HEADER TRANSPORT PROTEIN 06-MAR-07 2P22 TITLE STRUCTURE OF THE YEAST ESCRT-I HETEROTETRAMER CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR PROTEIN STP22 OF TEMPERATURE-SENSITIVE ALPHA- COMPND 3 FACTOR RECEPTOR AND ARGININE PERMEASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: VPS23 (215-385); COMPND 6 SYNONYM: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 23; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: VPS28N-TERMINAL DOMAIN (1-118); COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PROTEIN SRN2; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: VPS37 (22-213); COMPND 18 SYNONYM: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: HYPOTHETICAL 12.0 KDA PROTEIN IN ADE3-SER2 INTERGENIC COMPND 23 REGION; COMPND 24 CHAIN: D; COMPND 25 FRAGMENT: MVB12 (4-81); COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: VPS23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: POLYCYSTRONIC; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: VPT28; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21DE3 RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: POLYCYSTRONIC; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 23 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 24 ORGANISM_TAXID: 4932; SOURCE 25 GENE: VPS37; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21DE3 RIL; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: POLYCYSTRONIC; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 33 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 34 ORGANISM_TAXID: 4932; SOURCE 35 GENE: MVB12; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: BL21DE3 RIL; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: POLYCYSTRONIC; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PST39 KEYWDS ENDOSOME, TRAFFICKING COMPLEX, VPS23, VPS28, VPS37, MVB12, VACUOLAR KEYWDS 2 PROTEIN SORTING, ESCRT PROTEIN COMPLEXES, ENDOSOMAL SORTING COMPLEX KEYWDS 3 REQUIRED FOR TRANSPORT, ESCRT-I, UBIQUITIN, TSG101, TRANSPORT KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KOSTELANSKY,J.H.HURLEY REVDAT 8 21-FEB-24 2P22 1 REMARK REVDAT 7 20-OCT-21 2P22 1 REMARK SEQADV REVDAT 6 15-APR-20 2P22 1 REMARK SEQADV REVDAT 5 24-JAN-18 2P22 1 AUTHOR REVDAT 4 29-NOV-17 2P22 1 REMARK REVDAT 3 24-JUN-15 2P22 1 REMARK VERSN REVDAT 2 24-FEB-09 2P22 1 VERSN REVDAT 1 05-JUN-07 2P22 0 JRNL AUTH M.S.KOSTELANSKY,C.SCHLUTER,Y.Y.TAM,S.LEE,R.GHIRLANDO, JRNL AUTH 2 B.BEACH,E.CONIBEAR,J.H.HURLEY JRNL TITL MOLECULAR ARCHITECTURE AND FUNCTIONAL MODEL OF THE COMPLETE JRNL TITL 2 YEAST ESCRT-I HETEROTETRAMER. JRNL REF CELL(CAMBRIDGE,MASS.) V. 129 485 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17442384 JRNL DOI 10.1016/J.CELL.2007.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2769929.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 19504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 988 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2109 REMARK 3 BIN R VALUE (WORKING SET) : 0.4000 REMARK 3 BIN FREE R VALUE : 0.4780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 104 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.047 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 43.12000 REMARK 3 B22 (A**2) : -12.13000 REMARK 3 B33 (A**2) : -30.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.56 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.770 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 8.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.490 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.510; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 47.92 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-06; 28-JUL-06; 22-AUG-06; REMARK 200 22-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : APS; APS; APS; APS REMARK 200 BEAMLINE : 22-ID; 22-ID; 22-BM; 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795; 0.9795; 1.0332; 1.0688 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD; MARMOSAIC 225 MM CCD; REMARK 200 MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38500 REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD; SINGLE WAVELENGTH; REMARK 200 SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD+MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY MIXING 2 MICROL REMARK 280 OF 4 MG/ML PROTEIN IN 50 MM TRIS (PH 7.4), 150 MM NACL, 5 MM DTT REMARK 280 WITH AN EQUAL VOLUME OF 100 MM CITRIC ACID (PH 4.0), 800 MM REMARK 280 AMMONIUM SULFATE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.02700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.88300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 134.57300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.02700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.88300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.57300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.02700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.88300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 134.57300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.02700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.88300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 134.57300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 97340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 103560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1011.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -83.76600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -269.14600 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -83.76600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -269.14600 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -254.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -269.14600 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -83.76600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -269.14600 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -83.76600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -469.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -83.76600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 39580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -422.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -83.76600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -269.14600 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -447.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -269.14600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 212 REMARK 465 ALA A 213 REMARK 465 MET A 214 REMARK 465 ASP A 215 REMARK 465 ILE A 216 REMARK 465 SER A 217 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ILE B 90 REMARK 465 ASN B 91 REMARK 465 LYS B 92 REMARK 465 HIS B 93 REMARK 465 PHE B 94 REMARK 465 GLN B 95 REMARK 465 SER B 96 REMARK 465 ILE B 97 REMARK 465 GLU B 98 REMARK 465 ALA B 99 REMARK 465 PHE B 100 REMARK 465 ALA B 101 REMARK 465 ASP B 102 REMARK 465 THR B 103 REMARK 465 TYR B 104 REMARK 465 ASN B 105 REMARK 465 ILE B 106 REMARK 465 THR B 107 REMARK 465 ALA B 108 REMARK 465 GLY B 118 REMARK 465 GLU C 41 REMARK 465 LYS C 42 REMARK 465 VAL C 43 REMARK 465 ASN C 44 REMARK 465 GLU C 45 REMARK 465 LYS C 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 51 OD1 ASP B 51 2545 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 35 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO C 35 C - N - CD ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 219 -38.77 -38.34 REMARK 500 ASN A 220 -74.13 -63.62 REMARK 500 SER A 305 -75.69 -131.12 REMARK 500 THR A 306 30.27 -75.54 REMARK 500 SER A 307 93.20 -162.35 REMARK 500 HIS A 308 101.79 -44.22 REMARK 500 VAL A 309 32.86 -81.32 REMARK 500 ASP A 310 159.08 51.78 REMARK 500 GLU A 312 -10.84 -42.13 REMARK 500 PRO A 383 79.63 -66.17 REMARK 500 LEU A 384 66.62 -170.58 REMARK 500 GLN B 10 -175.39 -59.11 REMARK 500 ASN B 11 10.97 84.41 REMARK 500 GLN B 12 17.62 48.31 REMARK 500 ASP B 13 33.46 -99.99 REMARK 500 ASP B 26 62.22 -155.84 REMARK 500 ASN B 27 -17.46 53.52 REMARK 500 LEU B 58 7.01 -69.62 REMARK 500 THR B 65 -76.20 -56.96 REMARK 500 SER B 84 13.75 -66.48 REMARK 500 LYS B 87 31.97 -82.44 REMARK 500 GLU B 88 -18.73 -144.70 REMARK 500 MET C 31 -98.26 -80.21 REMARK 500 ASP C 32 -68.60 3.81 REMARK 500 VAL C 33 49.78 -170.41 REMARK 500 VAL C 34 86.88 53.20 REMARK 500 PRO C 35 -117.86 -59.44 REMARK 500 SER C 36 130.20 175.75 REMARK 500 PRO C 53 -88.95 -64.41 REMARK 500 GLU C 54 28.48 -151.18 REMARK 500 LEU C 59 147.54 -33.50 REMARK 500 SER C 60 -24.42 -30.76 REMARK 500 SER C 61 -35.23 170.83 REMARK 500 ASN C 83 55.22 -141.37 REMARK 500 SER C 142 -23.55 -168.75 REMARK 500 LYS C 144 -76.21 -148.81 REMARK 500 THR C 171 42.72 -72.76 REMARK 500 THR C 172 74.91 -161.89 REMARK 500 ASP C 206 15.95 -61.07 REMARK 500 LYS C 207 43.00 -140.37 REMARK 500 GLN C 208 -172.82 175.12 REMARK 500 ASN C 210 102.00 141.56 REMARK 500 LYS D 17 -57.15 -25.88 REMARK 500 LYS D 76 -70.24 -70.39 REMARK 500 LEU D 80 -166.83 -169.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F66 RELATED DB: PDB REMARK 900 RELATED ID: 2F6M RELATED DB: PDB REMARK 900 RELATED ID: 2CAZ RELATED DB: PDB REMARK 900 RELATED ID: 1UZX RELATED DB: PDB REMARK 900 RELATED ID: 2J9V RELATED DB: PDB REMARK 900 RELATED ID: 2J9U RELATED DB: PDB DBREF 2P22 A 215 385 UNP P25604 STP22_YEAST 215 385 DBREF 2P22 B 1 118 UNP Q02767 VPS28_YEAST 1 118 DBREF 2P22 C 22 213 UNP Q99176 SRN2_YEAST 22 213 DBREF 2P22 D 4 81 UNP P42939 YG4G_YEAST 4 81 SEQADV 2P22 GLY A 212 UNP P25604 CLONING ARTIFACT SEQADV 2P22 ALA A 213 UNP P25604 CLONING ARTIFACT SEQADV 2P22 MET A 214 UNP P25604 CLONING ARTIFACT SEQADV 2P22 ALA B 101 UNP Q02767 CYS 101 ENGINEERED MUTATION SEQADV 2P22 ALA C 123 UNP Q99176 CYS 123 ENGINEERED MUTATION SEQADV 2P22 MET D 3 UNP P42939 CLONING ARTIFACT SEQRES 1 A 174 GLY ALA MET ASP ILE SER PRO THR ASN HIS HIS GLU MET SEQRES 2 A 174 LEU GLN ASN LEU GLN THR VAL VAL ASN GLU LEU TYR ARG SEQRES 3 A 174 GLU ASP VAL ASP TYR VAL ALA ASP LYS ILE LEU THR ARG SEQRES 4 A 174 GLN THR VAL MET GLN GLU SER ILE ALA ARG PHE HIS GLU SEQRES 5 A 174 ILE ILE ALA ILE ASP LYS ASN HIS LEU ARG ALA VAL GLU SEQRES 6 A 174 GLN ALA ILE GLU GLN THR MET HIS SER LEU ASN ALA GLN SEQRES 7 A 174 ILE ASP VAL LEU THR ALA ASN ARG ALA LYS VAL GLN GLN SEQRES 8 A 174 PHE SER SER THR SER HIS VAL ASP ASP GLU ASP VAL ASN SEQRES 9 A 174 SER ILE ALA VAL ALA LYS THR ASP GLY LEU ASN GLN LEU SEQRES 10 A 174 TYR ASN LEU VAL ALA GLN ASP TYR ALA LEU THR ASP THR SEQRES 11 A 174 ILE GLU CYS LEU SER ARG MET LEU HIS ARG GLY THR ILE SEQRES 12 A 174 PRO LEU ASP THR PHE VAL LYS GLN GLY ARG GLU LEU ALA SEQRES 13 A 174 ARG GLN GLN PHE LEU VAL ARG TRP HIS ILE GLN ARG ILE SEQRES 14 A 174 THR SER PRO LEU SER SEQRES 1 B 118 MET GLN LYS HIS ASN ILE LYS LEU ASN GLN ASN GLN ASP SEQRES 2 B 118 ILE SER GLN LEU PHE HIS ASP GLU VAL PRO LEU PHE ASP SEQRES 3 B 118 ASN SER ILE THR SER LYS ASP LYS GLU VAL ILE GLU THR SEQRES 4 B 118 LEU SER GLU ILE TYR SER ILE VAL ILE THR LEU ASP HIS SEQRES 5 B 118 VAL GLU LYS ALA TYR LEU LYS ASP SER ILE ASP ASP THR SEQRES 6 B 118 GLN TYR THR ASN THR VAL ASP LYS LEU LEU LYS GLN PHE SEQRES 7 B 118 LYS VAL TYR LEU ASN SER GLN ASN LYS GLU GLU ILE ASN SEQRES 8 B 118 LYS HIS PHE GLN SER ILE GLU ALA PHE ALA ASP THR TYR SEQRES 9 B 118 ASN ILE THR ALA SER ASN ALA ILE THR ARG LEU GLU ARG SEQRES 10 B 118 GLY SEQRES 1 C 192 SER ARG LEU ASP ILE ILE ARG ALA GLU MET ASP VAL VAL SEQRES 2 C 192 PRO SER PRO GLY LEU PRO GLU LYS VAL ASN GLU LYS SER SEQRES 3 C 192 LYS ASN ILE PRO LEU PRO GLU GLY ILE ASN LEU LEU SER SEQRES 4 C 192 SER LYS GLU ILE ILE ASP LEU ILE GLN THR HIS ARG HIS SEQRES 5 C 192 GLN LEU GLU LEU TYR VAL THR LYS PHE ASN PRO LEU THR SEQRES 6 C 192 ASP PHE ALA GLY LYS ILE HIS ALA PHE ARG ASP GLN PHE SEQRES 7 C 192 LYS GLN LEU GLU GLU ASN PHE GLU ASP LEU HIS GLU GLN SEQRES 8 C 192 LYS ASP LYS VAL GLN ALA LEU LEU GLU ASN ALA ARG ILE SEQRES 9 C 192 LEU GLU SER LYS TYR VAL ALA SER TRP GLN ASP TYR HIS SEQRES 10 C 192 SER GLU PHE SER LYS LYS TYR GLY ASP ILE ALA LEU LYS SEQRES 11 C 192 LYS LYS LEU GLU GLN ASN THR LYS LYS LEU ASP GLU GLU SEQRES 12 C 192 SER SER GLN LEU GLU THR THR THR ARG SER ILE ASP SER SEQRES 13 C 192 ALA ASP ASP LEU ASP GLN PHE ILE LYS ASN TYR LEU ASP SEQRES 14 C 192 ILE ARG THR GLN TYR HIS LEU ARG ARG GLU LYS LEU ALA SEQRES 15 C 192 THR TRP ASP LYS GLN GLY ASN LEU LYS TYR SEQRES 1 D 79 MET ASN VAL GLU GLU LEU LEU ARG ARG ILE PRO LEU TYR SEQRES 2 D 79 ASN LYS TYR GLY LYS ASP PHE PRO GLN GLU THR VAL THR SEQRES 3 D 79 ARG PHE GLN MET PRO GLU PHE LYS LEU PRO ALA LEU GLN SEQRES 4 D 79 PRO THR ARG ASP LEU LEU CYS PRO TRP TYR GLU GLU CYS SEQRES 5 D 79 ASP ASN ILE THR LYS VAL CYS GLN LEU HIS ASP SER SER SEQRES 6 D 79 ASN LYS LYS PHE ASP GLN TRP TYR LYS GLU GLN TYR LEU SEQRES 7 D 79 SER HET SO4 C 214 5 HET SO4 C 215 5 HET SO4 C 216 5 HET SO4 D 103 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *22(H2 O) HELIX 1 1 PRO A 218 ILE A 247 1 30 HELIX 2 2 LEU A 248 THR A 252 5 5 HELIX 3 3 VAL A 253 ILE A 290 1 38 HELIX 4 4 ILE A 290 SER A 304 1 15 HELIX 5 5 ASP A 313 SER A 316 5 4 HELIX 6 6 THR A 322 ARG A 351 1 30 HELIX 7 7 PRO A 355 SER A 382 1 28 HELIX 8 8 ASP B 13 HIS B 19 5 7 HELIX 9 9 THR B 30 LEU B 58 1 29 HELIX 10 10 ASP B 63 SER B 84 1 22 HELIX 11 11 ASN B 110 GLU B 116 1 7 HELIX 12 12 SER C 22 VAL C 34 1 13 HELIX 13 13 GLU C 54 LEU C 58 5 5 HELIX 14 14 SER C 61 HIS C 71 1 11 HELIX 15 15 HIS C 71 VAL C 79 1 9 HELIX 16 16 THR C 80 ASN C 83 5 4 HELIX 17 17 LEU C 85 LYS C 144 1 60 HELIX 18 18 GLY C 146 THR C 171 1 26 HELIX 19 19 SER C 177 ASP C 206 1 30 HELIX 20 20 MET D 3 ILE D 12 1 10 HELIX 21 21 LEU D 40 SER D 66 1 27 HELIX 22 22 SER D 66 TYR D 79 1 14 SHEET 1 A 2 ALA A 318 VAL A 319 0 SHEET 2 A 2 TYR D 15 ASN D 16 -1 O TYR D 15 N VAL A 319 SITE 1 AC1 3 HIS C 71 HIS C 73 GLN C 74 SITE 1 AC2 5 TYR A 336 HOH C 21 HIS C 196 ARG C 199 SITE 2 AC2 5 GLU D 6 SITE 1 AC3 6 LYS C 113 PRO D 38 ALA D 39 LEU D 40 SITE 2 AC3 6 GLN D 41 HOH D 104 SITE 1 AC4 4 SER C 22 ARG C 23 HIS C 73 ALA D 39 CRYST1 68.054 83.766 269.146 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003715 0.00000