 2P0O MSE A 208 MET SELENOMETHIONINE MODRES 2P0O MSE A 228 MET SELENOMETHIONINE MODRES 2P0O MSE A 313 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 23 8 HET MSE A 61 8 HET MSE A 64 8 HET MSE A 95 8 HET MSE A 104 8 HET MSE A 208 8 HET MSE A 228 8 HET MSE A 313 8 HET CL A 370 1 HET NA A 371 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 NA NA 1+ FORMUL 4 HOH *195(H2 O) HELIX 1 1 THR A 13 LEU A 26 1 14 HELIX 2 2 LEU A 44 LYS A 60 1 17 HELIX 3 3 SER A 68 ARG A 74 1 7 HELIX 4 4 LEU A 82 GLY A 89 1 8 HELIX 5 5 THR A 100 SER A 108 1 9 HELIX 6 6 THR A 121 HIS A 131 1 11 HELIX 7 7 ASP A 134 SER A 136 5 3 HELIX 8 8 GLY A 153 LEU A 167 1 15 HELIX 9 9 LEU A 192 ARG A 196 5 5 HELIX 10 10 ASN A 199 ASP A 210 1 12 HELIX 11 11 SER A 224 ASN A 238 1 15 HELIX 12 12 TYR A 251 LEU A 256 1 6 HELIX 13 13 GLU A 307 MSE A 313 5 7 HELIX 14 14 ILE A 336 ILE A 346 5 11 HELIX 15 15 THR A 359 ASN A 368 1 10 SHEET 1 A 9 MSE A 1 SER A 5 0 SHEET 2 A 9 GLY A 30 LEU A 35 1 O GLY A 30 N ILE A 4 SHEET 3 A 9 LYS A 62 ILE A 67 1 O ASP A 66 N THR A 33 SHEET 4 A 9 GLY A 92 MSE A 95 1 O ARG A 94 N VAL A 65 SHEET 5 A 9 ASP A 112 ASN A 116 1 O GLY A 114 N LEU A 93 SHEET 6 A 9 LEU A 138 TRP A 141 1 O GLU A 139 N LEU A 115 SHEET 7 A 9 GLN A 170 VAL A 175 1 O GLN A 170 N ALA A 140 SHEET 8 A 9 ALA A 215 ILE A 218 1 O TYR A 217 N VAL A 175 SHEET 9 A 9 MSE A 1 SER A 5 1 N GLY A 3 O VAL A 216 SHEET 1 B 3 GLN A 239 VAL A 244 0 SHEET 2 B 3 GLN A 351 THR A 356 1 O THR A 353 N LEU A 242 SHEET 3 B 3 GLY A 257 THR A 260 -1 N HIS A 259 O PHE A 352 SHEET 1 C 4 VAL A 269 SER A 272 0 SHEET 2 C 4 ILE A 316 THR A 319 -1 O VAL A 318 N LEU A 270 SHEET 3 C 4 THR A 301 ASP A 305 -1 N THR A 303 O GLN A 317 SHEET 4 C 4 VAL A 329 ARG A 334 -1 O THR A 333 N VAL A 302 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N TYR A 2 1555 1555 1.34 LINK C LYS A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N LYS A 24 1555 1555 1.33 LINK C LYS A 60 N MSE A 61 1555 1555 1.32 LINK C MSE A 61 N LYS A 62 1555 1555 1.32 LINK C ILE A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N VAL A 65 1555 1555 1.33 LINK C ARG A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N ASP A 96 1555 1555 1.31 LINK C GLN A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N ALA A 105 1555 1555 1.33 LINK C LEU A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N ALA A 209 1555 1555 1.33 LINK C THR A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N ALA A 229 1555 1555 1.33 LINK C TYR A 312 N MSE A 313 1555 1555 1.34 LINK C MSE A 313 N GLY A 314 1555 1555 1.33 LINK NA NA A 371 O ASP A 210 1555 1555 2.27 LINK NA NA A 371 O MSE A 208 1555 1555 2.39 LINK NA NA A 371 O VAL A 213 1555 1555 2.49 CISPEP 1 GLY A 183 PRO A 184 0 1.93 SITE 1 AC1 2 THR A 154 ARG A 267 SITE 1 AC2 3 MSE A 208 ASP A 210 VAL A 213 CRYST1 86.244 86.244 109.764 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011595 0.006694 0.000000 0.00000 SCALE2 0.000000 0.013389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009110 0.00000