data_2PCV # _entry.id 2PCV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PCV pdb_00002pcv 10.2210/pdb2pcv/pdb RCSB RCSB042235 ? ? WWPDB D_1000042235 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PCV _pdbx_database_status.recvd_initial_deposition_date 2007-03-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2PCW _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jin, H.' 1 'Loria, J.P.' 2 'Moore, P.B.' 3 # _citation.id primary _citation.title 'Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 26 _citation.page_first 205 _citation.page_last 215 _citation.year 2007 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17466623 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2007.03.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jin, H.' 1 ? primary 'Loria, J.P.' 2 ? primary 'Moore, P.B.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'U65 Box H/ACA snoRNA' _entity.formula_weight 11233.758 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA hairpin containing the pseudouridylation pocket' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACCCGCCACUGCAGAGAUGCAAUCCAGUGGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACCCGCCACUGCAGAGAUGCAAUCCAGUGGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 C n 1 6 C n 1 7 G n 1 8 C n 1 9 C n 1 10 A n 1 11 C n 1 12 U n 1 13 G n 1 14 C n 1 15 A n 1 16 G n 1 17 A n 1 18 G n 1 19 A n 1 20 U n 1 21 G n 1 22 C n 1 23 A n 1 24 A n 1 25 U n 1 26 C n 1 27 C n 1 28 A n 1 29 G n 1 30 U n 1 31 G n 1 32 G n 1 33 U n 1 34 C n 1 35 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;Synthesized by in vitro transcription using T7 RNA polymerase from linearized plasmid DNA. This sequence naturally occurs in humans. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 U 30 30 30 U U A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 34 C C A . n A 1 35 C 35 35 35 C C A . n # _exptl.entry_id 2PCV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 2PCV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2PCV _struct.title 'Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PCV _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'box H/ACA snoRNA, pseudouridylation, rRNA, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2PCV _struct_ref.pdbx_db_accession 2PCV _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PCV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 35 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2PCV _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 35 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 35 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 2 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 2 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 2 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A G 32 O6 ? ? A A 3 A G 32 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog8 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 33 N3 ? ? A A 3 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 33 O4 ? ? A A 3 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 5 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 5 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 5 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 13 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 13 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 13 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 14 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 14 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 14 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 15 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 15 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" A A 10 ? ? "O4'" A C 11 ? ? 1.53 2 1 "HO2'" A C 14 ? ? "O4'" A A 15 ? ? 1.57 3 2 "HO2'" A C 14 ? ? "O4'" A A 15 ? ? 1.55 4 2 "HO2'" A A 23 ? ? "O5'" A A 24 ? ? 1.58 5 3 "HO2'" A A 10 ? ? "O4'" A C 11 ? ? 1.59 6 3 "HO2'" A G 32 ? ? "O4'" A U 33 ? ? 1.60 7 5 "HO2'" A C 9 ? ? "O4'" A A 10 ? ? 1.58 8 7 "HO2'" A U 12 ? ? "O4'" A G 13 ? ? 1.56 9 8 "HO2'" A C 14 ? ? "O4'" A A 15 ? ? 1.53 10 8 "HO2'" A A 10 ? ? "O4'" A C 11 ? ? 1.58 11 8 "HO2'" A A 23 ? ? "O5'" A A 24 ? ? 1.60 12 10 "HO2'" A A 10 ? ? "O4'" A C 11 ? ? 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.96 118.60 -4.64 0.60 N 2 1 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.51 118.00 -4.49 0.70 N 3 1 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 109.84 116.20 -6.36 0.90 N 4 1 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 124.46 119.90 4.56 0.70 N 5 1 N1 A A 23 ? ? C6 A A 23 ? ? N6 A A 23 ? ? 114.26 118.60 -4.34 0.60 N 6 1 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.78 116.20 -5.42 0.90 N 7 1 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.26 119.90 4.36 0.70 N 8 1 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 112.56 118.00 -5.44 0.70 N 9 2 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.12 118.60 -4.48 0.60 N 10 2 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.54 118.00 -4.46 0.70 N 11 2 C5 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 124.44 120.20 4.24 0.70 N 12 2 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 110.24 116.20 -5.96 0.90 N 13 2 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 114.28 118.60 -4.32 0.60 N 14 2 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.78 116.20 -5.42 0.90 N 15 2 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.20 116.20 -6.00 0.90 N 16 2 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.60 119.90 4.70 0.70 N 17 2 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 112.65 118.00 -5.35 0.70 N 18 3 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.25 118.60 -4.35 0.60 N 19 3 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.66 118.00 -4.34 0.70 N 20 3 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 109.52 116.20 -6.68 0.90 N 21 3 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.76 119.90 5.86 0.70 N 22 3 N3 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 113.41 118.00 -4.59 0.70 N 23 3 N1 A C 22 ? ? C2 A C 22 ? ? O2 A C 22 ? ? 122.54 118.90 3.64 0.60 N 24 3 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 109.99 116.20 -6.21 0.90 N 25 3 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.98 119.90 5.08 0.70 N 26 3 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 113.11 118.00 -4.89 0.70 N 27 4 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.37 118.60 -4.23 0.60 N 28 4 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.74 118.00 -4.26 0.70 N 29 4 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 110.30 116.20 -5.90 0.90 N 30 4 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 124.73 119.90 4.83 0.70 N 31 4 N1 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 110.10 116.20 -6.10 0.90 N 32 4 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 113.16 118.00 -4.84 0.70 N 33 4 C5 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 124.83 120.20 4.63 0.70 N 34 4 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.31 116.20 -5.89 0.90 N 35 4 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.13 116.20 -6.07 0.90 N 36 4 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.73 119.90 4.83 0.70 N 37 4 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 113.35 118.00 -4.65 0.70 N 38 5 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.25 118.60 -4.35 0.60 N 39 5 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.39 118.00 -4.61 0.70 N 40 5 C5 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 124.64 120.20 4.44 0.70 N 41 5 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 109.86 116.20 -6.34 0.90 N 42 5 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.18 119.90 5.28 0.70 N 43 5 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 114.37 108.50 5.87 0.70 N 44 5 N1 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 109.93 116.20 -6.27 0.90 N 45 5 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 113.45 118.00 -4.55 0.70 N 46 5 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.36 116.20 -5.84 0.90 N 47 5 N3 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 124.13 119.90 4.23 0.70 N 48 5 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.57 116.20 -5.63 0.90 N 49 5 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.39 119.90 4.49 0.70 N 50 5 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 112.62 118.00 -5.38 0.70 N 51 6 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.16 118.60 -4.44 0.60 N 52 6 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 110.16 116.20 -6.04 0.90 N 53 6 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 124.96 119.90 5.06 0.70 N 54 6 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.72 108.50 4.22 0.70 N 55 6 N3 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 112.04 118.00 -5.96 0.70 N 56 6 C5 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 125.50 120.20 5.30 0.70 N 57 6 N1 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 110.65 116.20 -5.55 0.90 N 58 6 N3 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 124.56 119.90 4.66 0.70 N 59 6 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 113.17 118.00 -4.83 0.70 N 60 6 C5 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 125.07 120.20 4.87 0.70 N 61 6 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.22 116.20 -5.98 0.90 N 62 6 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.37 116.20 -5.83 0.90 N 63 6 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.62 119.90 4.72 0.70 N 64 6 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 112.78 118.00 -5.22 0.70 N 65 7 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.19 118.60 -4.41 0.60 N 66 7 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.73 118.00 -4.27 0.70 N 67 7 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 110.37 116.20 -5.83 0.90 N 68 7 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 124.77 119.90 4.87 0.70 N 69 7 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.93 108.50 5.43 0.70 N 70 7 N3 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 112.02 118.00 -5.98 0.70 N 71 7 C5 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 125.80 120.20 5.60 0.70 N 72 7 N1 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 110.40 116.20 -5.80 0.90 N 73 7 N3 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 124.56 119.90 4.66 0.70 N 74 7 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 113.77 118.00 -4.23 0.70 N 75 7 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.36 116.20 -5.84 0.90 N 76 7 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 112.85 118.00 -5.15 0.70 N 77 8 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.66 118.60 -4.94 0.60 N 78 8 N1 A C 4 ? ? C2 A C 4 ? ? O2 A C 4 ? ? 122.57 118.90 3.67 0.60 N 79 8 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.48 118.00 -4.52 0.70 N 80 8 C5 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 124.47 120.20 4.27 0.70 N 81 8 "C5'" A A 17 ? ? "C4'" A A 17 ? ? "O4'" A A 17 ? ? 117.57 109.80 7.77 0.90 N 82 8 "C1'" A A 17 ? ? "O4'" A A 17 ? ? "C4'" A A 17 ? ? 103.58 109.70 -6.12 0.70 N 83 8 "O4'" A A 17 ? ? "C1'" A A 17 ? ? "C2'" A A 17 ? ? 113.91 107.60 6.31 0.90 N 84 8 "O4'" A A 17 ? ? "C1'" A A 17 ? ? N9 A A 17 ? ? 119.13 108.50 10.63 0.70 N 85 8 "C1'" A G 18 ? ? "O4'" A G 18 ? ? "C4'" A G 18 ? ? 104.91 109.70 -4.79 0.70 N 86 8 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 116.45 108.50 7.95 0.70 N 87 8 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 113.63 118.00 -4.37 0.70 N 88 8 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.52 116.20 -5.68 0.90 N 89 8 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.15 116.20 -6.05 0.90 N 90 8 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 125.22 119.90 5.32 0.70 N 91 8 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 113.11 118.00 -4.89 0.70 N 92 9 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.33 118.60 -4.27 0.60 N 93 9 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.54 118.00 -4.46 0.70 N 94 9 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 110.03 116.20 -6.17 0.90 N 95 9 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.23 119.90 5.33 0.70 N 96 9 N3 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 112.35 118.00 -5.65 0.70 N 97 9 C5 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 125.23 120.20 5.03 0.70 N 98 9 N1 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 110.49 116.20 -5.71 0.90 N 99 9 N3 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 124.37 119.90 4.47 0.70 N 100 9 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 113.77 118.00 -4.23 0.70 N 101 9 N1 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 110.30 116.20 -5.90 0.90 N 102 9 N3 A G 32 ? ? C2 A G 32 ? ? N2 A G 32 ? ? 124.90 119.90 5.00 0.70 N 103 9 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 113.23 118.00 -4.77 0.70 N 104 10 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.39 118.60 -4.21 0.60 N 105 10 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.78 118.00 -4.22 0.70 N 106 10 N1 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 110.03 116.20 -6.17 0.90 N 107 10 N3 A G 13 ? ? C2 A G 13 ? ? N2 A G 13 ? ? 125.17 119.90 5.27 0.70 N 108 10 C5 A G 13 ? ? C6 A G 13 ? ? O6 A G 13 ? ? 132.43 128.60 3.83 0.60 N 109 10 N3 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 113.00 118.00 -5.00 0.70 N 110 10 C5 A C 14 ? ? C4 A C 14 ? ? N4 A C 14 ? ? 124.69 120.20 4.49 0.70 N 111 10 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 114.29 108.50 5.79 0.70 N 112 10 N3 A G 21 ? ? C2 A G 21 ? ? N2 A G 21 ? ? 124.23 119.90 4.33 0.70 N 113 10 N3 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 112.76 118.00 -5.24 0.70 N 114 10 C5 A C 22 ? ? C4 A C 22 ? ? N4 A C 22 ? ? 125.62 120.20 5.42 0.70 N 115 10 N1 A G 31 ? ? C2 A G 31 ? ? N2 A G 31 ? ? 110.20 116.20 -6.00 0.90 N 116 10 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 112.75 118.00 -5.25 0.70 N # _pdbx_nmr_ensemble.entry_id 2PCV _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2PCV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 Unlabeled '90% H2O/10% D2O' 2 'Uniform labeling with 15N: U-15N Uniform labeling with 13C: U-13C' '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 6.5 '5 mM cacodylate, 50 mM NaCl and 0.1 mM EDTA.' ? K 2 298 ambient 6.5 '5 mM cacodylate, 50 mM NaCl and 0.1 mM EDTA' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 2 '2D NOESY' 1 3 2 DQF-COSY 1 4 1 15N-HSQC 2 5 2 13C-HSQC 2 6 1 15N-NOESYHSQC 2 7 2 13C-NOESYHSQC 2 8 2 HCCH/COSY/RELAY/TOCSY 2 9 2 31P-HETCOR 1 # _pdbx_nmr_details.entry_id 2PCV _pdbx_nmr_details.text 'SEE PAPER FOR MORE DETAILS' # _pdbx_nmr_refine.entry_id 2PCV _pdbx_nmr_refine.method 'torsion angle dynamics,simulated annealing' _pdbx_nmr_refine.details 'described in the primary citation' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe ? ? 1 refinement 'CNS 1.1' ? ? 2 processing 'SPARKY 3.1' ? ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2PCV 'double helix' 2PCV 'a-form double helix' 2PCV 'hairpin loop' 2PCV 'mismatched base pair' 2PCV 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 35 1_555 -0.284 -0.040 0.779 42.808 26.312 0.104 1 A_G1:C35_A A 1 ? A 35 ? 19 1 1 A G 2 1_555 A C 34 1_555 0.898 -0.690 1.537 8.277 -1.209 -10.537 2 A_G2:C34_A A 2 ? A 34 ? 19 1 1 A A 3 1_555 A U 33 1_555 -0.614 -0.724 1.190 -9.058 -1.277 -18.074 3 A_A3:U33_A A 3 ? A 33 ? 20 1 1 A C 4 1_555 A G 32 1_555 -0.983 -0.845 1.676 -10.413 3.428 -1.021 4 A_C4:G32_A A 4 ? A 32 ? 19 1 1 A C 5 1_555 A G 31 1_555 -0.677 -0.332 1.145 -15.872 2.438 3.178 5 A_C5:G31_A A 5 ? A 31 ? 19 1 1 A U 12 1_555 A A 23 1_555 0.602 -0.636 -0.934 -15.906 12.345 -23.379 6 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A G 13 1_555 A C 22 1_555 0.471 -0.038 -0.011 16.743 9.109 6.001 7 A_G13:C22_A A 13 ? A 22 ? 19 1 1 A C 14 1_555 A G 21 1_555 0.633 -0.293 0.004 -5.082 15.357 0.655 8 A_C14:G21_A A 14 ? A 21 ? 19 1 1 A A 15 1_555 A U 20 1_555 -0.460 -0.110 0.617 35.822 9.037 -1.205 9 A_A15:U20_A A 15 ? A 20 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 35 1_555 A G 2 1_555 A C 34 1_555 -0.043 -1.583 6.707 -0.968 -0.811 34.573 -2.406 -0.234 6.740 -1.364 1.628 34.596 1 AA_G1G2:C34C35_AA A 1 ? A 35 ? A 2 ? A 34 ? 1 A G 2 1_555 A C 34 1_555 A A 3 1_555 A U 33 1_555 0.404 -1.580 4.513 4.443 2.087 28.514 -3.799 0.543 4.399 4.198 -8.937 28.925 2 AA_G2A3:U33C34_AA A 2 ? A 34 ? A 3 ? A 33 ? 1 A A 3 1_555 A U 33 1_555 A C 4 1_555 A G 32 1_555 0.441 -1.558 3.906 -4.562 3.169 24.400 -4.682 -2.582 3.538 7.375 10.619 25.014 3 AA_A3C4:G32U33_AA A 3 ? A 33 ? A 4 ? A 32 ? 1 A C 4 1_555 A G 32 1_555 A C 5 1_555 A G 31 1_555 -0.925 -1.580 4.084 1.803 8.066 30.894 -4.596 2.067 3.512 14.812 -3.311 31.954 4 AA_C4C5:G31G32_AA A 4 ? A 32 ? A 5 ? A 31 ? 1 A U 12 1_555 A A 23 1_555 A G 13 1_555 A C 22 1_555 1.300 -0.517 3.538 -5.159 -17.729 25.895 2.654 -3.427 2.977 -34.527 10.048 31.712 5 AA_U12G13:C22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A G 13 1_555 A C 22 1_555 A C 14 1_555 A G 21 1_555 -0.334 -2.069 4.326 2.410 31.439 18.446 -7.613 0.864 0.426 60.240 -4.619 36.412 6 AA_G13C14:G21C22_AA A 13 ? A 22 ? A 14 ? A 21 ? 1 A C 14 1_555 A G 21 1_555 A A 15 1_555 A U 20 1_555 0.197 -1.202 3.214 -1.131 -14.276 15.672 3.408 -1.064 3.177 -42.526 3.370 21.199 7 AA_C14A15:U20G21_AA A 14 ? A 21 ? A 15 ? A 20 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 500 ? 2 UNITYPLUS Varian 600 ? 3 INOVA Varian 800 ? # _atom_sites.entry_id 2PCV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_