data_2P3I # _entry.id 2P3I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2P3I pdb_00002p3i 10.2210/pdb2p3i/pdb RCSB RCSB041919 ? ? WWPDB D_1000041919 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2P3J . unspecified PDB 2P3K . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2P3I _pdbx_database_status.recvd_initial_deposition_date 2007-03-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Blanchard, H.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein' _citation.journal_abbrev Glycobiology _citation.journal_volume 19 _citation.page_first 194 _citation.page_last 200 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0959-6658 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18974199 _citation.pdbx_database_id_DOI 10.1093/glycob/cwn119 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kraschnefski, M.J.' 1 ? primary 'Bugarcic, A.' 2 ? primary 'Fleming, F.E.' 3 ? primary 'Yu, X.' 4 ? primary 'von Itzstein, M.' 5 ? primary 'Coulson, B.S.' 6 ? primary 'Blanchard, H.' 7 ? # _cell.entry_id 2P3I _cell.length_a 48.549 _cell.length_b 48.549 _cell.length_c 131.639 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P3I _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man VP4 18156.062 1 ? ? 'VP8* domain (fragment 64-224)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn '2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid' 323.296 1 ? ? ? ? 4 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'rotavirus spike protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L ; _entity_poly.pdbx_seq_one_letter_code_can ;VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 LEU n 1 3 ASP n 1 4 GLY n 1 5 PRO n 1 6 TYR n 1 7 GLN n 1 8 PRO n 1 9 THR n 1 10 THR n 1 11 PHE n 1 12 ASN n 1 13 PRO n 1 14 PRO n 1 15 VAL n 1 16 ASP n 1 17 TYR n 1 18 TRP n 1 19 MET n 1 20 LEU n 1 21 LEU n 1 22 ALA n 1 23 PRO n 1 24 THR n 1 25 ALA n 1 26 ALA n 1 27 GLY n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 GLU n 1 32 GLY n 1 33 THR n 1 34 ASN n 1 35 ASN n 1 36 THR n 1 37 ASP n 1 38 ARG n 1 39 TRP n 1 40 LEU n 1 41 ALA n 1 42 THR n 1 43 ILE n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 PRO n 1 48 ASN n 1 49 VAL n 1 50 THR n 1 51 SER n 1 52 GLU n 1 53 THR n 1 54 ARG n 1 55 SER n 1 56 TYR n 1 57 THR n 1 58 LEU n 1 59 PHE n 1 60 GLY n 1 61 THR n 1 62 GLN n 1 63 GLU n 1 64 GLN n 1 65 ILE n 1 66 THR n 1 67 ILE n 1 68 ALA n 1 69 ASN n 1 70 ALA n 1 71 SER n 1 72 GLN n 1 73 THR n 1 74 GLN n 1 75 TRP n 1 76 LYS n 1 77 PHE n 1 78 ILE n 1 79 ASP n 1 80 VAL n 1 81 VAL n 1 82 LYS n 1 83 THR n 1 84 THR n 1 85 GLN n 1 86 ASN n 1 87 GLY n 1 88 SER n 1 89 TYR n 1 90 SER n 1 91 GLN n 1 92 TYR n 1 93 GLY n 1 94 PRO n 1 95 LEU n 1 96 GLN n 1 97 SER n 1 98 THR n 1 99 PRO n 1 100 LYS n 1 101 LEU n 1 102 TYR n 1 103 ALA n 1 104 VAL n 1 105 MET n 1 106 LYS n 1 107 HIS n 1 108 ASN n 1 109 GLY n 1 110 LYS n 1 111 ILE n 1 112 TYR n 1 113 THR n 1 114 TYR n 1 115 ASN n 1 116 GLY n 1 117 GLU n 1 118 THR n 1 119 PRO n 1 120 ASN n 1 121 VAL n 1 122 THR n 1 123 THR n 1 124 LYS n 1 125 TYR n 1 126 TYR n 1 127 SER n 1 128 THR n 1 129 THR n 1 130 ASN n 1 131 TYR n 1 132 ASP n 1 133 SER n 1 134 VAL n 1 135 ASN n 1 136 MET n 1 137 THR n 1 138 ALA n 1 139 PHE n 1 140 CYS n 1 141 ASP n 1 142 PHE n 1 143 TYR n 1 144 ILE n 1 145 ILE n 1 146 PRO n 1 147 ARG n 1 148 GLU n 1 149 GLU n 1 150 GLU n 1 151 SER n 1 152 THR n 1 153 CYS n 1 154 THR n 1 155 GLU n 1 156 TYR n 1 157 ILE n 1 158 ASN n 1 159 ASN n 1 160 GLY n 1 161 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Rotavirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Rotavirus A' _entity_src_gen.gene_src_strain Rhesus _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhesus rotavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10969 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PGEX-VP8 (64-224)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q91HI9_ROTRH _struct_ref.pdbx_db_accession Q91HI9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L ; _struct_ref.pdbx_align_begin 64 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2P3I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q91HI9 _struct_ref_seq.db_align_beg 64 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 224 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 64 _struct_ref_seq.pdbx_auth_seq_align_end 224 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MNA D-saccharide n '2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid' '2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID' 'C12 H21 N O9' 323.296 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2P3I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '1.7M (NH4)2SO4, 2.4% v/v PEG 400, 0.1M PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2004-07-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type MACSCIENCE _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2P3I _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 48.54 _reflns.number_all 16731 _reflns.number_obs 16731 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 19.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2100 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2P3I _refine.ls_number_reflns_obs 15805 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 99.98 _refine.ls_R_factor_obs 0.16388 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16262 _refine.ls_R_factor_R_free 0.18773 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 842 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 14.988 _refine.aniso_B[1][1] 0.06 _refine.aniso_B[2][2] 0.06 _refine.aniso_B[3][3] -0.12 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'RRV VP8* structure PDB code 1KQR' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.111 _refine.pdbx_overall_ESU_R_Free 0.102 _refine.overall_SU_ML 0.061 _refine.overall_SU_B 1.872 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1280 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 1440 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1365 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.304 1.958 ? 1880 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.145 5.000 ? 160 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.201 25.625 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.296 15.000 ? 207 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8.704 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 221 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1038 'X-RAY DIFFRACTION' ? r_nbd_refined 0.202 0.200 ? 554 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 967 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.132 0.200 ? 94 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.147 0.200 ? 30 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.111 0.200 ? 20 'X-RAY DIFFRACTION' ? r_mcbond_it 0.788 1.500 ? 829 'X-RAY DIFFRACTION' ? r_mcangle_it 1.253 2.000 ? 1351 'X-RAY DIFFRACTION' ? r_scbond_it 2.071 3.000 ? 618 'X-RAY DIFFRACTION' ? r_scangle_it 3.056 4.500 ? 529 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.750 _refine_ls_shell.d_res_low 1.795 _refine_ls_shell.number_reflns_R_work 1135 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 99.67 _refine_ls_shell.R_factor_R_free 0.256 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2P3I _struct.title 'Crystal structure of Rhesus Rotavirus VP8* at 295K' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P3I _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'beta-sandwich, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 130 ? VAL A 134 ? ASN A 193 VAL A 197 5 ? 5 HELX_P HELX_P2 2 GLU A 149 ? GLY A 160 ? GLU A 212 GLY A 223 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 4 A . ? GLY 67 A PRO 5 A ? PRO 68 A 1 3.70 2 THR 118 A . ? THR 181 A PRO 119 A ? PRO 182 A 1 4.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 11 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 3 ? TYR A 6 ? ASP A 66 TYR A 69 A 2 PHE A 142 ? PRO A 146 ? PHE A 205 PRO A 209 A 3 TYR A 17 ? LEU A 21 ? TYR A 80 LEU A 84 A 4 TYR A 102 ? HIS A 107 ? TYR A 165 HIS A 170 A 5 LYS A 110 ? GLU A 117 ? LYS A 173 GLU A 180 A 6 SER A 90 ? SER A 97 ? SER A 153 SER A 160 A 7 TRP A 75 ? LYS A 82 ? TRP A 138 LYS A 145 A 8 TRP A 39 ? VAL A 45 ? TRP A 102 VAL A 108 A 9 GLY A 27 ? THR A 33 ? GLY A 90 THR A 96 A 10 ASN A 135 ? ALA A 138 ? ASN A 198 ALA A 201 A 11 THR A 10 ? PHE A 11 ? THR A 73 PHE A 74 B 1 ASP A 3 ? TYR A 6 ? ASP A 66 TYR A 69 B 2 PHE A 142 ? PRO A 146 ? PHE A 205 PRO A 209 B 3 TYR A 17 ? LEU A 21 ? TYR A 80 LEU A 84 B 4 TYR A 102 ? HIS A 107 ? TYR A 165 HIS A 170 B 5 LYS A 110 ? GLU A 117 ? LYS A 173 GLU A 180 B 6 THR A 122 ? SER A 127 ? THR A 185 SER A 190 C 1 VAL A 49 ? LEU A 58 ? VAL A 112 LEU A 121 C 2 THR A 61 ? ASN A 69 ? THR A 124 ASN A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 6 ? N TYR A 69 O PHE A 142 ? O PHE A 205 A 2 3 O ILE A 145 ? O ILE A 208 N TRP A 18 ? N TRP A 81 A 3 4 N LEU A 21 ? N LEU A 84 O TYR A 102 ? O TYR A 165 A 4 5 N MET A 105 ? N MET A 168 O TYR A 112 ? O TYR A 175 A 5 6 O GLY A 116 ? O GLY A 179 N GLN A 96 ? N GLN A 159 A 6 7 O LEU A 95 ? O LEU A 158 N PHE A 77 ? N PHE A 140 A 7 8 O VAL A 80 ? O VAL A 143 N ALA A 41 ? N ALA A 104 A 8 9 O THR A 42 ? O THR A 105 N VAL A 29 ? N VAL A 92 A 9 10 N GLU A 31 ? N GLU A 94 O THR A 137 ? O THR A 200 A 10 11 O MET A 136 ? O MET A 199 N PHE A 11 ? N PHE A 74 B 1 2 N TYR A 6 ? N TYR A 69 O PHE A 142 ? O PHE A 205 B 2 3 O ILE A 145 ? O ILE A 208 N TRP A 18 ? N TRP A 81 B 3 4 N LEU A 21 ? N LEU A 84 O TYR A 102 ? O TYR A 165 B 4 5 N MET A 105 ? N MET A 168 O TYR A 112 ? O TYR A 175 B 5 6 N ASN A 115 ? N ASN A 178 O THR A 122 ? O THR A 185 C 1 2 N TYR A 56 ? N TYR A 119 O GLU A 63 ? O GLU A 126 # _database_PDB_matrix.entry_id 2P3I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2P3I _atom_sites.fract_transf_matrix[1][1] 0.020598 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020598 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007597 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 64 64 VAL VAL A . n A 1 2 LEU 2 65 65 LEU LEU A . n A 1 3 ASP 3 66 66 ASP ASP A . n A 1 4 GLY 4 67 67 GLY GLY A . n A 1 5 PRO 5 68 68 PRO PRO A . n A 1 6 TYR 6 69 69 TYR TYR A . n A 1 7 GLN 7 70 70 GLN GLN A . n A 1 8 PRO 8 71 71 PRO PRO A . n A 1 9 THR 9 72 72 THR THR A . n A 1 10 THR 10 73 73 THR THR A . n A 1 11 PHE 11 74 74 PHE PHE A . n A 1 12 ASN 12 75 75 ASN ASN A . n A 1 13 PRO 13 76 76 PRO PRO A . n A 1 14 PRO 14 77 77 PRO PRO A . n A 1 15 VAL 15 78 78 VAL VAL A . n A 1 16 ASP 16 79 79 ASP ASP A . n A 1 17 TYR 17 80 80 TYR TYR A . n A 1 18 TRP 18 81 81 TRP TRP A . n A 1 19 MET 19 82 82 MET MET A . n A 1 20 LEU 20 83 83 LEU LEU A . n A 1 21 LEU 21 84 84 LEU LEU A . n A 1 22 ALA 22 85 85 ALA ALA A . n A 1 23 PRO 23 86 86 PRO PRO A . n A 1 24 THR 24 87 87 THR THR A . n A 1 25 ALA 25 88 88 ALA ALA A . n A 1 26 ALA 26 89 89 ALA ALA A . n A 1 27 GLY 27 90 90 GLY GLY A . n A 1 28 VAL 28 91 91 VAL VAL A . n A 1 29 VAL 29 92 92 VAL VAL A . n A 1 30 VAL 30 93 93 VAL VAL A . n A 1 31 GLU 31 94 94 GLU GLU A . n A 1 32 GLY 32 95 95 GLY GLY A . n A 1 33 THR 33 96 96 THR THR A . n A 1 34 ASN 34 97 97 ASN ASN A . n A 1 35 ASN 35 98 98 ASN ASN A . n A 1 36 THR 36 99 99 THR THR A . n A 1 37 ASP 37 100 100 ASP ASP A . n A 1 38 ARG 38 101 101 ARG ARG A . n A 1 39 TRP 39 102 102 TRP TRP A . n A 1 40 LEU 40 103 103 LEU LEU A . n A 1 41 ALA 41 104 104 ALA ALA A . n A 1 42 THR 42 105 105 THR THR A . n A 1 43 ILE 43 106 106 ILE ILE A . n A 1 44 LEU 44 107 107 LEU LEU A . n A 1 45 VAL 45 108 108 VAL VAL A . n A 1 46 GLU 46 109 109 GLU GLU A . n A 1 47 PRO 47 110 110 PRO PRO A . n A 1 48 ASN 48 111 111 ASN ASN A . n A 1 49 VAL 49 112 112 VAL VAL A . n A 1 50 THR 50 113 113 THR THR A . n A 1 51 SER 51 114 114 SER SER A . n A 1 52 GLU 52 115 115 GLU GLU A . n A 1 53 THR 53 116 116 THR THR A . n A 1 54 ARG 54 117 117 ARG ARG A . n A 1 55 SER 55 118 118 SER SER A . n A 1 56 TYR 56 119 119 TYR TYR A . n A 1 57 THR 57 120 120 THR THR A . n A 1 58 LEU 58 121 121 LEU LEU A . n A 1 59 PHE 59 122 122 PHE PHE A . n A 1 60 GLY 60 123 123 GLY GLY A . n A 1 61 THR 61 124 124 THR THR A . n A 1 62 GLN 62 125 125 GLN GLN A . n A 1 63 GLU 63 126 126 GLU GLU A . n A 1 64 GLN 64 127 127 GLN GLN A . n A 1 65 ILE 65 128 128 ILE ILE A . n A 1 66 THR 66 129 129 THR THR A . n A 1 67 ILE 67 130 130 ILE ILE A . n A 1 68 ALA 68 131 131 ALA ALA A . n A 1 69 ASN 69 132 132 ASN ASN A . n A 1 70 ALA 70 133 133 ALA ALA A . n A 1 71 SER 71 134 134 SER SER A . n A 1 72 GLN 72 135 135 GLN GLN A . n A 1 73 THR 73 136 136 THR THR A . n A 1 74 GLN 74 137 137 GLN GLN A . n A 1 75 TRP 75 138 138 TRP TRP A . n A 1 76 LYS 76 139 139 LYS LYS A . n A 1 77 PHE 77 140 140 PHE PHE A . n A 1 78 ILE 78 141 141 ILE ILE A . n A 1 79 ASP 79 142 142 ASP ASP A . n A 1 80 VAL 80 143 143 VAL VAL A . n A 1 81 VAL 81 144 144 VAL VAL A . n A 1 82 LYS 82 145 145 LYS LYS A . n A 1 83 THR 83 146 146 THR THR A . n A 1 84 THR 84 147 147 THR THR A . n A 1 85 GLN 85 148 148 GLN GLN A . n A 1 86 ASN 86 149 149 ASN ASN A . n A 1 87 GLY 87 150 150 GLY GLY A . n A 1 88 SER 88 151 151 SER SER A . n A 1 89 TYR 89 152 152 TYR TYR A . n A 1 90 SER 90 153 153 SER SER A . n A 1 91 GLN 91 154 154 GLN GLN A . n A 1 92 TYR 92 155 155 TYR TYR A . n A 1 93 GLY 93 156 156 GLY GLY A . n A 1 94 PRO 94 157 157 PRO PRO A . n A 1 95 LEU 95 158 158 LEU LEU A . n A 1 96 GLN 96 159 159 GLN GLN A . n A 1 97 SER 97 160 160 SER SER A . n A 1 98 THR 98 161 161 THR THR A . n A 1 99 PRO 99 162 162 PRO PRO A . n A 1 100 LYS 100 163 163 LYS LYS A . n A 1 101 LEU 101 164 164 LEU LEU A . n A 1 102 TYR 102 165 165 TYR TYR A . n A 1 103 ALA 103 166 166 ALA ALA A . n A 1 104 VAL 104 167 167 VAL VAL A . n A 1 105 MET 105 168 168 MET MET A . n A 1 106 LYS 106 169 169 LYS LYS A . n A 1 107 HIS 107 170 170 HIS HIS A . n A 1 108 ASN 108 171 171 ASN ASN A . n A 1 109 GLY 109 172 172 GLY GLY A . n A 1 110 LYS 110 173 173 LYS LYS A . n A 1 111 ILE 111 174 174 ILE ILE A . n A 1 112 TYR 112 175 175 TYR TYR A . n A 1 113 THR 113 176 176 THR THR A . n A 1 114 TYR 114 177 177 TYR TYR A . n A 1 115 ASN 115 178 178 ASN ASN A . n A 1 116 GLY 116 179 179 GLY GLY A . n A 1 117 GLU 117 180 180 GLU GLU A . n A 1 118 THR 118 181 181 THR THR A . n A 1 119 PRO 119 182 182 PRO PRO A . n A 1 120 ASN 120 183 183 ASN ASN A . n A 1 121 VAL 121 184 184 VAL VAL A . n A 1 122 THR 122 185 185 THR THR A . n A 1 123 THR 123 186 186 THR THR A . n A 1 124 LYS 124 187 187 LYS LYS A . n A 1 125 TYR 125 188 188 TYR TYR A . n A 1 126 TYR 126 189 189 TYR TYR A . n A 1 127 SER 127 190 190 SER SER A . n A 1 128 THR 128 191 191 THR THR A . n A 1 129 THR 129 192 192 THR THR A . n A 1 130 ASN 130 193 193 ASN ASN A . n A 1 131 TYR 131 194 194 TYR TYR A . n A 1 132 ASP 132 195 195 ASP ASP A . n A 1 133 SER 133 196 196 SER SER A . n A 1 134 VAL 134 197 197 VAL VAL A . n A 1 135 ASN 135 198 198 ASN ASN A . n A 1 136 MET 136 199 199 MET MET A . n A 1 137 THR 137 200 200 THR THR A . n A 1 138 ALA 138 201 201 ALA ALA A . n A 1 139 PHE 139 202 202 PHE PHE A . n A 1 140 CYS 140 203 203 CYS CYS A . n A 1 141 ASP 141 204 204 ASP ASP A . n A 1 142 PHE 142 205 205 PHE PHE A . n A 1 143 TYR 143 206 206 TYR TYR A . n A 1 144 ILE 144 207 207 ILE ILE A . n A 1 145 ILE 145 208 208 ILE ILE A . n A 1 146 PRO 146 209 209 PRO PRO A . n A 1 147 ARG 147 210 210 ARG ARG A . n A 1 148 GLU 148 211 211 GLU GLU A . n A 1 149 GLU 149 212 212 GLU GLU A . n A 1 150 GLU 150 213 213 GLU GLU A . n A 1 151 SER 151 214 214 SER SER A . n A 1 152 THR 152 215 215 THR THR A . n A 1 153 CYS 153 216 216 CYS CYS A . n A 1 154 THR 154 217 217 THR THR A . n A 1 155 GLU 155 218 218 GLU GLU A . n A 1 156 TYR 156 219 219 TYR TYR A . n A 1 157 ILE 157 220 220 ILE ILE A . n A 1 158 ASN 158 221 221 ASN ASN A . n A 1 159 ASN 159 222 222 ASN ASN A . n A 1 160 GLY 160 223 223 GLY GLY A . n A 1 161 LEU 161 224 224 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 3000 3000 SO4 SO4 A . C 3 MNA 1 1000 1000 MNA MNA A . D 4 HOH 1 3001 1 HOH HOH A . D 4 HOH 2 3002 2 HOH HOH A . D 4 HOH 3 3003 3 HOH HOH A . D 4 HOH 4 3004 4 HOH HOH A . D 4 HOH 5 3005 5 HOH HOH A . D 4 HOH 6 3006 6 HOH HOH A . D 4 HOH 7 3007 7 HOH HOH A . D 4 HOH 8 3008 8 HOH HOH A . D 4 HOH 9 3009 9 HOH HOH A . D 4 HOH 10 3010 10 HOH HOH A . D 4 HOH 11 3011 11 HOH HOH A . D 4 HOH 12 3012 12 HOH HOH A . D 4 HOH 13 3013 13 HOH HOH A . D 4 HOH 14 3014 14 HOH HOH A . D 4 HOH 15 3015 15 HOH HOH A . D 4 HOH 16 3016 16 HOH HOH A . D 4 HOH 17 3017 17 HOH HOH A . D 4 HOH 18 3018 18 HOH HOH A . D 4 HOH 19 3019 19 HOH HOH A . D 4 HOH 20 3020 20 HOH HOH A . D 4 HOH 21 3021 21 HOH HOH A . D 4 HOH 22 3022 22 HOH HOH A . D 4 HOH 23 3023 23 HOH HOH A . D 4 HOH 24 3024 24 HOH HOH A . D 4 HOH 25 3025 25 HOH HOH A . D 4 HOH 26 3026 26 HOH HOH A . D 4 HOH 27 3027 27 HOH HOH A . D 4 HOH 28 3028 28 HOH HOH A . D 4 HOH 29 3029 29 HOH HOH A . D 4 HOH 30 3030 30 HOH HOH A . D 4 HOH 31 3031 31 HOH HOH A . D 4 HOH 32 3032 32 HOH HOH A . D 4 HOH 33 3033 33 HOH HOH A . D 4 HOH 34 3034 34 HOH HOH A . D 4 HOH 35 3035 35 HOH HOH A . D 4 HOH 36 3036 36 HOH HOH A . D 4 HOH 37 3037 37 HOH HOH A . D 4 HOH 38 3038 38 HOH HOH A . D 4 HOH 39 3039 39 HOH HOH A . D 4 HOH 40 3040 40 HOH HOH A . D 4 HOH 41 3041 41 HOH HOH A . D 4 HOH 42 3042 42 HOH HOH A . D 4 HOH 43 3043 43 HOH HOH A . D 4 HOH 44 3044 44 HOH HOH A . D 4 HOH 45 3045 45 HOH HOH A . D 4 HOH 46 3046 46 HOH HOH A . D 4 HOH 47 3047 47 HOH HOH A . D 4 HOH 48 3048 48 HOH HOH A . D 4 HOH 49 3049 49 HOH HOH A . D 4 HOH 50 3050 50 HOH HOH A . D 4 HOH 51 3051 51 HOH HOH A . D 4 HOH 52 3052 52 HOH HOH A . D 4 HOH 53 3053 53 HOH HOH A . D 4 HOH 54 3054 54 HOH HOH A . D 4 HOH 55 3055 55 HOH HOH A . D 4 HOH 56 3056 56 HOH HOH A . D 4 HOH 57 3057 57 HOH HOH A . D 4 HOH 58 3058 58 HOH HOH A . D 4 HOH 59 3059 59 HOH HOH A . D 4 HOH 60 3060 60 HOH HOH A . D 4 HOH 61 3061 61 HOH HOH A . D 4 HOH 62 3062 62 HOH HOH A . D 4 HOH 63 3063 63 HOH HOH A . D 4 HOH 64 3064 64 HOH HOH A . D 4 HOH 65 3065 65 HOH HOH A . D 4 HOH 66 3066 66 HOH HOH A . D 4 HOH 67 3067 67 HOH HOH A . D 4 HOH 68 3068 68 HOH HOH A . D 4 HOH 69 3069 69 HOH HOH A . D 4 HOH 70 3070 70 HOH HOH A . D 4 HOH 71 3071 71 HOH HOH A . D 4 HOH 72 3072 72 HOH HOH A . D 4 HOH 73 3073 73 HOH HOH A . D 4 HOH 74 3074 74 HOH HOH A . D 4 HOH 75 3075 75 HOH HOH A . D 4 HOH 76 3076 76 HOH HOH A . D 4 HOH 77 3077 77 HOH HOH A . D 4 HOH 78 3078 78 HOH HOH A . D 4 HOH 79 3079 79 HOH HOH A . D 4 HOH 80 3080 80 HOH HOH A . D 4 HOH 81 3081 81 HOH HOH A . D 4 HOH 82 3082 82 HOH HOH A . D 4 HOH 83 3083 83 HOH HOH A . D 4 HOH 84 3084 84 HOH HOH A . D 4 HOH 85 3085 85 HOH HOH A . D 4 HOH 86 3086 86 HOH HOH A . D 4 HOH 87 3087 87 HOH HOH A . D 4 HOH 88 3088 88 HOH HOH A . D 4 HOH 89 3089 89 HOH HOH A . D 4 HOH 90 3090 90 HOH HOH A . D 4 HOH 91 3091 91 HOH HOH A . D 4 HOH 92 3092 92 HOH HOH A . D 4 HOH 93 3093 93 HOH HOH A . D 4 HOH 94 3094 94 HOH HOH A . D 4 HOH 95 3095 95 HOH HOH A . D 4 HOH 96 3096 96 HOH HOH A . D 4 HOH 97 3097 97 HOH HOH A . D 4 HOH 98 3098 98 HOH HOH A . D 4 HOH 99 3099 99 HOH HOH A . D 4 HOH 100 3100 100 HOH HOH A . D 4 HOH 101 3101 101 HOH HOH A . D 4 HOH 102 3102 102 HOH HOH A . D 4 HOH 103 3103 103 HOH HOH A . D 4 HOH 104 3104 104 HOH HOH A . D 4 HOH 105 3105 105 HOH HOH A . D 4 HOH 106 3106 106 HOH HOH A . D 4 HOH 107 3107 107 HOH HOH A . D 4 HOH 108 3108 108 HOH HOH A . D 4 HOH 109 3109 109 HOH HOH A . D 4 HOH 110 3110 110 HOH HOH A . D 4 HOH 111 3111 111 HOH HOH A . D 4 HOH 112 3112 112 HOH HOH A . D 4 HOH 113 3113 113 HOH HOH A . D 4 HOH 114 3114 114 HOH HOH A . D 4 HOH 115 3115 115 HOH HOH A . D 4 HOH 116 3116 116 HOH HOH A . D 4 HOH 117 3117 117 HOH HOH A . D 4 HOH 118 3118 118 HOH HOH A . D 4 HOH 119 3119 119 HOH HOH A . D 4 HOH 120 3120 120 HOH HOH A . D 4 HOH 121 3121 121 HOH HOH A . D 4 HOH 122 3122 122 HOH HOH A . D 4 HOH 123 3123 123 HOH HOH A . D 4 HOH 124 3124 124 HOH HOH A . D 4 HOH 125 3125 125 HOH HOH A . D 4 HOH 126 3126 126 HOH HOH A . D 4 HOH 127 3127 127 HOH HOH A . D 4 HOH 128 3128 128 HOH HOH A . D 4 HOH 129 3129 129 HOH HOH A . D 4 HOH 130 3130 130 HOH HOH A . D 4 HOH 131 3131 131 HOH HOH A . D 4 HOH 132 3132 132 HOH HOH A . D 4 HOH 133 3133 133 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 3093 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-10-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen 8 5 'Structure model' chem_comp 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' database_2 12 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_chem_comp.mon_nstd_flag' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 5 'Structure model' '_chem_comp.pdbx_synonyms' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 'PROTEUM PLUS' 'data collection' PLUS ? 2 SAINT 'data reduction' . ? 3 LSCALE 'data scaling' . ? 4 AMoRE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 99 ? ? -129.06 -65.79 2 1 ASN A 111 ? ? 64.26 68.31 3 1 SER A 114 ? ? -34.42 117.65 4 1 PRO A 182 ? ? -97.56 37.62 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MNA C1 C N N 250 MNA C2 C N R 251 MNA C3 C N N 252 MNA C4 C N S 253 MNA C5 C N R 254 MNA C6 C N R 255 MNA C7 C N R 256 MNA C8 C N R 257 MNA C9 C N N 258 MNA C10 C N N 259 MNA C11 C N N 260 MNA C12 C N N 261 MNA N5 N N N 262 MNA O1A O N N 263 MNA O1B O N N 264 MNA O2 O N N 265 MNA O4 O N N 266 MNA O6 O N N 267 MNA O7 O N N 268 MNA O8 O N N 269 MNA O9 O N N 270 MNA O10 O N N 271 MNA H32 H N N 272 MNA H31 H N N 273 MNA H4 H N N 274 MNA H5 H N N 275 MNA H6 H N N 276 MNA H7 H N N 277 MNA H8 H N N 278 MNA H92 H N N 279 MNA H91 H N N 280 MNA H111 H N N 281 MNA H113 H N N 282 MNA H112 H N N 283 MNA H121 H N N 284 MNA H122 H N N 285 MNA H123 H N N 286 MNA HN5 H N N 287 MNA HO1B H N N 288 MNA HO4 H N N 289 MNA HO7 H N N 290 MNA HO8 H N N 291 MNA HO9 H N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PRO N N N N 316 PRO CA C N S 317 PRO C C N N 318 PRO O O N N 319 PRO CB C N N 320 PRO CG C N N 321 PRO CD C N N 322 PRO OXT O N N 323 PRO H H N N 324 PRO HA H N N 325 PRO HB2 H N N 326 PRO HB3 H N N 327 PRO HG2 H N N 328 PRO HG3 H N N 329 PRO HD2 H N N 330 PRO HD3 H N N 331 PRO HXT H N N 332 SER N N N N 333 SER CA C N S 334 SER C C N N 335 SER O O N N 336 SER CB C N N 337 SER OG O N N 338 SER OXT O N N 339 SER H H N N 340 SER H2 H N N 341 SER HA H N N 342 SER HB2 H N N 343 SER HB3 H N N 344 SER HG H N N 345 SER HXT H N N 346 SO4 S S N N 347 SO4 O1 O N N 348 SO4 O2 O N N 349 SO4 O3 O N N 350 SO4 O4 O N N 351 THR N N N N 352 THR CA C N S 353 THR C C N N 354 THR O O N N 355 THR CB C N R 356 THR OG1 O N N 357 THR CG2 C N N 358 THR OXT O N N 359 THR H H N N 360 THR H2 H N N 361 THR HA H N N 362 THR HB H N N 363 THR HG1 H N N 364 THR HG21 H N N 365 THR HG22 H N N 366 THR HG23 H N N 367 THR HXT H N N 368 TRP N N N N 369 TRP CA C N S 370 TRP C C N N 371 TRP O O N N 372 TRP CB C N N 373 TRP CG C Y N 374 TRP CD1 C Y N 375 TRP CD2 C Y N 376 TRP NE1 N Y N 377 TRP CE2 C Y N 378 TRP CE3 C Y N 379 TRP CZ2 C Y N 380 TRP CZ3 C Y N 381 TRP CH2 C Y N 382 TRP OXT O N N 383 TRP H H N N 384 TRP H2 H N N 385 TRP HA H N N 386 TRP HB2 H N N 387 TRP HB3 H N N 388 TRP HD1 H N N 389 TRP HE1 H N N 390 TRP HE3 H N N 391 TRP HZ2 H N N 392 TRP HZ3 H N N 393 TRP HH2 H N N 394 TRP HXT H N N 395 TYR N N N N 396 TYR CA C N S 397 TYR C C N N 398 TYR O O N N 399 TYR CB C N N 400 TYR CG C Y N 401 TYR CD1 C Y N 402 TYR CD2 C Y N 403 TYR CE1 C Y N 404 TYR CE2 C Y N 405 TYR CZ C Y N 406 TYR OH O N N 407 TYR OXT O N N 408 TYR H H N N 409 TYR H2 H N N 410 TYR HA H N N 411 TYR HB2 H N N 412 TYR HB3 H N N 413 TYR HD1 H N N 414 TYR HD2 H N N 415 TYR HE1 H N N 416 TYR HE2 H N N 417 TYR HH H N N 418 TYR HXT H N N 419 VAL N N N N 420 VAL CA C N S 421 VAL C C N N 422 VAL O O N N 423 VAL CB C N N 424 VAL CG1 C N N 425 VAL CG2 C N N 426 VAL OXT O N N 427 VAL H H N N 428 VAL H2 H N N 429 VAL HA H N N 430 VAL HB H N N 431 VAL HG11 H N N 432 VAL HG12 H N N 433 VAL HG13 H N N 434 VAL HG21 H N N 435 VAL HG22 H N N 436 VAL HG23 H N N 437 VAL HXT H N N 438 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MNA C1 C2 sing N N 237 MNA C1 O1A doub N N 238 MNA C1 O1B sing N N 239 MNA C2 C3 sing N N 240 MNA C2 O2 sing N N 241 MNA C2 O6 sing N N 242 MNA C3 C4 sing N N 243 MNA C3 H32 sing N N 244 MNA C3 H31 sing N N 245 MNA C4 C5 sing N N 246 MNA C4 O4 sing N N 247 MNA C4 H4 sing N N 248 MNA C5 C6 sing N N 249 MNA C5 N5 sing N N 250 MNA C5 H5 sing N N 251 MNA C6 C7 sing N N 252 MNA C6 O6 sing N N 253 MNA C6 H6 sing N N 254 MNA C7 C8 sing N N 255 MNA C7 O7 sing N N 256 MNA C7 H7 sing N N 257 MNA C8 C9 sing N N 258 MNA C8 O8 sing N N 259 MNA C8 H8 sing N N 260 MNA C9 O9 sing N N 261 MNA C9 H92 sing N N 262 MNA C9 H91 sing N N 263 MNA C10 C11 sing N N 264 MNA C10 N5 sing N N 265 MNA C10 O10 doub N N 266 MNA C11 H111 sing N N 267 MNA C11 H113 sing N N 268 MNA C11 H112 sing N N 269 MNA C12 O2 sing N N 270 MNA C12 H121 sing N N 271 MNA C12 H122 sing N N 272 MNA C12 H123 sing N N 273 MNA N5 HN5 sing N N 274 MNA O1B HO1B sing N N 275 MNA O4 HO4 sing N N 276 MNA O7 HO7 sing N N 277 MNA O8 HO8 sing N N 278 MNA O9 HO9 sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 PRO N CA sing N N 303 PRO N CD sing N N 304 PRO N H sing N N 305 PRO CA C sing N N 306 PRO CA CB sing N N 307 PRO CA HA sing N N 308 PRO C O doub N N 309 PRO C OXT sing N N 310 PRO CB CG sing N N 311 PRO CB HB2 sing N N 312 PRO CB HB3 sing N N 313 PRO CG CD sing N N 314 PRO CG HG2 sing N N 315 PRO CG HG3 sing N N 316 PRO CD HD2 sing N N 317 PRO CD HD3 sing N N 318 PRO OXT HXT sing N N 319 SER N CA sing N N 320 SER N H sing N N 321 SER N H2 sing N N 322 SER CA C sing N N 323 SER CA CB sing N N 324 SER CA HA sing N N 325 SER C O doub N N 326 SER C OXT sing N N 327 SER CB OG sing N N 328 SER CB HB2 sing N N 329 SER CB HB3 sing N N 330 SER OG HG sing N N 331 SER OXT HXT sing N N 332 SO4 S O1 doub N N 333 SO4 S O2 doub N N 334 SO4 S O3 sing N N 335 SO4 S O4 sing N N 336 THR N CA sing N N 337 THR N H sing N N 338 THR N H2 sing N N 339 THR CA C sing N N 340 THR CA CB sing N N 341 THR CA HA sing N N 342 THR C O doub N N 343 THR C OXT sing N N 344 THR CB OG1 sing N N 345 THR CB CG2 sing N N 346 THR CB HB sing N N 347 THR OG1 HG1 sing N N 348 THR CG2 HG21 sing N N 349 THR CG2 HG22 sing N N 350 THR CG2 HG23 sing N N 351 THR OXT HXT sing N N 352 TRP N CA sing N N 353 TRP N H sing N N 354 TRP N H2 sing N N 355 TRP CA C sing N N 356 TRP CA CB sing N N 357 TRP CA HA sing N N 358 TRP C O doub N N 359 TRP C OXT sing N N 360 TRP CB CG sing N N 361 TRP CB HB2 sing N N 362 TRP CB HB3 sing N N 363 TRP CG CD1 doub Y N 364 TRP CG CD2 sing Y N 365 TRP CD1 NE1 sing Y N 366 TRP CD1 HD1 sing N N 367 TRP CD2 CE2 doub Y N 368 TRP CD2 CE3 sing Y N 369 TRP NE1 CE2 sing Y N 370 TRP NE1 HE1 sing N N 371 TRP CE2 CZ2 sing Y N 372 TRP CE3 CZ3 doub Y N 373 TRP CE3 HE3 sing N N 374 TRP CZ2 CH2 doub Y N 375 TRP CZ2 HZ2 sing N N 376 TRP CZ3 CH2 sing Y N 377 TRP CZ3 HZ3 sing N N 378 TRP CH2 HH2 sing N N 379 TRP OXT HXT sing N N 380 TYR N CA sing N N 381 TYR N H sing N N 382 TYR N H2 sing N N 383 TYR CA C sing N N 384 TYR CA CB sing N N 385 TYR CA HA sing N N 386 TYR C O doub N N 387 TYR C OXT sing N N 388 TYR CB CG sing N N 389 TYR CB HB2 sing N N 390 TYR CB HB3 sing N N 391 TYR CG CD1 doub Y N 392 TYR CG CD2 sing Y N 393 TYR CD1 CE1 sing Y N 394 TYR CD1 HD1 sing N N 395 TYR CD2 CE2 doub Y N 396 TYR CD2 HD2 sing N N 397 TYR CE1 CZ doub Y N 398 TYR CE1 HE1 sing N N 399 TYR CE2 CZ sing Y N 400 TYR CE2 HE2 sing N N 401 TYR CZ OH sing N N 402 TYR OH HH sing N N 403 TYR OXT HXT sing N N 404 VAL N CA sing N N 405 VAL N H sing N N 406 VAL N H2 sing N N 407 VAL CA C sing N N 408 VAL CA CB sing N N 409 VAL CA HA sing N N 410 VAL C O doub N N 411 VAL C OXT sing N N 412 VAL CB CG1 sing N N 413 VAL CB CG2 sing N N 414 VAL CB HB sing N N 415 VAL CG1 HG11 sing N N 416 VAL CG1 HG12 sing N N 417 VAL CG1 HG13 sing N N 418 VAL CG2 HG21 sing N N 419 VAL CG2 HG22 sing N N 420 VAL CG2 HG23 sing N N 421 VAL OXT HXT sing N N 422 # _pdbx_chem_comp_identifier.comp_id MNA _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier '2-O-methyl-5-N-acetyl-a-D-neuraminic acid' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid' MNA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KQR _pdbx_initial_refinement_model.details 'RRV VP8* structure PDB code 1KQR' #