HEADER METAL BINDING PROTEIN, HYDROLASE 20-MAR-07 2P7L TITLE CRYSTAL STRUCTURE OF MONOCLINIC FORM OF GENOMICALLY ENCODED FOSFOMYCIN TITLE 2 RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES AT PH 5.75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: EGD-E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET20B(+) KEYWDS FOSFOMYCIN RESISTANCE PROTEIN, MN BINDING, ANTIBIOTIC RESISTANCE, KEYWDS 2 METAL BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.FILLGROVE,S.PAKHOMOVA,M.SCHAAB,M.E.NEWCOMER,R.N.ARMSTRONG REVDAT 4 30-AUG-23 2P7L 1 REMARK REVDAT 3 13-JUL-11 2P7L 1 VERSN REVDAT 2 24-FEB-09 2P7L 1 VERSN REVDAT 1 17-JUL-07 2P7L 0 JRNL AUTH K.L.FILLGROVE,S.PAKHOMOVA,M.R.SCHAAB,M.E.NEWCOMER, JRNL AUTH 2 R.N.ARMSTRONG JRNL TITL STRUCTURE AND MECHANISM OF THE GENOMICALLY ENCODED JRNL TITL 2 FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA JRNL TITL 3 MONOCYTOGENES. JRNL REF BIOCHEMISTRY V. 46 8110 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17567049 JRNL DOI 10.1021/BI700625P REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 41370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2359 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 284 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6198 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.34000 REMARK 3 B22 (A**2) : 21.14000 REMARK 3 B33 (A**2) : -4.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.630 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 27.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2P7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 8000, 0.1M NA CITRATE, 4-12 REMARK 280 MM NA ACETATE, 10% GLYCEROL, PH 5.75, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.38950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.34850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.38950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.34850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 49.04172 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -35.34850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 79.46705 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 49.04172 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -35.34850 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 79.46705 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 ASP A 36 REMARK 465 LYS A 37 REMARK 465 THR A 38 REMARK 465 PHE A 39 REMARK 465 TYR A 131 REMARK 465 HIS A 132 REMARK 465 GLU A 133 REMARK 465 ARG B 97 REMARK 465 PRO B 98 REMARK 465 ARG B 99 REMARK 465 VAL B 100 REMARK 465 GLN B 101 REMARK 465 GLY B 102 REMARK 465 HIS B 132 REMARK 465 GLU B 133 REMARK 465 ARG C 130 REMARK 465 TYR C 131 REMARK 465 HIS C 132 REMARK 465 GLU C 133 REMARK 465 GLY D 35 REMARK 465 ASP D 36 REMARK 465 LYS D 37 REMARK 465 THR D 38 REMARK 465 PHE D 39 REMARK 465 SER D 40 REMARK 465 LEU D 41 REMARK 465 HIS D 132 REMARK 465 GLU D 133 REMARK 465 TYR E 131 REMARK 465 HIS E 132 REMARK 465 GLU E 133 REMARK 465 TYR F 131 REMARK 465 HIS F 132 REMARK 465 GLU F 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 40 OG REMARK 470 LEU A 41 CG CD1 CD2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 ARG C 97 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 100 CG1 CG2 REMARK 470 GLN C 101 CG CD OE1 NE2 REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 SER D 42 OG REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 TYR D 131 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU E 103 CG CD OE1 OE2 REMARK 470 GLU E 125 CG CD OE1 OE2 REMARK 470 LYS E 129 CG CD CE NZ REMARK 470 LYS F 43 CG CD CE NZ REMARK 470 GLU F 84 CG CD OE1 OE2 REMARK 470 LYS F 87 CG CD CE NZ REMARK 470 GLN F 101 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 111 -152.00 -100.88 REMARK 500 LEU A 128 44.75 -108.03 REMARK 500 PRO B 95 -4.54 -51.30 REMARK 500 ASP B 111 -145.63 -85.44 REMARK 500 ARG B 130 90.17 -62.40 REMARK 500 SER C 6 -71.99 -79.82 REMARK 500 TYR C 32 127.90 -172.73 REMARK 500 ASP C 36 117.13 -161.53 REMARK 500 ARG C 99 137.16 -39.37 REMARK 500 GLN C 101 -133.83 -69.53 REMARK 500 ASP C 111 -152.14 -92.94 REMARK 500 LEU C 128 -87.33 -72.70 REMARK 500 SER D 33 125.50 -172.56 REMARK 500 LYS D 43 125.93 152.68 REMARK 500 ASP D 111 -152.56 -95.99 REMARK 500 ARG D 130 -70.26 -170.62 REMARK 500 ASP E 111 -149.89 -94.57 REMARK 500 ASN E 114 18.39 57.52 REMARK 500 ASP F 36 110.47 -161.80 REMARK 500 GLU F 77 -70.09 -47.96 REMARK 500 GLU F 78 4.67 -58.08 REMARK 500 GLN F 101 116.38 58.05 REMARK 500 ASP F 111 -159.11 -97.41 REMARK 500 LYS F 129 40.25 -107.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P7K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE REMARK 900 PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (HEXAGONAL FORM) REMARK 900 RELATED ID: 2P7M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE REMARK 900 PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (MONOCLINIC FORM GROWN REMARK 900 AT PH 6.5) REMARK 900 RELATED ID: 2P7O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE REMARK 900 PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (TETRAGONAL FORM) REMARK 900 RELATED ID: 2P7P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE REMARK 900 PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) REMARK 900 AND SULFATE ION REMARK 900 RELATED ID: 2P7Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E126Q MUTANT OF GENOMICALLY ENCODED FOSFOMYCIN REMARK 900 RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED REMARK 900 WITH MN(II) AND 1S,2S-DIHYDROXYPROPYLPHOSPHONIC ACID DBREF 2P7L A 1 133 UNP Q71YW5 Q71YW5_LISMF 1 133 DBREF 2P7L B 1 133 UNP Q71YW5 Q71YW5_LISMF 1 133 DBREF 2P7L C 1 133 UNP Q71YW5 Q71YW5_LISMF 1 133 DBREF 2P7L D 1 133 UNP Q71YW5 Q71YW5_LISMF 1 133 DBREF 2P7L E 1 133 UNP Q71YW5 Q71YW5_LISMF 1 133 DBREF 2P7L F 1 133 UNP Q71YW5 Q71YW5_LISMF 1 133 SEQRES 1 A 133 MET ILE SER GLY LEU SER HIS ILE THR LEU ILE VAL LYS SEQRES 2 A 133 ASP LEU ASN LYS THR THR ALA PHE LEU GLN ASN ILE PHE SEQRES 3 A 133 ASN ALA GLU GLU ILE TYR SER SER GLY ASP LYS THR PHE SEQRES 4 A 133 SER LEU SER LYS GLU LYS PHE PHE LEU ILE ALA GLY LEU SEQRES 5 A 133 TRP ILE CYS ILE MET GLU GLY ASP SER LEU GLN GLU ARG SEQRES 6 A 133 THR TYR ASN HIS ILE ALA PHE GLN ILE GLN SER GLU GLU SEQRES 7 A 133 VAL ASP GLU TYR THR GLU ARG ILE LYS ALA LEU GLY VAL SEQRES 8 A 133 GLU MET LYS PRO GLU ARG PRO ARG VAL GLN GLY GLU GLY SEQRES 9 A 133 ARG SER ILE TYR PHE TYR ASP PHE ASP ASN HIS LEU PHE SEQRES 10 A 133 GLU LEU HIS ALA GLY THR LEU GLU GLU ARG LEU LYS ARG SEQRES 11 A 133 TYR HIS GLU SEQRES 1 B 133 MET ILE SER GLY LEU SER HIS ILE THR LEU ILE VAL LYS SEQRES 2 B 133 ASP LEU ASN LYS THR THR ALA PHE LEU GLN ASN ILE PHE SEQRES 3 B 133 ASN ALA GLU GLU ILE TYR SER SER GLY ASP LYS THR PHE SEQRES 4 B 133 SER LEU SER LYS GLU LYS PHE PHE LEU ILE ALA GLY LEU SEQRES 5 B 133 TRP ILE CYS ILE MET GLU GLY ASP SER LEU GLN GLU ARG SEQRES 6 B 133 THR TYR ASN HIS ILE ALA PHE GLN ILE GLN SER GLU GLU SEQRES 7 B 133 VAL ASP GLU TYR THR GLU ARG ILE LYS ALA LEU GLY VAL SEQRES 8 B 133 GLU MET LYS PRO GLU ARG PRO ARG VAL GLN GLY GLU GLY SEQRES 9 B 133 ARG SER ILE TYR PHE TYR ASP PHE ASP ASN HIS LEU PHE SEQRES 10 B 133 GLU LEU HIS ALA GLY THR LEU GLU GLU ARG LEU LYS ARG SEQRES 11 B 133 TYR HIS GLU SEQRES 1 C 133 MET ILE SER GLY LEU SER HIS ILE THR LEU ILE VAL LYS SEQRES 2 C 133 ASP LEU ASN LYS THR THR ALA PHE LEU GLN ASN ILE PHE SEQRES 3 C 133 ASN ALA GLU GLU ILE TYR SER SER GLY ASP LYS THR PHE SEQRES 4 C 133 SER LEU SER LYS GLU LYS PHE PHE LEU ILE ALA GLY LEU SEQRES 5 C 133 TRP ILE CYS ILE MET GLU GLY ASP SER LEU GLN GLU ARG SEQRES 6 C 133 THR TYR ASN HIS ILE ALA PHE GLN ILE GLN SER GLU GLU SEQRES 7 C 133 VAL ASP GLU TYR THR GLU ARG ILE LYS ALA LEU GLY VAL SEQRES 8 C 133 GLU MET LYS PRO GLU ARG PRO ARG VAL GLN GLY GLU GLY SEQRES 9 C 133 ARG SER ILE TYR PHE TYR ASP PHE ASP ASN HIS LEU PHE SEQRES 10 C 133 GLU LEU HIS ALA GLY THR LEU GLU GLU ARG LEU LYS ARG SEQRES 11 C 133 TYR HIS GLU SEQRES 1 D 133 MET ILE SER GLY LEU SER HIS ILE THR LEU ILE VAL LYS SEQRES 2 D 133 ASP LEU ASN LYS THR THR ALA PHE LEU GLN ASN ILE PHE SEQRES 3 D 133 ASN ALA GLU GLU ILE TYR SER SER GLY ASP LYS THR PHE SEQRES 4 D 133 SER LEU SER LYS GLU LYS PHE PHE LEU ILE ALA GLY LEU SEQRES 5 D 133 TRP ILE CYS ILE MET GLU GLY ASP SER LEU GLN GLU ARG SEQRES 6 D 133 THR TYR ASN HIS ILE ALA PHE GLN ILE GLN SER GLU GLU SEQRES 7 D 133 VAL ASP GLU TYR THR GLU ARG ILE LYS ALA LEU GLY VAL SEQRES 8 D 133 GLU MET LYS PRO GLU ARG PRO ARG VAL GLN GLY GLU GLY SEQRES 9 D 133 ARG SER ILE TYR PHE TYR ASP PHE ASP ASN HIS LEU PHE SEQRES 10 D 133 GLU LEU HIS ALA GLY THR LEU GLU GLU ARG LEU LYS ARG SEQRES 11 D 133 TYR HIS GLU SEQRES 1 E 133 MET ILE SER GLY LEU SER HIS ILE THR LEU ILE VAL LYS SEQRES 2 E 133 ASP LEU ASN LYS THR THR ALA PHE LEU GLN ASN ILE PHE SEQRES 3 E 133 ASN ALA GLU GLU ILE TYR SER SER GLY ASP LYS THR PHE SEQRES 4 E 133 SER LEU SER LYS GLU LYS PHE PHE LEU ILE ALA GLY LEU SEQRES 5 E 133 TRP ILE CYS ILE MET GLU GLY ASP SER LEU GLN GLU ARG SEQRES 6 E 133 THR TYR ASN HIS ILE ALA PHE GLN ILE GLN SER GLU GLU SEQRES 7 E 133 VAL ASP GLU TYR THR GLU ARG ILE LYS ALA LEU GLY VAL SEQRES 8 E 133 GLU MET LYS PRO GLU ARG PRO ARG VAL GLN GLY GLU GLY SEQRES 9 E 133 ARG SER ILE TYR PHE TYR ASP PHE ASP ASN HIS LEU PHE SEQRES 10 E 133 GLU LEU HIS ALA GLY THR LEU GLU GLU ARG LEU LYS ARG SEQRES 11 E 133 TYR HIS GLU SEQRES 1 F 133 MET ILE SER GLY LEU SER HIS ILE THR LEU ILE VAL LYS SEQRES 2 F 133 ASP LEU ASN LYS THR THR ALA PHE LEU GLN ASN ILE PHE SEQRES 3 F 133 ASN ALA GLU GLU ILE TYR SER SER GLY ASP LYS THR PHE SEQRES 4 F 133 SER LEU SER LYS GLU LYS PHE PHE LEU ILE ALA GLY LEU SEQRES 5 F 133 TRP ILE CYS ILE MET GLU GLY ASP SER LEU GLN GLU ARG SEQRES 6 F 133 THR TYR ASN HIS ILE ALA PHE GLN ILE GLN SER GLU GLU SEQRES 7 F 133 VAL ASP GLU TYR THR GLU ARG ILE LYS ALA LEU GLY VAL SEQRES 8 F 133 GLU MET LYS PRO GLU ARG PRO ARG VAL GLN GLY GLU GLY SEQRES 9 F 133 ARG SER ILE TYR PHE TYR ASP PHE ASP ASN HIS LEU PHE SEQRES 10 F 133 GLU LEU HIS ALA GLY THR LEU GLU GLU ARG LEU LYS ARG SEQRES 11 F 133 TYR HIS GLU HET GOL B 134 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *96(H2 O) HELIX 1 1 ASP A 14 ASN A 27 1 14 HELIX 2 2 GLN A 75 GLU A 77 5 3 HELIX 3 3 GLU A 78 LEU A 89 1 12 HELIX 4 4 ASP B 14 ASN B 27 1 14 HELIX 5 5 LYS B 37 SER B 40 5 4 HELIX 6 6 GLN B 75 GLU B 77 5 3 HELIX 7 7 GLU B 78 ALA B 88 1 11 HELIX 8 8 THR B 123 LEU B 128 1 6 HELIX 9 9 ASP C 14 PHE C 26 1 13 HELIX 10 10 LYS C 37 SER C 40 5 4 HELIX 11 11 GLN C 75 GLU C 77 5 3 HELIX 12 12 GLU C 78 LEU C 89 1 12 HELIX 13 13 THR C 123 LYS C 129 1 7 HELIX 14 14 ASP D 14 ASN D 27 1 14 HELIX 15 15 GLN D 75 GLU D 77 5 3 HELIX 16 16 GLU D 78 ALA D 88 1 11 HELIX 17 17 THR D 123 LEU D 128 1 6 HELIX 18 18 ASP E 14 PHE E 26 1 13 HELIX 19 19 LYS E 37 SER E 40 5 4 HELIX 20 20 GLN E 75 GLU E 77 5 3 HELIX 21 21 GLU E 78 LEU E 89 1 12 HELIX 22 22 GLU E 125 LYS E 129 5 5 HELIX 23 23 ASP F 14 ASN F 27 1 14 HELIX 24 24 GLU F 78 LEU F 89 1 12 HELIX 25 25 THR F 123 LEU F 128 1 6 SHEET 1 A 8 GLU A 29 SER A 33 0 SHEET 2 A 8 GLU A 44 ILE A 49 -1 O PHE A 46 N ILE A 31 SHEET 3 A 8 LEU A 52 GLU A 58 -1 O ILE A 54 N PHE A 47 SHEET 4 A 8 GLY A 4 VAL A 12 1 N ILE A 8 O CYS A 55 SHEET 5 A 8 HIS B 69 ILE B 74 -1 O HIS B 69 N THR A 9 SHEET 6 A 8 LEU B 116 ALA B 121 1 O HIS B 120 N PHE B 72 SHEET 7 A 8 SER B 106 TYR B 110 -1 N PHE B 109 O PHE B 117 SHEET 8 A 8 MET B 93 LYS B 94 -1 N LYS B 94 O TYR B 108 SHEET 1 B 7 SER A 106 TYR A 110 0 SHEET 2 B 7 LEU A 116 HIS A 120 -1 O PHE A 117 N PHE A 109 SHEET 3 B 7 HIS A 69 GLN A 73 1 N PHE A 72 O GLU A 118 SHEET 4 B 7 GLY B 4 VAL B 12 -1 O GLY B 4 N GLN A 73 SHEET 5 B 7 LEU B 52 GLU B 58 1 O CYS B 55 N ILE B 8 SHEET 6 B 7 LEU B 41 ILE B 49 -1 N ILE B 49 O LEU B 52 SHEET 7 B 7 GLU B 29 ASP B 36 -1 N ILE B 31 O PHE B 46 SHEET 1 C 8 GLU C 29 ASP C 36 0 SHEET 2 C 8 LEU C 41 ILE C 49 -1 O LEU C 41 N ASP C 36 SHEET 3 C 8 LEU C 52 GLU C 58 -1 O LEU C 52 N ILE C 49 SHEET 4 C 8 GLY C 4 VAL C 12 1 N VAL C 12 O MET C 57 SHEET 5 C 8 HIS D 69 ILE D 74 -1 O ALA D 71 N SER C 6 SHEET 6 C 8 LEU D 116 ALA D 121 1 O GLU D 118 N PHE D 72 SHEET 7 C 8 SER D 106 TYR D 110 -1 N PHE D 109 O PHE D 117 SHEET 8 C 8 MET D 93 LYS D 94 -1 N LYS D 94 O TYR D 108 SHEET 1 D 7 SER C 106 TYR C 110 0 SHEET 2 D 7 LEU C 116 HIS C 120 -1 O PHE C 117 N PHE C 109 SHEET 3 D 7 HIS C 69 GLN C 73 1 N PHE C 72 O HIS C 120 SHEET 4 D 7 GLY D 4 VAL D 12 -1 O GLY D 4 N GLN C 73 SHEET 5 D 7 LEU D 52 GLU D 58 1 O MET D 57 N VAL D 12 SHEET 6 D 7 GLU D 44 ILE D 49 -1 N PHE D 47 O ILE D 54 SHEET 7 D 7 GLU D 29 SER D 33 -1 N ILE D 31 O PHE D 46 SHEET 1 E 8 GLU E 29 ASP E 36 0 SHEET 2 E 8 LEU E 41 ILE E 49 -1 O LEU E 48 N GLU E 29 SHEET 3 E 8 LEU E 52 GLU E 58 -1 O ILE E 54 N PHE E 47 SHEET 4 E 8 GLY E 4 VAL E 12 1 N LEU E 10 O MET E 57 SHEET 5 E 8 HIS F 69 ILE F 74 -1 O GLN F 73 N GLY E 4 SHEET 6 E 8 LEU F 116 ALA F 121 1 O HIS F 120 N PHE F 72 SHEET 7 E 8 ARG F 105 TYR F 110 -1 N PHE F 109 O PHE F 117 SHEET 8 E 8 MET F 93 LYS F 94 -1 N LYS F 94 O TYR F 108 SHEET 1 F 7 ARG E 105 TYR E 110 0 SHEET 2 F 7 LEU E 116 ALA E 121 -1 O PHE E 117 N PHE E 109 SHEET 3 F 7 HIS E 69 ILE E 74 1 N PHE E 72 O GLU E 118 SHEET 4 F 7 GLY F 4 VAL F 12 -1 O GLY F 4 N GLN E 73 SHEET 5 F 7 LEU F 52 GLU F 58 1 O CYS F 55 N ILE F 8 SHEET 6 F 7 LEU F 41 ILE F 49 -1 N PHE F 47 O ILE F 54 SHEET 7 F 7 GLU F 29 ASP F 36 -1 N ILE F 31 O PHE F 46 SITE 1 AC1 4 THR A 9 PHE A 46 TYR B 67 ARG B 127 CRYST1 168.779 70.697 86.974 90.00 113.98 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005925 0.000000 0.002635 0.00000 SCALE2 0.000000 0.014145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012584 0.00000