HEADER VIRAL PROTEIN,TRANSFERASE 11-MAR-07 2P41 TITLE CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH TITLE 2 7MEGPPPG2'OME AND S-ADENOSYL-L-HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-296; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 STRAIN: TYPE 2 NEW GUINEA; SOURCE 5 GENE: NSP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS VIZIER; VIRAL ENZYMES INVOLVED IN REPLICATION; DENGUE VIRUS KEYWDS 2 METHYLTRANSFERASE; STRUCTURAL GENOMICS; MARSEILLES STRUCTURAL KEYWDS 3 GENOMICS PROGRAM @ AFMB; MSGP, VIRAL PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.EGLOFF,MARSEILLES STRUCTURAL GENOMICS PROGRAM @ AFMB (MSGP) REVDAT 5 30-AUG-23 2P41 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2P41 1 VERSN REVDAT 3 24-FEB-09 2P41 1 VERSN REVDAT 2 20-NOV-07 2P41 1 JRNL REVDAT 1 28-AUG-07 2P41 0 JRNL AUTH M.P.EGLOFF,E.DECROLY,H.MALET,B.SELISKO,D.BENARROCH,F.FERRON, JRNL AUTH 2 B.CANARD JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF METHYLATION AND 5'-RNA JRNL TITL 2 SEQUENCE REQUIREMENTS OF SHORT CAPPED RNAS BY THE JRNL TITL 3 METHYLTRANSFERASE DOMAIN OF DENGUE VIRUS NS5 JRNL REF J.MOL.BIOL. V. 372 723 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17686489 JRNL DOI 10.1016/J.JMB.2007.07.005 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2070 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2332 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2314 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3164 ; 1.542 ; 2.031 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 5.260 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;32.063 ;23.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;13.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.366 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1696 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1129 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1538 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.385 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 1.150 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 1.918 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1002 ; 2.922 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2981 76.2036 28.3873 REMARK 3 T TENSOR REMARK 3 T11: -.0813 T22: -.1454 REMARK 3 T33: -.1584 T12: -.0053 REMARK 3 T13: -.0383 T23: .0391 REMARK 3 L TENSOR REMARK 3 L11: 3.6520 L22: 6.5399 REMARK 3 L33: 3.1704 L12: -.5539 REMARK 3 L13: .2098 L23: 1.9147 REMARK 3 S TENSOR REMARK 3 S11: -.0952 S12: -.3314 S13: .0475 REMARK 3 S21: .3249 S22: .1630 S23: -.3349 REMARK 3 S31: -.0150 S32: .0864 S33: -.0678 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1504 76.1590 1.0167 REMARK 3 T TENSOR REMARK 3 T11: -.0820 T22: -.1377 REMARK 3 T33: -.1111 T12: .0408 REMARK 3 T13: .0196 T23: -.0261 REMARK 3 L TENSOR REMARK 3 L11: 5.6691 L22: 4.0096 REMARK 3 L33: 1.9323 L12: -.4135 REMARK 3 L13: -1.8542 L23: -1.8577 REMARK 3 S TENSOR REMARK 3 S11: .0629 S12: -.0788 S13: .1592 REMARK 3 S21: -.0544 S22: -.0835 S23: -.3047 REMARK 3 S31: -.0852 S32: .1378 S33: .0206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2636 81.6462 4.6980 REMARK 3 T TENSOR REMARK 3 T11: -.1026 T22: -.1308 REMARK 3 T33: -.1184 T12: -.0009 REMARK 3 T13: -.0395 T23: -.0065 REMARK 3 L TENSOR REMARK 3 L11: .5826 L22: 1.6330 REMARK 3 L33: 2.8842 L12: -.2217 REMARK 3 L13: -.6440 L23: .6656 REMARK 3 S TENSOR REMARK 3 S11: .0445 S12: .1162 S13: -.0002 REMARK 3 S21: -.2719 S22: -.0317 S23: .1518 REMARK 3 S31: .0480 S32: -.1976 S33: -.0127 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8279 72.8230 16.6906 REMARK 3 T TENSOR REMARK 3 T11: -.1378 T22: -.1550 REMARK 3 T33: -.1142 T12: -.0334 REMARK 3 T13: .0008 T23: .0030 REMARK 3 L TENSOR REMARK 3 L11: .8120 L22: 1.4375 REMARK 3 L33: 2.4314 L12: -.1473 REMARK 3 L13: -.0633 L23: -.0314 REMARK 3 S TENSOR REMARK 3 S11: .0424 S12: -.0031 S13: -.1245 REMARK 3 S21: -.0195 S22: -.0182 S23: .1319 REMARK 3 S31: .1588 S32: -.1106 S33: -.0242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000041938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03400 REMARK 200 FOR THE DATA SET : 37.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21500 REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1L9K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, 1.2 M LITHIUM SULFATE, PH 5.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.63000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.26000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.26000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -262.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 187.74392 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.26000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ARG A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 ILE A 265 REMARK 465 GLY A 266 REMARK 465 ILE A 267 REMARK 465 GLU A 268 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 THR A 271 REMARK 465 PRO A 272 REMARK 465 ASN A 273 REMARK 465 LEU A 274 REMARK 465 ASP A 275 REMARK 465 ILE A 276 REMARK 465 ILE A 277 REMARK 465 GLY A 278 REMARK 465 LYS A 279 REMARK 465 ARG A 280 REMARK 465 ILE A 281 REMARK 465 GLU A 282 REMARK 465 LYS A 283 REMARK 465 ILE A 284 REMARK 465 LYS A 285 REMARK 465 GLN A 286 REMARK 465 GLU A 287 REMARK 465 HIS A 288 REMARK 465 GLU A 289 REMARK 465 THR A 290 REMARK 465 SER A 291 REMARK 465 TRP A 292 REMARK 465 HIS A 293 REMARK 465 TYR A 294 REMARK 465 ASP A 295 REMARK 465 GLN A 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 249 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 101 CA CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -48.46 70.33 REMARK 500 ASN A 223 51.61 -103.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G1G A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L9K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH S- REMARK 900 ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH GTP REMARK 900 AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH GPPPA REMARK 900 AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH REMARK 900 7MEGPPPA AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P3Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH GPPPG REMARK 900 AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P40 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH REMARK 900 7MEGPPPG AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: NS5 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REMARK 999 REMARK 999 DIFFERENCES BETWEEN THIS STRUCTURE AND UNP ENTRY REMARK 999 Q9WLZ8_9FLAV REFLECT ACTUAL DIFFERENCES IN THE CDNA REMARK 999 USED FOR EXPRESSION OF THE VIRAL GENE IN E.COLI. DBREF 2P41 A 4 296 UNP Q9WLZ8 Q9WLZ8_9FLAV 2495 2787 SEQADV 2P41 MET A -8 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 ARG A -7 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 GLY A -6 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 SER A -5 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 HIS A -4 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 HIS A -3 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 HIS A -2 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 HIS A -1 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 HIS A 0 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 HIS A 1 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 GLY A 2 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 SER A 3 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P41 LEU A 70 UNP Q9WLZ8 MET 2561 SEE REMARK 999 SEQADV 2P41 ARG A 139 UNP Q9WLZ8 LYS 2630 SEE REMARK 999 SEQADV 2P41 SER A 173 UNP Q9WLZ8 ASN 2664 SEE REMARK 999 SEQADV 2P41 VAL A 180 UNP Q9WLZ8 ILE 2671 SEE REMARK 999 SEQADV 2P41 SER A 188 UNP Q9WLZ8 PRO 2679 SEE REMARK 999 SEQADV 2P41 HIS A 201 UNP Q9WLZ8 TYR 2692 SEE REMARK 999 SEQADV 2P41 THR A 271 UNP Q9WLZ8 ILE 2762 SEE REMARK 999 SEQRES 1 A 305 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASN SEQRES 2 A 305 ILE GLY GLU THR LEU GLY GLU LYS TRP LYS SER ARG LEU SEQRES 3 A 305 ASN ALA LEU GLY LYS SER GLU PHE GLN ILE TYR LYS LYS SEQRES 4 A 305 SER GLY ILE GLN GLU VAL ASP ARG THR LEU ALA LYS GLU SEQRES 5 A 305 GLY ILE LYS ARG GLY GLU THR ASP HIS HIS ALA VAL SER SEQRES 6 A 305 ARG GLY SER ALA LYS LEU ARG TRP PHE VAL GLU ARG ASN SEQRES 7 A 305 LEU VAL THR PRO GLU GLY LYS VAL VAL ASP LEU GLY CYS SEQRES 8 A 305 GLY ARG GLY GLY TRP SER TYR TYR CYS GLY GLY LEU LYS SEQRES 9 A 305 ASN VAL ARG GLU VAL LYS GLY LEU THR LYS GLY GLY PRO SEQRES 10 A 305 GLY HIS GLU GLU PRO ILE PRO MET SER THR TYR GLY TRP SEQRES 11 A 305 ASN LEU VAL ARG LEU GLN SER GLY VAL ASP VAL PHE PHE SEQRES 12 A 305 ILE PRO PRO GLU ARG CYS ASP THR LEU LEU CYS ASP ILE SEQRES 13 A 305 GLY GLU SER SER PRO ASN PRO THR VAL GLU ALA GLY ARG SEQRES 14 A 305 THR LEU ARG VAL LEU ASN LEU VAL GLU ASN TRP LEU SER SEQRES 15 A 305 ASN ASN THR GLN PHE CYS VAL LYS VAL LEU ASN PRO TYR SEQRES 16 A 305 MET SER SER VAL ILE GLU LYS MET GLU ALA LEU GLN ARG SEQRES 17 A 305 LYS HIS GLY GLY ALA LEU VAL ARG ASN PRO LEU SER ARG SEQRES 18 A 305 ASN SER THR HIS GLU MET TYR TRP VAL SER ASN ALA SER SEQRES 19 A 305 GLY ASN ILE VAL SER SER VAL ASN MET ILE SER ARG MET SEQRES 20 A 305 LEU ILE ASN ARG PHE THR MET ARG HIS LYS LYS ALA THR SEQRES 21 A 305 TYR GLU PRO ASP VAL ASP LEU GLY SER GLY THR ARG ASN SEQRES 22 A 305 ILE GLY ILE GLU SER GLU THR PRO ASN LEU ASP ILE ILE SEQRES 23 A 305 GLY LYS ARG ILE GLU LYS ILE LYS GLN GLU HIS GLU THR SEQRES 24 A 305 SER TRP HIS TYR ASP GLN HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET G1G A1001 64 HET SAH A1012 30 HET CIT A1013 13 HET GOL A1009 6 HET GOL A1010 6 HET GOL A1011 6 HETNAM SO4 SULFATE ION HETNAM G1G 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)- HETNAM 2 G1G GUANOSINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 G1G C22 H32 N10 O18 P3 1+ FORMUL 10 SAH C14 H20 N6 O5 S FORMUL 11 CIT C6 H8 O7 FORMUL 12 GOL 3(C3 H8 O3) FORMUL 15 HOH *302(H2 O) HELIX 1 1 THR A 8 LEU A 20 1 13 HELIX 2 2 GLY A 21 SER A 31 1 11 HELIX 3 3 ARG A 38 ARG A 47 1 10 HELIX 4 4 ARG A 57 ARG A 68 1 12 HELIX 5 5 GLY A 85 GLY A 93 1 9 HELIX 6 6 GLY A 120 ASN A 122 5 3 HELIX 7 7 ASN A 153 LEU A 172 1 20 HELIX 8 8 MET A 187 GLY A 202 1 16 HELIX 9 9 ASN A 227 THR A 244 1 18 SHEET 1 A 2 GLN A 34 ASP A 37 0 SHEET 2 A 2 THR A 251 PRO A 254 1 O GLU A 253 N ASP A 37 SHEET 1 B 7 VAL A 124 GLN A 127 0 SHEET 2 B 7 VAL A 97 LEU A 103 1 N GLY A 102 O GLN A 127 SHEET 3 B 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 B 7 THR A 142 CYS A 145 1 O LEU A 144 N VAL A 78 SHEET 5 B 7 GLN A 177 VAL A 182 1 O GLN A 177 N LEU A 143 SHEET 6 B 7 MET A 218 VAL A 221 -1 O TRP A 220 N VAL A 180 SHEET 7 B 7 ALA A 204 VAL A 206 -1 N VAL A 206 O TYR A 219 LINK O1 SO4 A1006 O4 SO4 A1008 1555 1555 1.72 CISPEP 1 GLY A 6 GLU A 7 0 -7.33 SITE 1 AC1 6 HIS A 110 GLU A 111 SAH A1012 HOH A1202 SITE 2 AC1 6 HOH A1220 HOH A1229 SITE 1 AC2 6 LYS A 105 HIS A 110 SAH A1012 HOH A1039 SITE 2 AC2 6 HOH A1082 HOH A1251 SITE 1 AC3 9 GLN A 34 GLU A 49 HIS A 52 HIS A 53 SITE 2 AC3 9 TRP A 64 ARG A 68 HOH A1254 HOH A1282 SITE 3 AC3 9 HOH A1283 SITE 1 AC4 9 LYS A 105 HIS A 110 SER A 150 SER A 151 SITE 2 AC4 9 ARG A 160 HOH A1073 HOH A1228 HOH A1233 SITE 3 AC4 9 HOH A1251 SITE 1 AC5 7 LYS A 29 ARG A 57 ARG A 212 SO4 A1008 SITE 2 AC5 7 HOH A1144 HOH A1145 HOH A1246 SITE 1 AC6 8 ARG A 38 LYS A 42 SER A 56 ARG A 57 SITE 2 AC6 8 ARG A 84 HOH A1153 HOH A1247 HOH A1284 SITE 1 AC7 7 ARG A 57 LYS A 61 SO4 A1006 HOH A1118 SITE 2 AC7 7 HOH A1142 HOH A1246 HOH A1306 SITE 1 AC8 20 LYS A 14 LEU A 17 ASN A 18 LEU A 20 SITE 2 AC8 20 LYS A 22 PHE A 25 LYS A 29 PRO A 108 SITE 3 AC8 20 GLY A 109 SER A 150 SER A 151 PRO A 152 SITE 4 AC8 20 SER A 214 HOH A1018 HOH A1035 HOH A1073 SITE 5 AC8 20 HOH A1107 HOH A1138 HOH A1144 HOH A1200 SITE 1 AC9 21 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC9 21 GLY A 86 TRP A 87 THR A 104 LYS A 105 SITE 3 AC9 21 HIS A 110 VAL A 130 ASP A 131 VAL A 132 SITE 4 AC9 21 PHE A 133 ASP A 146 SO4 A1002 SO4 A1003 SITE 5 AC9 21 CIT A1013 HOH A1028 HOH A1031 HOH A1038 SITE 6 AC9 21 HOH A1082 SITE 1 BC1 12 LYS A 105 ASP A 131 PHE A 134 VAL A 156 SITE 2 BC1 12 GLY A 159 ARG A 160 ARG A 163 SAH A1012 SITE 3 BC1 12 HOH A1065 HOH A1082 HOH A1089 HOH A1163 SITE 1 BC2 3 LYS A 30 ARG A 57 ARG A 212 SITE 1 BC3 6 GLU A 49 THR A 50 ASP A 51 GLU A 67 SITE 2 BC3 6 ARG A 68 HOH A1282 SITE 1 BC4 9 GLU A 11 LYS A 14 SER A 15 ASN A 18 SITE 2 BC4 9 PRO A 152 PRO A 154 HOH A1111 HOH A1218 SITE 3 BC4 9 HOH A1294 CRYST1 108.394 108.394 55.890 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009226 0.005326 0.000000 0.00000 SCALE2 0.000000 0.010653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017892 0.00000