HEADER HYDROLASE 19-MAR-07 2P6X TITLE CRYSTAL STRUCTURE OF HUMAN TYROSINE PHOSPHATASE PTPN22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 22; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PTPN22, TYROSINE-PROTEIN PHOSPHATASE CATALYTIC DOMAIN; COMPND 5 SYNONYM: HEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE 70Z-PEP, COMPND 6 LYMPHOID PHOSPHATASE, LYP; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN22, PTPN8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS TYROSINE PHOSPHATASE, LYMPHOID PHOSPHATASE, PEP, LYP, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,E.SALAH,A.BARR,L.SHRESTHA,I.ALFANO,N.BURGESS-BROWN, AUTHOR 2 O.KING,C.UMEANO,E.PAPAGRIGORIOU,A.C.W.PIKE,G.BUNKOCZI,A.TURNBULL, AUTHOR 3 J.UPPENBERG,M.SUNDSTROM,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,F.VON AUTHOR 4 DELFT,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 2P6X 1 REMARK SEQADV REVDAT 6 18-OCT-17 2P6X 1 REMARK REVDAT 5 13-JUL-11 2P6X 1 VERSN REVDAT 4 09-JUN-09 2P6X 1 REVDAT REVDAT 3 24-FEB-09 2P6X 1 VERSN REVDAT 2 03-FEB-09 2P6X 1 JRNL REVDAT 1 03-APR-07 2P6X 0 JRNL AUTH A.J.BARR,E.UGOCHUKWU,W.H.LEE,O.N.KING,P.FILIPPAKOPOULOS, JRNL AUTH 2 I.ALFANO,P.SAVITSKY,N.A.BURGESS-BROWN,S.MULLER,S.KNAPP JRNL TITL LARGE-SCALE STRUCTURAL ANALYSIS OF THE CLASSICAL HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATOME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 352 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19167335 JRNL DOI 10.1016/J.CELL.2008.11.038 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4830 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4983 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3440 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6750 ; 1.518 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8376 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 6.145 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;33.784 ;23.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 883 ;14.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.162 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5465 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1029 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 979 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3458 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2461 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2580 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 303 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.024 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.079 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3160 ; 5.098 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1194 ; 2.414 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4898 ; 5.956 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2210 ; 8.346 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 9.561 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 298 5 REMARK 3 1 B 3 B 298 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1740 ; 0.43 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 2231 ; 0.58 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1740 ; 1.75 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2231 ; 2.97 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5934 20.5471 103.5649 REMARK 3 T TENSOR REMARK 3 T11: -0.1113 T22: -0.1236 REMARK 3 T33: -0.0764 T12: -0.0074 REMARK 3 T13: -0.0198 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.2785 L22: 0.6731 REMARK 3 L33: 1.0419 L12: 0.0675 REMARK 3 L13: -0.0957 L23: -0.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0819 S13: 0.1169 REMARK 3 S21: -0.0579 S22: 0.0457 S23: 0.0904 REMARK 3 S31: 0.0209 S32: -0.0415 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 298 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5338 21.2041 70.5653 REMARK 3 T TENSOR REMARK 3 T11: -0.0657 T22: -0.0873 REMARK 3 T33: -0.1232 T12: 0.0147 REMARK 3 T13: 0.0230 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.2182 L22: 1.3803 REMARK 3 L33: 1.9396 L12: -0.0661 REMARK 3 L13: -0.0763 L23: -0.6317 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.1747 S13: 0.0031 REMARK 3 S21: -0.2246 S22: -0.0545 S23: -0.1570 REMARK 3 S31: 0.1370 S32: 0.1849 S33: 0.1174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54178 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 59.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE PH 7.9, 25% PEG 10000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.22100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 78 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ASP B 299 REMARK 465 LYS B 300 REMARK 465 HIS B 301 REMARK 465 SER B 302 REMARK 465 ALA B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CD CE NZ REMARK 470 GLN A 15 CD OE1 NE2 REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 32 NZ REMARK 470 LYS A 39 CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ILE A 76 CG1 CG2 CD1 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 LYS A 136 CE NZ REMARK 470 GLN A 150 CD OE1 NE2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 LYS A 177 CD CE NZ REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 GLU A 264 CD OE1 OE2 REMARK 470 LYS A 300 CD CE NZ REMARK 470 HIS A 301 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 GLU B 13 OE1 OE2 REMARK 470 GLN B 15 CD OE1 NE2 REMARK 470 LYS B 18 CD CE NZ REMARK 470 LYS B 32 NZ REMARK 470 LYS B 39 CD CE NZ REMARK 470 LYS B 51 NZ REMARK 470 LYS B 56 CE NZ REMARK 470 LYS B 61 CE NZ REMARK 470 LYS B 91 NZ REMARK 470 LYS B 136 CE NZ REMARK 470 LYS B 177 CD CE NZ REMARK 470 SER B 180 OG REMARK 470 LYS B 191 NZ REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 HIS B 196 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 197 CG OD1 OD2 REMARK 470 VAL B 198 CG1 CG2 REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 ARG B 298 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 658 O HOH A 819 1.99 REMARK 500 O HOH A 755 O HOH A 774 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 74 -13.16 -145.33 REMARK 500 ILE A 76 69.69 39.30 REMARK 500 MET A 149 -147.14 63.08 REMARK 500 ASP A 218 -166.56 -120.60 REMARK 500 CYS A 227 -132.30 -128.02 REMARK 500 ALA B 128 47.21 -107.38 REMARK 500 MET B 149 -139.08 56.01 REMARK 500 SER B 167 -71.86 -35.99 REMARK 500 ASN B 179 -112.86 51.69 REMARK 500 ASP B 218 -166.98 -113.97 REMARK 500 CYS B 227 -137.95 -125.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OC3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN PROTEIN TYROSINE REMARK 900 PHOSPHATASE NON-RECEPTOR TYPE 18 DBREF 2P6X A 1 302 UNP Q9Y2R2 PTN22_HUMAN 1 302 DBREF 2P6X B 1 302 UNP Q9Y2R2 PTN22_HUMAN 1 302 SEQADV 2P6X ALA A 303 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS A 304 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS A 305 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS A 306 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS A 307 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS A 308 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS A 309 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X ALA B 303 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS B 304 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS B 305 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS B 306 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS B 307 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS B 308 UNP Q9Y2R2 CLONING ARTIFACT SEQADV 2P6X HIS B 309 UNP Q9Y2R2 CLONING ARTIFACT SEQRES 1 A 309 MET ASP GLN ARG GLU ILE LEU GLN LYS PHE LEU ASP GLU SEQRES 2 A 309 ALA GLN SER LYS LYS ILE THR LYS GLU GLU PHE ALA ASN SEQRES 3 A 309 GLU PHE LEU LYS LEU LYS ARG GLN SER THR LYS TYR LYS SEQRES 4 A 309 ALA ASP LYS THR TYR PRO THR THR VAL ALA GLU LYS PRO SEQRES 5 A 309 LYS ASN ILE LYS LYS ASN ARG TYR LYS ASP ILE LEU PRO SEQRES 6 A 309 TYR ASP TYR SER ARG VAL GLU LEU SER LEU ILE THR SER SEQRES 7 A 309 ASP GLU ASP SER SER TYR ILE ASN ALA ASN PHE ILE LYS SEQRES 8 A 309 GLY VAL TYR GLY PRO LYS ALA TYR ILE ALA THR GLN GLY SEQRES 9 A 309 PRO LEU SER THR THR LEU LEU ASP PHE TRP ARG MET ILE SEQRES 10 A 309 TRP GLU TYR SER VAL LEU ILE ILE VAL MET ALA CYS MET SEQRES 11 A 309 GLU TYR GLU MET GLY LYS LYS LYS CYS GLU ARG TYR TRP SEQRES 12 A 309 ALA GLU PRO GLY GLU MET GLN LEU GLU PHE GLY PRO PHE SEQRES 13 A 309 SER VAL SER CYS GLU ALA GLU LYS ARG LYS SER ASP TYR SEQRES 14 A 309 ILE ILE ARG THR LEU LYS VAL LYS PHE ASN SER GLU THR SEQRES 15 A 309 ARG THR ILE TYR GLN PHE HIS TYR LYS ASN TRP PRO ASP SEQRES 16 A 309 HIS ASP VAL PRO SER SER ILE ASP PRO ILE LEU GLU LEU SEQRES 17 A 309 ILE TRP ASP VAL ARG CYS TYR GLN GLU ASP ASP SER VAL SEQRES 18 A 309 PRO ILE CYS ILE HIS CYS SER ALA GLY CYS GLY ARG THR SEQRES 19 A 309 GLY VAL ILE CYS ALA ILE ASP TYR THR TRP MET LEU LEU SEQRES 20 A 309 LYS ASP GLY ILE ILE PRO GLU ASN PHE SER VAL PHE SER SEQRES 21 A 309 LEU ILE ARG GLU MET ARG THR GLN ARG PRO SER LEU VAL SEQRES 22 A 309 GLN THR GLN GLU GLN TYR GLU LEU VAL TYR ASN ALA VAL SEQRES 23 A 309 LEU GLU LEU PHE LYS ARG GLN MET ASP VAL ILE ARG ASP SEQRES 24 A 309 LYS HIS SER ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 309 MET ASP GLN ARG GLU ILE LEU GLN LYS PHE LEU ASP GLU SEQRES 2 B 309 ALA GLN SER LYS LYS ILE THR LYS GLU GLU PHE ALA ASN SEQRES 3 B 309 GLU PHE LEU LYS LEU LYS ARG GLN SER THR LYS TYR LYS SEQRES 4 B 309 ALA ASP LYS THR TYR PRO THR THR VAL ALA GLU LYS PRO SEQRES 5 B 309 LYS ASN ILE LYS LYS ASN ARG TYR LYS ASP ILE LEU PRO SEQRES 6 B 309 TYR ASP TYR SER ARG VAL GLU LEU SER LEU ILE THR SER SEQRES 7 B 309 ASP GLU ASP SER SER TYR ILE ASN ALA ASN PHE ILE LYS SEQRES 8 B 309 GLY VAL TYR GLY PRO LYS ALA TYR ILE ALA THR GLN GLY SEQRES 9 B 309 PRO LEU SER THR THR LEU LEU ASP PHE TRP ARG MET ILE SEQRES 10 B 309 TRP GLU TYR SER VAL LEU ILE ILE VAL MET ALA CYS MET SEQRES 11 B 309 GLU TYR GLU MET GLY LYS LYS LYS CYS GLU ARG TYR TRP SEQRES 12 B 309 ALA GLU PRO GLY GLU MET GLN LEU GLU PHE GLY PRO PHE SEQRES 13 B 309 SER VAL SER CYS GLU ALA GLU LYS ARG LYS SER ASP TYR SEQRES 14 B 309 ILE ILE ARG THR LEU LYS VAL LYS PHE ASN SER GLU THR SEQRES 15 B 309 ARG THR ILE TYR GLN PHE HIS TYR LYS ASN TRP PRO ASP SEQRES 16 B 309 HIS ASP VAL PRO SER SER ILE ASP PRO ILE LEU GLU LEU SEQRES 17 B 309 ILE TRP ASP VAL ARG CYS TYR GLN GLU ASP ASP SER VAL SEQRES 18 B 309 PRO ILE CYS ILE HIS CYS SER ALA GLY CYS GLY ARG THR SEQRES 19 B 309 GLY VAL ILE CYS ALA ILE ASP TYR THR TRP MET LEU LEU SEQRES 20 B 309 LYS ASP GLY ILE ILE PRO GLU ASN PHE SER VAL PHE SER SEQRES 21 B 309 LEU ILE ARG GLU MET ARG THR GLN ARG PRO SER LEU VAL SEQRES 22 B 309 GLN THR GLN GLU GLN TYR GLU LEU VAL TYR ASN ALA VAL SEQRES 23 B 309 LEU GLU LEU PHE LYS ARG GLN MET ASP VAL ILE ARG ASP SEQRES 24 B 309 LYS HIS SER ALA HIS HIS HIS HIS HIS HIS HET EDO A 601 4 HET EDO A 603 4 HET EDO A 604 4 HET CL B 501 1 HET EDO B 602 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 6 CL CL 1- FORMUL 8 HOH *369(H2 O) HELIX 1 1 ASP A 2 LYS A 17 1 16 HELIX 2 2 THR A 20 ASP A 41 1 22 HELIX 3 3 THR A 46 LYS A 51 1 6 HELIX 4 4 LYS A 51 LYS A 56 1 6 HELIX 5 5 TYR A 66 ARG A 70 5 5 HELIX 6 6 LEU A 106 THR A 108 5 3 HELIX 7 7 THR A 109 TYR A 120 1 12 HELIX 8 8 VAL A 198 SER A 201 5 4 HELIX 9 9 ILE A 202 GLN A 216 1 15 HELIX 10 10 GLY A 232 ASP A 249 1 18 HELIX 11 11 SER A 257 THR A 267 1 11 HELIX 12 12 THR A 275 SER A 302 1 28 HELIX 13 13 GLN B 3 LYS B 17 1 15 HELIX 14 14 THR B 20 LYS B 42 1 23 HELIX 15 15 LYS B 51 LYS B 56 1 6 HELIX 16 16 TYR B 66 TYR B 68 5 3 HELIX 17 17 LEU B 106 THR B 108 5 3 HELIX 18 18 THR B 109 TYR B 120 1 12 HELIX 19 19 VAL B 198 SER B 201 5 4 HELIX 20 20 ILE B 202 GLN B 216 1 15 HELIX 21 21 GLY B 232 ASP B 249 1 18 HELIX 22 22 SER B 257 THR B 267 1 11 HELIX 23 23 THR B 275 ARG B 298 1 24 SHEET 1 A 8 ALA A 87 GLY A 92 0 SHEET 2 A 8 GLY A 95 THR A 102 -1 O GLY A 95 N GLY A 92 SHEET 3 A 8 ILE A 223 HIS A 226 1 O ILE A 225 N ILE A 100 SHEET 4 A 8 ILE A 124 MET A 127 1 N VAL A 126 O CYS A 224 SHEET 5 A 8 GLU A 181 TYR A 190 1 O PHE A 188 N ILE A 125 SHEET 6 A 8 TYR A 169 PHE A 178 -1 N ARG A 172 O GLN A 187 SHEET 7 A 8 PHE A 156 ARG A 165 -1 N ALA A 162 O THR A 173 SHEET 8 A 8 LEU A 151 PHE A 153 -1 N PHE A 153 O PHE A 156 SHEET 1 B 2 TYR A 132 GLU A 133 0 SHEET 2 B 2 LYS A 136 LYS A 137 -1 O LYS A 136 N GLU A 133 SHEET 1 C 9 ARG B 70 GLU B 72 0 SHEET 2 C 9 TYR B 84 ILE B 90 -1 O ALA B 87 N VAL B 71 SHEET 3 C 9 TYR B 99 THR B 102 -1 O ALA B 101 N ASN B 88 SHEET 4 C 9 ILE B 223 HIS B 226 1 O ILE B 225 N ILE B 100 SHEET 5 C 9 ILE B 124 MET B 127 1 N VAL B 126 O CYS B 224 SHEET 6 C 9 GLU B 181 TYR B 190 1 O TYR B 190 N MET B 127 SHEET 7 C 9 TYR B 169 PHE B 178 -1 N ILE B 170 O HIS B 189 SHEET 8 C 9 PHE B 156 ARG B 165 -1 N LYS B 164 O ILE B 171 SHEET 9 C 9 LEU B 151 PHE B 153 -1 N PHE B 153 O PHE B 156 SHEET 1 D 2 TYR B 132 GLU B 133 0 SHEET 2 D 2 LYS B 136 LYS B 137 -1 O LYS B 136 N GLU B 133 SITE 1 AC1 1 TRP B 244 SITE 1 AC2 3 ASP A 62 ALA A 229 GLN A 274 SITE 1 AC3 4 TYR B 60 ASP B 62 ALA B 229 GLN B 274 SITE 1 AC4 2 THR A 36 HOH A 714 SITE 1 AC5 7 ASP A 195 HIS A 196 VAL A 198 PRO A 199 SITE 2 AC5 7 LEU A 281 ASN A 284 HOH A 745 CRYST1 60.961 48.442 119.805 90.00 102.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016404 0.000000 0.003740 0.00000 SCALE2 0.000000 0.020643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008561 0.00000