HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-MAR-07 2P5Z TITLE THE E. COLI C3393 PROTEIN IS A COMPONENT OF THE TYPE VI SECRETION TITLE 2 SYSTEM AND EXHIBITS STRUCTURAL SIMILARITY TO T4 BACTERIOPHAGE TAIL TITLE 3 PROTEINS GP27 AND GP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE VI SECRETION SYSTEM COMPONENT; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O6; SOURCE 3 ORGANISM_TAXID: 217992; SOURCE 4 STRAIN: O6:H1, CFT073, UPEC; SOURCE 5 ATCC: 700928; SOURCE 6 GENE: C3393; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,J.B.BONANNO,V.SRIDHAR,C.LAU,R.TORO,T.GHEYI,M.MALETIC, AUTHOR 2 J.C.FREEMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 21-FEB-24 2P5Z 1 REMARK REVDAT 8 03-FEB-21 2P5Z 1 AUTHOR JRNL SEQADV REVDAT 7 14-NOV-18 2P5Z 1 AUTHOR REVDAT 6 18-OCT-17 2P5Z 1 REMARK REVDAT 5 13-JUL-11 2P5Z 1 VERSN REVDAT 4 31-MAR-09 2P5Z 1 JRNL REVDAT 3 24-MAR-09 2P5Z 1 COMPND JRNL TITLE REVDAT 2 24-FEB-09 2P5Z 1 VERSN REVDAT 1 03-APR-07 2P5Z 0 JRNL AUTH P.G.LEIMAN,M.BASLER,U.A.RAMAGOPAL,J.B.BONANNO,J.M.SAUDER, JRNL AUTH 2 S.PUKATZKI,S.K.BURLEY,S.C.ALMO,J.J.MEKALANOS JRNL TITL TYPE VI SECRETION APPARATUS AND PHAGE TAIL-ASSOCIATED JRNL TITL 2 PROTEIN COMPLEXES SHARE A COMMON EVOLUTIONARY ORIGIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 4154 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19251641 JRNL DOI 10.1073/PNAS.0813360106 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -2.35000 REMARK 3 B12 (A**2) : 0.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.395 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.283 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2959 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4001 ; 1.874 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 8.515 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;34.553 ;22.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;20.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2259 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1203 ; 0.160 ; 0.100 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1957 ; 0.322 ; 0.300 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 203 ; 0.211 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.111 ; 0.100 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.182 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1832 ; 2.896 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2894 ; 4.634 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1263 ; 3.105 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1107 ; 4.658 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : 0.55800 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 21% PEG 3350, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.29200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.29200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.29200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT APPEARS TO BE TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 116.35100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 58.17550 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 100.76292 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X -1 REMARK 465 SER X 0 REMARK 465 LEU X 1 REMARK 465 GLU X 2 REMARK 465 ALA X 3 REMARK 465 LEU X 4 REMARK 465 MET X 5 REMARK 465 ASN X 6 REMARK 465 VAL X 7 REMARK 465 GLN X 8 REMARK 465 PHE X 9 REMARK 465 PHE X 10 REMARK 465 ASP X 11 REMARK 465 HIS X 12 REMARK 465 ALA X 13 REMARK 465 HIS X 14 REMARK 465 PRO X 71 REMARK 465 PRO X 72 REMARK 465 VAL X 73 REMARK 465 GLN X 74 REMARK 465 GLY X 75 REMARK 465 MET X 76 REMARK 465 PRO X 77 REMARK 465 VAL X 78 REMARK 465 GLN X 79 REMARK 465 THR X 80 REMARK 465 HIS X 216 REMARK 465 PRO X 217 REMARK 465 SER X 218 REMARK 465 GLY X 219 REMARK 465 LEU X 220 REMARK 465 PHE X 221 REMARK 465 ASP X 222 REMARK 465 GLY X 223 REMARK 465 GLU X 224 REMARK 465 VAL X 238 REMARK 465 GLU X 239 REMARK 465 LYS X 240 REMARK 465 SER X 241 REMARK 465 VAL X 242 REMARK 465 SER X 243 REMARK 465 THR X 244 REMARK 465 ARG X 245 REMARK 465 ASP X 246 REMARK 465 TYR X 247 REMARK 465 ASN X 248 REMARK 465 TYR X 249 REMARK 465 ARG X 250 REMARK 465 GLU X 251 REMARK 465 ALA X 252 REMARK 465 THR X 253 REMARK 465 ALA X 254 REMARK 465 GLU X 255 REMARK 465 MET X 256 REMARK 465 THR X 257 REMARK 465 THR X 258 REMARK 465 GLY X 259 REMARK 465 GLN X 260 REMARK 465 HIS X 261 REMARK 465 ASP X 262 REMARK 465 ALA X 263 REMARK 465 THR X 264 REMARK 465 GLY X 265 REMARK 465 GLY X 266 REMARK 465 ASP X 267 REMARK 465 ASN X 268 REMARK 465 THR X 269 REMARK 465 THR X 270 REMARK 465 TYR X 271 REMARK 465 GLY X 272 REMARK 465 GLU X 273 REMARK 465 ALA X 274 REMARK 465 TYR X 275 REMARK 465 HIS X 276 REMARK 465 TYR X 277 REMARK 465 ALA X 278 REMARK 465 ASP X 279 REMARK 465 ASN X 280 REMARK 465 PHE X 281 REMARK 465 LEU X 282 REMARK 465 GLN X 283 REMARK 465 GLN X 284 REMARK 465 GLY X 285 REMARK 465 ASP X 286 REMARK 465 LYS X 287 REMARK 465 GLU X 288 REMARK 465 ALA X 289 REMARK 465 ALA X 290 REMARK 465 GLU X 291 REMARK 465 THR X 392 REMARK 465 VAL X 393 REMARK 465 LYS X 394 REMARK 465 ASN X 395 REMARK 465 ASP X 414 REMARK 465 GLN X 429 REMARK 465 SER X 430 REMARK 465 ARG X 431 REMARK 465 PRO X 432 REMARK 465 TYR X 433 REMARK 465 ALA X 434 REMARK 465 GLY X 435 REMARK 465 ASP X 436 REMARK 465 THR X 437 REMARK 465 TYR X 438 REMARK 465 GLY X 439 REMARK 465 LEU X 440 REMARK 465 HIS X 441 REMARK 465 LEU X 442 REMARK 465 PRO X 443 REMARK 465 HIS X 469 REMARK 465 ASP X 470 REMARK 465 SER X 471 REMARK 465 ALA X 472 REMARK 465 HIS X 473 REMARK 465 THR X 474 REMARK 465 ASP X 475 REMARK 465 HIS X 476 REMARK 465 VAL X 477 REMARK 465 THR X 478 REMARK 465 ILE X 479 REMARK 465 GLN X 480 REMARK 465 ASN X 481 REMARK 465 GLU X 482 REMARK 465 GLY X 483 REMARK 465 HIS X 484 REMARK 465 HIS X 485 REMARK 465 HIS X 486 REMARK 465 HIS X 487 REMARK 465 HIS X 488 REMARK 465 HIS X 489 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU X 212 CD1 REMARK 470 ARG X 215 CG CD NE CZ NH1 NH2 REMARK 470 ARG X 415 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO X 213 C - N - CA ANGL. DEV. = 29.6 DEGREES REMARK 500 PRO X 213 C - N - CD ANGL. DEV. = -28.0 DEGREES REMARK 500 LEU X 358 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 LEU X 411 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 29 -73.42 -83.67 REMARK 500 ALA X 53 46.60 -152.80 REMARK 500 MET X 61 -6.06 70.72 REMARK 500 SER X 98 -165.25 -100.67 REMARK 500 PRO X 213 -161.68 53.48 REMARK 500 LEU X 214 119.43 114.29 REMARK 500 ALA X 294 -87.54 128.66 REMARK 500 PHE X 295 -90.03 49.90 REMARK 500 ARG X 354 -49.20 -147.22 REMARK 500 SER X 355 -175.78 59.55 REMARK 500 ALA X 399 131.92 157.05 REMARK 500 LYS X 403 44.73 -70.93 REMARK 500 ASP X 404 -21.19 -154.71 REMARK 500 ARG X 406 59.63 74.11 REMARK 500 LEU X 445 -27.38 -145.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU X 212 PRO X 213 62.54 REMARK 500 PRO X 213 LEU X 214 -145.21 REMARK 500 ALA X 294 PHE X 295 56.64 REMARK 500 SER X 355 TYR X 356 -146.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10105B RELATED DB: TARGETDB DBREF 2P5Z X 2 481 UNP Q8FED2 Q8FED2_ECOL6 2 481 SEQADV 2P5Z MET X -1 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z SER X 0 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z LEU X 1 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z GLU X 482 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z GLY X 483 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z HIS X 484 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z HIS X 485 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z HIS X 486 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z HIS X 487 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z HIS X 488 UNP Q8FED2 CLONING ARTIFACT SEQADV 2P5Z HIS X 489 UNP Q8FED2 CLONING ARTIFACT SEQRES 1 X 491 MET SER LEU GLU ALA LEU MET ASN VAL GLN PHE PHE ASP SEQRES 2 X 491 HIS ALA HIS HIS LYS LEU LYS ILE ARG GLY LEU GLN SER SEQRES 3 X 491 PRO VAL ASP VAL LEU THR PHE GLU GLY ARG GLU GLN LEU SEQRES 4 X 491 SER THR PRO PHE ARG TYR ASP ILE GLN PHE THR SER SER SEQRES 5 X 491 ASP LYS ALA ILE ALA PRO GLU SER VAL LEU MET GLN ASP SEQRES 6 X 491 GLY ALA PHE SER LEU THR ALA PRO PRO VAL GLN GLY MET SEQRES 7 X 491 PRO VAL GLN THR ALA LEU ARG THR LEU HIS GLY VAL ILE SEQRES 8 X 491 THR GLY PHE LYS HIS LEU SER SER SER GLN ASP GLU ALA SEQRES 9 X 491 ARG TYR GLU VAL ARG LEU GLU PRO ARG MET ALA LEU LEU SEQRES 10 X 491 THR ARG SER ARG GLN ASN ALA ILE TYR GLN ASN GLN THR SEQRES 11 X 491 VAL PRO GLN ILE VAL GLU LYS ILE LEU ARG GLU ARG HIS SEQRES 12 X 491 GLN MET ARG GLY GLN ASP PHE VAL PHE ASN LEU LYS SER SEQRES 13 X 491 GLU TYR PRO ALA ARG GLU GLN VAL MET GLN TYR GLY GLU SEQRES 14 X 491 ASP ASP LEU THR PHE VAL SER ARG LEU LEU SER GLU VAL SEQRES 15 X 491 GLY ILE TRP PHE ARG PHE ALA THR ASP ALA ARG LEU LYS SEQRES 16 X 491 ILE GLU VAL ILE GLU PHE TYR ASP ASP GLN SER GLY TYR SEQRES 17 X 491 GLU ARG GLY LEU THR LEU PRO LEU ARG HIS PRO SER GLY SEQRES 18 X 491 LEU PHE ASP GLY GLU THR GLU ALA VAL TRP GLY LEU ASN SEQRES 19 X 491 THR ALA TYR SER VAL VAL GLU LYS SER VAL SER THR ARG SEQRES 20 X 491 ASP TYR ASN TYR ARG GLU ALA THR ALA GLU MET THR THR SEQRES 21 X 491 GLY GLN HIS ASP ALA THR GLY GLY ASP ASN THR THR TYR SEQRES 22 X 491 GLY GLU ALA TYR HIS TYR ALA ASP ASN PHE LEU GLN GLN SEQRES 23 X 491 GLY ASP LYS GLU ALA ALA GLU SER GLY ALA PHE TYR ALA SEQRES 24 X 491 ARG ILE ARG HIS GLU ARG TYR LEU ASN GLU GLN ALA ILE SEQRES 25 X 491 LEU LYS GLY GLN SER THR SER SER LEU LEU MET PRO GLY SEQRES 26 X 491 LEU GLU ILE LYS VAL GLN GLY ASP ASP ALA PRO ALA VAL SEQRES 27 X 491 PHE ARG LYS GLY VAL LEU ILE THR GLY VAL THR THR SER SEQRES 28 X 491 ALA ALA ARG ASP ARG SER TYR GLU LEU THR PHE THR ALA SEQRES 29 X 491 ILE PRO TYR SER GLU ARG TYR GLY TYR ARG PRO ALA LEU SEQRES 30 X 491 ILE PRO ARG PRO VAL MET ALA GLY THR LEU PRO ALA ARG SEQRES 31 X 491 VAL THR SER THR VAL LYS ASN ASP ILE TYR ALA HIS ILE SEQRES 32 X 491 ASP LYS ASP GLY ARG TYR ARG VAL ASN LEU ASP PHE ASP SEQRES 33 X 491 ARG ASP THR TRP LYS PRO GLY TYR GLU SER LEU TRP VAL SEQRES 34 X 491 ARG GLN SER ARG PRO TYR ALA GLY ASP THR TYR GLY LEU SEQRES 35 X 491 HIS LEU PRO LEU LEU ALA GLY THR GLU VAL SER ILE ALA SEQRES 36 X 491 PHE GLU GLU GLY ASN PRO ASP ARG PRO TYR ILE ALA GLY SEQRES 37 X 491 VAL LYS HIS ASP SER ALA HIS THR ASP HIS VAL THR ILE SEQRES 38 X 491 GLN ASN GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *62(H2 O) HELIX 1 1 ALA X 55 VAL X 59 5 5 HELIX 2 2 PRO X 110 ARG X 117 5 8 HELIX 3 3 THR X 128 GLU X 139 1 12 HELIX 4 4 ASP X 168 GLY X 181 1 14 HELIX 5 5 ASP X 202 TYR X 206 5 5 HELIX 6 6 PHE X 295 GLU X 307 1 13 HELIX 7 7 PRO X 334 GLY X 340 1 7 HELIX 8 8 GLU X 456 ASN X 458 5 3 SHEET 1 A 9 LYS X 16 ILE X 19 0 SHEET 2 A 9 ASP X 63 LEU X 68 -1 O ALA X 65 N LYS X 18 SHEET 3 A 9 ARG X 83 SER X 97 -1 O LEU X 85 N PHE X 66 SHEET 4 A 9 ALA X 102 GLU X 109 -1 O GLU X 109 N VAL X 88 SHEET 5 A 9 ARG X 42 SER X 49 -1 N PHE X 47 O TYR X 104 SHEET 6 A 9 ASP X 27 GLN X 36 -1 N THR X 30 O GLN X 46 SHEET 7 A 9 VAL X 341 ALA X 351 -1 O VAL X 346 N GLU X 35 SHEET 8 A 9 LEU X 324 VAL X 328 -1 N ILE X 326 O VAL X 341 SHEET 9 A 9 GLU X 207 LEU X 212 1 N GLU X 207 O GLU X 325 SHEET 1 B10 LYS X 16 ILE X 19 0 SHEET 2 B10 ASP X 63 LEU X 68 -1 O ALA X 65 N LYS X 18 SHEET 3 B10 ARG X 83 SER X 97 -1 O LEU X 85 N PHE X 66 SHEET 4 B10 ALA X 102 GLU X 109 -1 O GLU X 109 N VAL X 88 SHEET 5 B10 ARG X 42 SER X 49 -1 N PHE X 47 O TYR X 104 SHEET 6 B10 ASP X 27 GLN X 36 -1 N THR X 30 O GLN X 46 SHEET 7 B10 VAL X 341 ALA X 351 -1 O VAL X 346 N GLU X 35 SHEET 8 B10 GLU X 357 PRO X 364 -1 O ILE X 363 N LEU X 342 SHEET 9 B10 ALA X 309 SER X 315 -1 N SER X 315 O LEU X 358 SHEET 10 B10 VAL X 228 TYR X 235 -1 N ASN X 232 O LYS X 312 SHEET 1 C 2 ALA X 122 GLN X 127 0 SHEET 2 C 2 ARG X 159 GLN X 164 -1 O ARG X 159 N GLN X 127 SHEET 1 D 3 PHE X 148 ASN X 151 0 SHEET 2 D 3 ILE X 194 TYR X 200 1 O PHE X 199 N VAL X 149 SHEET 3 D 3 TRP X 183 ASP X 189 -1 N TRP X 183 O TYR X 200 SHEET 1 E 5 SER X 424 VAL X 427 0 SHEET 2 E 5 TYR X 407 ASN X 410 -1 N VAL X 409 O LEU X 425 SHEET 3 E 5 LEU X 385 VAL X 389 -1 N ARG X 388 O ASN X 410 SHEET 4 E 5 GLU X 449 PHE X 454 -1 O ILE X 452 N LEU X 385 SHEET 5 E 5 PRO X 462 VAL X 467 -1 O ALA X 465 N SER X 451 CISPEP 1 ARG X 208 GLY X 209 0 -1.95 CISPEP 2 LEU X 214 ARG X 215 0 -17.64 CISPEP 3 SER X 292 GLY X 293 0 3.37 CISPEP 4 GLY X 293 ALA X 294 0 -16.52 CISPEP 5 GLY X 330 ASP X 331 0 -6.23 CISPEP 6 ASP X 396 ILE X 397 0 9.42 CISPEP 7 GLY X 405 ARG X 406 0 -1.63 CISPEP 8 LEU X 444 LEU X 445 0 15.75 CISPEP 9 LEU X 445 ALA X 446 0 -10.59 CISPEP 10 ALA X 465 GLY X 466 0 -14.84 CRYST1 116.351 116.351 80.584 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008595 0.004962 0.000000 0.00000 SCALE2 0.000000 0.009924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012409 0.00000