HEADER BINDING PROTEIN(CALCIUM) 22-MAR-94 2PAS TITLE COMPARISON BETWEEN THE CRYSTAL AND THE SOLUTION STRUCTURES OF THE EF TITLE 2 HAND PARVALBUMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARVALBUMIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESOX LUCIUS; SOURCE 3 ORGANISM_COMMON: NORTHERN PIKE; SOURCE 4 ORGANISM_TAXID: 8010 KEYWDS BINDING PROTEIN(CALCIUM) EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR A.PADILLA,A.CAVE,J.PARELLO,G.ETIENNE,C.BALDELLON REVDAT 3 16-MAR-22 2PAS 1 REMARK LINK REVDAT 2 24-FEB-09 2PAS 1 VERSN REVDAT 1 22-JUN-94 2PAS 0 JRNL AUTH A.PADILLA,A.CAVE,J.PARELLO,G.ETIENNE,C.BALDELLON JRNL TITL COMPARISON BETWEEN THE CRYSTAL AND THE SOLUTION STRUCTURES JRNL TITL 2 OF THE EF HAND PARVALBUMIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.BLANCUZZI,A.PADILLA,J.PARELLO,A.CAVE REMARK 1 TITL SYMMETRICAL REARRANGEMENT OF CATION-BINDING SITES OF REMARK 1 TITL 2 PARVALBUMIN UPON CA2+(SLASH)MG2+ EXCHANGE. A STUDY BY 1H 2D REMARK 1 TITL 3 NMR REMARK 1 REF BIOCHEMISTRY V. 32 1302 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.PADILLA,G.W.VUISTER,R.BOELENS,G.KLEYWEGT,A.CAVE,J.PARELLO, REMARK 1 AUTH 2 R.KAPTEIN REMARK 1 TITL HOMONUCLEAR THREE-DIMENSIONAL 1H NMR SPECTROSCOPY OF PIKE REMARK 1 TITL 2 PARVALBUMIN. COMPARISON OF SHORT-AND MEDIUM-RANGE NOES FROM REMARK 1 TITL 3 2D AND 3D NMR REMARK 1 REF J.AM.CHEM.SOC. V. 112 5024 1990 REMARK 1 REFN ISSN 0002-7863 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.PADILLA,A.CAVE,J.PARELLO REMARK 1 TITL TWO-DIMENSIONAL 1H NUCLEAR MAGNETIC RESONANCE STUDY OF PIKE REMARK 1 TITL 2 PI 5.0 PARVALBUMIN (ESOX LUCIUS): SEQUENTIAL RESONANCE REMARK 1 TITL 3 ASSIGNMENTS AND FOLDING OF THE POLYPEPTIDE CHAIN REMARK 1 REF J.MOL.BIOL. V. 204 995 1988 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PAS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178439. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 -167.80 -115.95 REMARK 500 1 ALA A 8 -75.75 79.28 REMARK 500 1 LYS A 19 -31.84 -32.80 REMARK 500 1 ALA A 20 173.38 -47.06 REMARK 500 1 HIS A 26 -28.11 140.92 REMARK 500 1 ASP A 51 83.98 -60.72 REMARK 500 1 LEU A 67 38.11 -90.44 REMARK 500 1 LEU A 77 150.45 -41.10 REMARK 500 1 ASP A 79 -62.10 105.90 REMARK 500 1 ASP A 90 91.55 -66.08 REMARK 500 1 ILE A 99 -75.49 -72.18 REMARK 500 1 ASP A 100 -37.75 -37.24 REMARK 500 2 ALA A 20 174.07 -55.84 REMARK 500 2 HIS A 26 -39.16 97.68 REMARK 500 2 ALA A 40 -28.36 -36.27 REMARK 500 2 ASP A 51 83.18 -61.40 REMARK 500 2 VAL A 66 -32.75 -39.46 REMARK 500 2 LEU A 67 44.06 -103.77 REMARK 500 2 ALA A 71 117.63 -164.80 REMARK 500 2 ASP A 79 -62.15 121.33 REMARK 500 2 ILE A 99 -72.24 -72.01 REMARK 500 2 ASP A 100 -36.87 -37.53 REMARK 500 3 LYS A 7 37.79 -168.15 REMARK 500 3 ALA A 8 -122.26 -147.86 REMARK 500 3 HIS A 26 -34.97 -31.26 REMARK 500 3 LYS A 36 -27.51 -39.02 REMARK 500 3 ALA A 37 65.68 -177.04 REMARK 500 3 SER A 39 113.75 -172.79 REMARK 500 3 ALA A 40 -33.90 -32.98 REMARK 500 3 ALA A 54 54.00 36.56 REMARK 500 3 VAL A 66 -26.01 -37.46 REMARK 500 3 ALA A 71 125.98 -170.18 REMARK 500 3 ASP A 73 49.22 -149.35 REMARK 500 3 ASP A 76 108.22 66.90 REMARK 500 3 ASP A 79 -61.79 108.26 REMARK 500 3 LYS A 91 -52.99 173.74 REMARK 500 3 ILE A 99 -77.06 -70.03 REMARK 500 3 ASP A 100 -38.12 -39.94 REMARK 500 4 LYS A 7 40.55 162.96 REMARK 500 4 ALA A 8 -132.86 -146.11 REMARK 500 4 VAL A 18 40.73 -142.06 REMARK 500 4 ALA A 20 -172.41 -67.47 REMARK 500 4 ASN A 25 -87.37 -120.86 REMARK 500 4 HIS A 26 -28.33 170.98 REMARK 500 4 LEU A 35 -37.14 -36.69 REMARK 500 4 SER A 39 116.87 60.56 REMARK 500 4 ALA A 40 -25.97 -37.49 REMARK 500 4 ALA A 52 -47.94 -29.11 REMARK 500 4 ASP A 53 39.93 -87.35 REMARK 500 4 ALA A 54 35.60 29.35 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 75 0.22 SIDE CHAIN REMARK 500 2 ARG A 75 0.29 SIDE CHAIN REMARK 500 3 ARG A 75 0.09 SIDE CHAIN REMARK 500 4 ARG A 75 0.15 SIDE CHAIN REMARK 500 5 ARG A 75 0.25 SIDE CHAIN REMARK 500 6 ARG A 75 0.19 SIDE CHAIN REMARK 500 7 ARG A 75 0.12 SIDE CHAIN REMARK 500 8 ARG A 75 0.28 SIDE CHAIN REMARK 500 9 ARG A 75 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 110 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 53 OD1 65.4 REMARK 620 3 ASP A 53 OD2 109.8 44.4 REMARK 620 4 PHE A 57 O 57.2 113.3 146.6 REMARK 620 5 GLU A 62 OE2 78.0 78.5 88.4 59.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 111 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 OD1 REMARK 620 2 ASP A 92 OD1 67.7 REMARK 620 3 ASP A 94 OD1 63.3 54.7 REMARK 620 4 LYS A 96 O 94.0 119.4 65.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CD REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: EF REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 111 DBREF 2PAS A 2 109 UNP P02628 PRVA_ESOLU 1 108 SEQRES 1 A 110 ACE ALA ALA LYS ASP LEU LEU LYS ALA ASP ASP ILE LYS SEQRES 2 A 110 LYS ALA LEU ASP ALA VAL LYS ALA GLU GLY SER PHE ASN SEQRES 3 A 110 HIS LYS LYS PHE PHE ALA LEU VAL GLY LEU LYS ALA MET SEQRES 4 A 110 SER ALA ASN ASP VAL LYS LYS VAL PHE LYS ALA ILE ASP SEQRES 5 A 110 ALA ASP ALA SER GLY PHE ILE GLU GLU GLU GLU LEU LYS SEQRES 6 A 110 PHE VAL LEU LYS SER PHE ALA ALA ASP GLY ARG ASP LEU SEQRES 7 A 110 THR ASP ALA GLU THR LYS ALA PHE LEU LYS ALA ALA ASP SEQRES 8 A 110 LYS ASP GLY ASP GLY LYS ILE GLY ILE ASP GLU PHE GLU SEQRES 9 A 110 THR LEU VAL HIS GLU ALA HET ACE A 0 3 HET CA A 110 1 HET CA A 111 1 HETNAM ACE ACETYL GROUP HETNAM CA CALCIUM ION FORMUL 1 ACE C2 H4 O FORMUL 2 CA 2(CA 2+) HELIX 1 A ASP A 9 VAL A 18 1 10 HELIX 2 B HIS A 26 VAL A 33 1 8 HELIX 3 C ALA A 40 ILE A 50 1 11 HELIX 4 D GLU A 60 ALA A 71 1BENDING AT RESIDUE 65 12 HELIX 5 E ASP A 79 ALA A 89 1 11 HELIX 6 F ILE A 99 GLU A 108 1 10 LINK C ACE A 0 N ALA A 1 1555 1555 1.31 LINK OD1 ASP A 51 CA CA A 110 1555 1555 2.93 LINK OD1 ASP A 53 CA CA A 110 1555 1555 2.47 LINK OD2 ASP A 53 CA CA A 110 1555 1555 3.05 LINK O PHE A 57 CA CA A 110 1555 1555 2.46 LINK OE2 GLU A 62 CA CA A 110 1555 1555 2.97 LINK OD1 ASP A 90 CA CA A 111 1555 1555 2.48 LINK OD1 ASP A 92 CA CA A 111 1555 1555 2.63 LINK OD1 ASP A 94 CA CA A 111 1555 1555 2.71 LINK O LYS A 96 CA CA A 111 1555 1555 2.88 SITE 1 CD 12 ASP A 51 ALA A 52 ASP A 53 ALA A 54 SITE 2 CD 12 SER A 55 GLY A 56 PHE A 57 ILE A 58 SITE 3 CD 12 GLU A 59 GLU A 60 GLU A 61 GLU A 62 SITE 1 EF 12 ASP A 90 LYS A 91 ASP A 92 GLY A 93 SITE 2 EF 12 ASP A 94 GLY A 95 LYS A 96 ILE A 97 SITE 3 EF 12 GLY A 98 ILE A 99 ASP A 100 GLU A 101 SITE 1 AC1 6 ASP A 51 ASP A 53 SER A 55 PHE A 57 SITE 2 AC1 6 GLU A 59 GLU A 62 SITE 1 AC2 6 ASP A 90 ASP A 92 ASP A 94 LYS A 96 SITE 2 AC2 6 ILE A 97 GLU A 101 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C ACE A 0 -1.182 7.784 11.299 1.00 0.00 C HETATM 2 O ACE A 0 -0.158 7.974 11.926 1.00 0.00 O HETATM 3 CH3 ACE A 0 -2.160 6.677 11.697 1.00 0.00 C