HEADER COMPLEX (SYNTROPHIN/PEPTIDE) 10-DEC-97 2PDZ TITLE SOLUTION STRUCTURE OF THE SYNTROPHIN PDZ DOMAIN IN COMPLEX WITH THE TITLE 2 PEPTIDE GVKESLV, NMR, 15 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTROPHIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE GVKESLV; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: 2-PEPTIDE FROM C-TERMINUS OF ALPHA-SUBUNIT OF VOLTAGE- COMPND 11 GATED SODIUM CHANNELS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: HEART; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PET; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: BL21; SOURCE 11 EXPRESSION_SYSTEM_ORGAN: HEART; SOURCE 12 EXPRESSION_SYSTEM_TISSUE: MUSCLE; SOURCE 13 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET 21D; SOURCE 16 MOL_ID: 2 KEYWDS SYNTROPHIN PDZ DOMAIN, VOLTAGE-GATED SODIUM CHANNEL, COMPLEX KEYWDS 2 (SYNTROPHIN-PEPTIDE), COMPLEX (SYNTROPHIN-PEPTIDE) COMPLEX EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.SCHULTZ,U.HOFFMUELLER,J.ASHURST,G.KRAUSE,P.SCHMIEDER,M.MACIAS, AUTHOR 2 J.SCHNEIDER-MERGENER,H.OSCHKINAT REVDAT 4 16-MAR-22 2PDZ 1 REMARK REVDAT 3 24-FEB-09 2PDZ 1 VERSN REVDAT 2 16-FEB-99 2PDZ 1 SOURCE COMPND REMARK TITLE REVDAT 2 2 1 JRNL KEYWDS HEADER REVDAT 1 30-DEC-98 2PDZ 0 JRNL AUTH J.SCHULTZ,U.HOFFMULLER,G.KRAUSE,J.ASHURST,M.J.MACIAS, JRNL AUTH 2 P.SCHMIEDER,J.SCHNEIDER-MERGENER,H.OSCHKINAT JRNL TITL SPECIFIC INTERACTIONS BETWEEN THE SYNTROPHIN PDZ DOMAIN AND JRNL TITL 2 VOLTAGE-GATED SODIUM CHANNELS. JRNL REF NAT.STRUCT.BIOL. V. 5 19 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9437424 JRNL DOI 10.1038/NSB0198-19 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PDZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178454. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 70MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-NOESY; 2D-TOCSY; 1H-15 NOESY REMARK 210 AND TOCSY; 1H-13C NOESY; HCCH- REMARK 210 TOCSY; HCCH-COSY; CBCANH; REMARK 210 CBCA(CO)NH; HNCA; HN(CO)CA; 1H- REMARK 210 13C HQQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX600; DRX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED SYNTROPHIN PDZ DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN A 55 O VAL A 79 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 8 -151.10 -61.46 REMARK 500 1 ALA A 9 -171.21 55.63 REMARK 500 1 ASP A 10 113.28 58.48 REMARK 500 1 ALA A 11 -62.02 67.26 REMARK 500 1 ILE A 16 118.17 -176.32 REMARK 500 1 ASN A 24 23.76 -140.53 REMARK 500 1 PRO A 27 54.34 -69.54 REMARK 500 1 ILE A 28 88.35 42.33 REMARK 500 1 ALA A 44 -47.75 -176.64 REMARK 500 1 LEU A 45 82.44 -67.93 REMARK 500 1 SER A 53 131.92 -175.76 REMARK 500 1 ASP A 58 97.88 -44.56 REMARK 500 1 LYS A 73 59.79 -112.74 REMARK 500 1 MET A 85 51.74 -115.47 REMARK 500 2 LYS A 8 155.92 -47.49 REMARK 500 2 ILE A 16 120.52 -176.33 REMARK 500 2 ASN A 24 25.75 -140.90 REMARK 500 2 LYS A 25 90.05 54.29 REMARK 500 2 MET A 26 127.01 -170.03 REMARK 500 2 PRO A 27 45.50 -75.88 REMARK 500 2 ILE A 28 90.77 47.51 REMARK 500 2 ALA A 44 -50.39 -175.15 REMARK 500 2 VAL A 47 165.78 -48.12 REMARK 500 2 SER A 53 103.90 176.96 REMARK 500 2 ASP A 58 101.17 -41.44 REMARK 500 2 LYS A 73 58.21 -119.43 REMARK 500 2 SER B 5 -161.72 -79.90 REMARK 500 2 LEU B 6 99.88 -171.14 REMARK 500 3 LYS A 8 -70.72 -67.61 REMARK 500 3 ALA A 9 -70.61 64.39 REMARK 500 3 ASP A 10 117.01 -163.17 REMARK 500 3 ALA A 11 126.09 -174.87 REMARK 500 3 ILE A 16 117.81 -176.42 REMARK 500 3 ILE A 28 88.58 43.37 REMARK 500 3 ALA A 44 -51.94 -165.62 REMARK 500 3 SER A 53 135.52 -178.68 REMARK 500 3 ASP A 58 101.32 -46.64 REMARK 500 3 THR A 74 -84.82 -57.81 REMARK 500 3 MET A 85 47.32 -101.21 REMARK 500 3 SER B 5 -175.69 -54.24 REMARK 500 4 ILE A 16 118.75 -176.78 REMARK 500 4 ILE A 28 89.44 43.53 REMARK 500 4 ALA A 44 -43.99 -169.11 REMARK 500 4 LEU A 45 80.10 -68.17 REMARK 500 4 SER A 53 99.55 176.08 REMARK 500 4 ASP A 58 103.96 -40.89 REMARK 500 4 MET A 85 54.89 -105.89 REMARK 500 4 SER B 5 -156.80 -73.59 REMARK 500 4 LEU B 6 89.25 -167.07 REMARK 500 5 ALA A 9 32.42 -98.37 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.30 SIDE CHAIN REMARK 500 1 ARG A 2 0.26 SIDE CHAIN REMARK 500 1 ARG A 3 0.25 SIDE CHAIN REMARK 500 1 ARG A 7 0.26 SIDE CHAIN REMARK 500 1 ARG A 22 0.26 SIDE CHAIN REMARK 500 2 ARG A 1 0.32 SIDE CHAIN REMARK 500 2 ARG A 2 0.30 SIDE CHAIN REMARK 500 2 ARG A 3 0.31 SIDE CHAIN REMARK 500 2 ARG A 7 0.27 SIDE CHAIN REMARK 500 2 ARG A 22 0.17 SIDE CHAIN REMARK 500 3 ARG A 1 0.22 SIDE CHAIN REMARK 500 3 ARG A 2 0.27 SIDE CHAIN REMARK 500 3 ARG A 3 0.32 SIDE CHAIN REMARK 500 3 ARG A 7 0.30 SIDE CHAIN REMARK 500 3 ARG A 22 0.31 SIDE CHAIN REMARK 500 4 ARG A 1 0.29 SIDE CHAIN REMARK 500 4 ARG A 2 0.28 SIDE CHAIN REMARK 500 4 ARG A 3 0.17 SIDE CHAIN REMARK 500 4 ARG A 7 0.29 SIDE CHAIN REMARK 500 4 ARG A 22 0.22 SIDE CHAIN REMARK 500 5 ARG A 1 0.30 SIDE CHAIN REMARK 500 5 ARG A 2 0.20 SIDE CHAIN REMARK 500 5 ARG A 3 0.21 SIDE CHAIN REMARK 500 5 ARG A 7 0.28 SIDE CHAIN REMARK 500 5 ARG A 22 0.31 SIDE CHAIN REMARK 500 6 ARG A 1 0.32 SIDE CHAIN REMARK 500 6 ARG A 2 0.28 SIDE CHAIN REMARK 500 6 ARG A 3 0.26 SIDE CHAIN REMARK 500 6 ARG A 7 0.30 SIDE CHAIN REMARK 500 6 ARG A 22 0.29 SIDE CHAIN REMARK 500 7 ARG A 1 0.21 SIDE CHAIN REMARK 500 7 ARG A 2 0.27 SIDE CHAIN REMARK 500 7 ARG A 3 0.31 SIDE CHAIN REMARK 500 7 ARG A 7 0.21 SIDE CHAIN REMARK 500 7 ARG A 22 0.17 SIDE CHAIN REMARK 500 8 ARG A 1 0.29 SIDE CHAIN REMARK 500 8 ARG A 2 0.21 SIDE CHAIN REMARK 500 8 ARG A 3 0.31 SIDE CHAIN REMARK 500 8 ARG A 7 0.25 SIDE CHAIN REMARK 500 8 ARG A 22 0.24 SIDE CHAIN REMARK 500 9 ARG A 1 0.23 SIDE CHAIN REMARK 500 9 ARG A 2 0.28 SIDE CHAIN REMARK 500 9 ARG A 3 0.24 SIDE CHAIN REMARK 500 9 ARG A 7 0.31 SIDE CHAIN REMARK 500 9 ARG A 22 0.29 SIDE CHAIN REMARK 500 10 ARG A 1 0.31 SIDE CHAIN REMARK 500 10 ARG A 2 0.16 SIDE CHAIN REMARK 500 10 ARG A 3 0.32 SIDE CHAIN REMARK 500 10 ARG A 7 0.24 SIDE CHAIN REMARK 500 10 ARG A 22 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 75 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2PDZ A 1 86 UNP Q61234 SNTA1_MOUSE 79 164 DBREF 2PDZ B 3 7 PDB 2PDZ 2PDZ 3 7 SEQRES 1 A 86 ARG ARG ARG VAL THR VAL ARG LYS ALA ASP ALA GLY GLY SEQRES 2 A 86 LEU GLY ILE SER ILE LYS GLY GLY ARG GLU ASN LYS MET SEQRES 3 A 86 PRO ILE LEU ILE SER LYS ILE PHE LYS GLY LEU ALA ALA SEQRES 4 A 86 ASP GLN THR GLU ALA LEU PHE VAL GLY ASP ALA ILE LEU SEQRES 5 A 86 SER VAL ASN GLY GLU ASP LEU SER SER ALA THR HIS ASP SEQRES 6 A 86 GLU ALA VAL GLN ALA LEU LYS LYS THR GLY LYS GLU VAL SEQRES 7 A 86 VAL LEU GLU VAL LYS TYR MET LYS SEQRES 1 B 5 LYS GLU SER LEU VAL HELIX 1 1 ALA A 38 THR A 42 1 5 HELIX 2 4 HIS A 64 LYS A 73 1 10 SHEET 1 A 3 ARG A 2 ARG A 7 0 SHEET 2 A 3 GLU A 77 TYR A 84 -1 N VAL A 82 O ARG A 2 SHEET 3 A 3 ASP A 49 VAL A 54 -1 N SER A 53 O GLU A 81 SHEET 1 B 2 SER A 17 LYS A 19 0 SHEET 2 B 2 LEU A 29 LYS A 32 -1 N LYS A 32 O SER A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1