HEADER CELL ADHESION 04-APR-07 2PF5 TITLE CRYSTAL STRUCTURE OF THE HUMAN TSG-6 LINK MODULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR-INDUCIBLE PROTEIN TSG-6; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: LINK_MODULE, RESIDUES 36-133 IN PREPROTEIN; COMPND 5 SYNONYM: TNF- STIMULATED GENE 6 PROTEIN; HYALURONATE-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFAIP6, TSG6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRK172; SOURCE 11 OTHER_DETAILS: SEE DAY ET AL. (1996) PROTEIN EXPRESSION & SOURCE 12 PURIFICATION 8, 1-16. KEYWDS LINK MODULE; HYALURONAN-BINDING DOMAIN; ALPHA/BETA DOMAIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR V.A.HIGMAN,D.J.MAHONEY,M.E.M.NOBLE,A.J.DAY REVDAT 6 30-OCT-24 2PF5 1 REMARK REVDAT 5 30-AUG-23 2PF5 1 REMARK REVDAT 4 24-FEB-09 2PF5 1 VERSN REVDAT 3 27-NOV-07 2PF5 1 REMARK REVDAT 2 20-NOV-07 2PF5 1 JRNL REVDAT 1 26-JUN-07 2PF5 0 JRNL AUTH V.A.HIGMAN,C.D.BLUNDELL,D.J.MAHONEY,C.REDFIELD,M.E.NOBLE, JRNL AUTH 2 A.J.DAY JRNL TITL PLASTICITY OF THE TSG-6 HA-BINDING LOOP AND MOBILITY IN THE JRNL TITL 2 TSG-6-HA COMPLEX REVEALED BY NMR AND X-RAY CRYSTALLOGRAPHY JRNL REF J.MOL.BIOL. V. 371 669 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17585936 JRNL DOI 10.1016/J.JMB.2007.05.073 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 65938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3499 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4054 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5412 ; 1.660 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ;14.882 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;25.670 ;20.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 648 ;14.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;17.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3016 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1909 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2604 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 119 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2365 ; 0.874 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3621 ; 1.273 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 2.086 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1771 ; 2.874 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 62 4 REMARK 3 1 B 1 B 62 4 REMARK 3 1 C 1 C 62 4 REMARK 3 1 D 1 D 62 4 REMARK 3 1 E 1 E 61 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 411 ; 0.30 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 411 ; 0.24 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 411 ; 0.43 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 411 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 411 ; 0.40 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 411 ; 1.08 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 411 ; 0.94 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 411 ; 0.88 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 411 ; 0.76 ; 2.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 411 ; 1.42 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 74 A 95 4 REMARK 3 1 B 74 B 95 4 REMARK 3 1 C 74 C 95 4 REMARK 3 1 D 74 D 95 4 REMARK 3 1 E 74 E 95 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 164 ; 0.31 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 164 ; 0.29 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 C (A): 164 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 D (A): 164 ; 0.21 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 E (A): 164 ; 0.38 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 164 ; 0.92 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 164 ; 0.71 ; 2.00 REMARK 3 MEDIUM THERMAL 2 C (A**2): 164 ; 0.79 ; 2.00 REMARK 3 MEDIUM THERMAL 2 D (A**2): 164 ; 0.88 ; 2.00 REMARK 3 MEDIUM THERMAL 2 E (A**2): 164 ; 0.99 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 88.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.080 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.98 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: 1UUH - CRYSTAL STRUCTURE OF CD44 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A 2.5 UL DROP FORMED FROM EQUAL REMARK 280 AMOUNTS OF PROTEIN SOLUTION (7 MG/ML SOLUTION IN APPROXIMATELY REMARK 280 25MM TRISHCL AND 75MM NACL) AND WELL SOLUTION WAS EQUILIBRATED REMARK 280 AGAINST 1 ML WELL SOLUTION (2 M AMMONIUM SULPHATE, 2 % V/V PEG REMARK 280 400 AND 0.1M SODIUM HEPES (PH 7.5)), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.40800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.40800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 65 REMARK 465 PRO A 66 REMARK 465 ASN A 67 REMARK 465 CYS A 68 REMARK 465 GLY A 69 REMARK 465 PHE A 70 REMARK 465 GLY A 71 REMARK 465 HIS A 96 REMARK 465 ALA A 97 REMARK 465 LYS A 98 REMARK 465 LYS B 63 REMARK 465 PRO B 64 REMARK 465 ALA B 97 REMARK 465 LYS B 98 REMARK 465 PRO C 64 REMARK 465 GLY C 65 REMARK 465 PRO C 66 REMARK 465 ALA C 97 REMARK 465 LYS C 98 REMARK 465 ALA D 97 REMARK 465 LYS D 98 REMARK 465 VAL E 62 REMARK 465 LYS E 63 REMARK 465 PRO E 64 REMARK 465 GLY E 65 REMARK 465 PRO E 66 REMARK 465 ASN E 67 REMARK 465 CYS E 68 REMARK 465 GLY E 69 REMARK 465 PHE E 70 REMARK 465 GLY E 71 REMARK 465 LYS E 72 REMARK 465 THR E 73 REMARK 465 LYS E 98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O10 2PE B 1003 O HOH B 9080 2.06 REMARK 500 N ARG C 8 O HOH C 103 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O25 2PE B 1004 O HOH C 103 4445 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -159.01 -92.63 REMARK 500 CYS C 68 4.43 81.22 REMARK 500 ASP C 89 -159.45 -92.87 REMARK 500 CYS D 68 137.42 170.46 REMARK 500 ASP D 89 -154.64 -92.18 REMARK 500 TYR E 12 60.80 61.35 REMARK 500 PHE E 44 99.18 -43.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS C 68 GLY C 69 -43.76 REMARK 500 PHE C 70 GLY C 71 30.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE D 1005 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE D 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE D 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE E 1001 DBREF 2PF5 A 1 98 UNP P98066 TSG6_HUMAN 36 133 DBREF 2PF5 B 1 98 UNP P98066 TSG6_HUMAN 36 133 DBREF 2PF5 C 1 98 UNP P98066 TSG6_HUMAN 36 133 DBREF 2PF5 D 1 98 UNP P98066 TSG6_HUMAN 36 133 DBREF 2PF5 E 1 98 UNP P98066 TSG6_HUMAN 36 133 SEQRES 1 A 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 A 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 A 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 A 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 A 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 A 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 A 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 A 98 CYS TYR ASN PRO HIS ALA LYS SEQRES 1 B 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 B 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 B 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 B 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 B 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 B 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 B 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 B 98 CYS TYR ASN PRO HIS ALA LYS SEQRES 1 C 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 C 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 C 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 C 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 C 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 C 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 C 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 C 98 CYS TYR ASN PRO HIS ALA LYS SEQRES 1 D 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 D 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 D 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 D 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 D 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 D 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 D 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 D 98 CYS TYR ASN PRO HIS ALA LYS SEQRES 1 E 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 E 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 E 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 E 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 E 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 E 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 E 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 E 98 CYS TYR ASN PRO HIS ALA LYS HET SO4 B9002 5 HET 2PE B1003 56 HET 2PE B1004 28 HET 2PE D1002 56 HET 2PE D1005 13 HET SO4 E9001 5 HET 2PE E1001 28 HETNAM SO4 SULFATE ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 6 SO4 2(O4 S 2-) FORMUL 7 2PE 5(C18 H38 O10) FORMUL 13 HOH *414(H2 O) HELIX 1 1 THR A 15 GLU A 26 1 12 HELIX 2 2 THR A 32 ILE A 42 1 11 HELIX 3 3 THR B 15 GLU B 26 1 12 HELIX 4 4 THR B 32 ILE B 42 1 11 HELIX 5 5 THR C 15 GLU C 26 1 12 HELIX 6 6 THR C 32 ILE C 42 1 11 HELIX 7 7 THR D 15 GLU D 26 1 12 HELIX 8 8 THR D 32 ILE D 42 1 11 HELIX 9 9 CYS D 68 LYS D 72 5 5 HELIX 10 10 THR E 15 GLU E 26 1 12 HELIX 11 11 THR E 32 LYS E 41 1 10 SHEET 1 A 3 VAL A 2 ARG A 5 0 SHEET 2 A 3 ASP A 89 TYR A 93 -1 O CYS A 92 N TYR A 3 SHEET 3 A 3 HIS A 29 LEU A 30 -1 N HIS A 29 O TYR A 93 SHEET 1 B 5 VAL A 2 ARG A 5 0 SHEET 2 B 5 ASP A 89 TYR A 93 -1 O CYS A 92 N TYR A 3 SHEET 3 B 5 GLY A 50 TRP A 51 1 N TRP A 51 O ASP A 89 SHEET 4 B 5 ARG A 56 ILE A 61 -1 O GLY A 58 N GLY A 50 SHEET 5 B 5 GLY A 74 ILE A 80 -1 O TYR A 78 N VAL A 57 SHEET 1 C 3 VAL B 2 ARG B 5 0 SHEET 2 C 3 ASP B 89 TYR B 93 -1 O ALA B 90 N ARG B 5 SHEET 3 C 3 HIS B 29 LEU B 30 -1 N HIS B 29 O TYR B 93 SHEET 1 D 5 VAL B 2 ARG B 5 0 SHEET 2 D 5 ASP B 89 TYR B 93 -1 O ALA B 90 N ARG B 5 SHEET 3 D 5 GLY B 50 TRP B 51 1 N TRP B 51 O ASP B 89 SHEET 4 D 5 ARG B 56 PRO B 60 -1 O GLY B 58 N GLY B 50 SHEET 5 D 5 ILE B 75 ILE B 80 -1 O ILE B 76 N TYR B 59 SHEET 1 E 3 VAL C 2 ARG C 5 0 SHEET 2 E 3 ASP C 89 TYR C 93 -1 O CYS C 92 N TYR C 3 SHEET 3 E 3 HIS C 29 LEU C 30 -1 N HIS C 29 O TYR C 93 SHEET 1 F 5 VAL C 2 ARG C 5 0 SHEET 2 F 5 ASP C 89 TYR C 93 -1 O CYS C 92 N TYR C 3 SHEET 3 F 5 GLY C 50 TRP C 51 1 N TRP C 51 O ASP C 89 SHEET 4 F 5 ARG C 56 ILE C 61 -1 O GLY C 58 N GLY C 50 SHEET 5 F 5 GLY C 74 ILE C 80 -1 O ILE C 76 N TYR C 59 SHEET 1 G 3 VAL D 2 ARG D 5 0 SHEET 2 G 3 ASP D 89 TYR D 93 -1 O CYS D 92 N TYR D 3 SHEET 3 G 3 HIS D 29 LEU D 30 -1 N HIS D 29 O TYR D 93 SHEET 1 H 5 VAL D 2 ARG D 5 0 SHEET 2 H 5 ASP D 89 TYR D 93 -1 O CYS D 92 N TYR D 3 SHEET 3 H 5 GLY D 50 TRP D 51 1 N TRP D 51 O ASP D 89 SHEET 4 H 5 ARG D 56 ILE D 61 -1 O GLY D 58 N GLY D 50 SHEET 5 H 5 GLY D 74 ILE D 80 -1 O ILE D 76 N TYR D 59 SHEET 1 I 3 VAL E 2 ARG E 5 0 SHEET 2 I 3 ASP E 89 TYR E 93 -1 O ALA E 90 N ARG E 5 SHEET 3 I 3 HIS E 29 LEU E 30 -1 N HIS E 29 O TYR E 93 SHEET 1 J 5 VAL E 2 ARG E 5 0 SHEET 2 J 5 ASP E 89 TYR E 93 -1 O ALA E 90 N ARG E 5 SHEET 3 J 5 GLY E 50 TRP E 51 1 N TRP E 51 O ASP E 89 SHEET 4 J 5 ARG E 56 TYR E 59 -1 O GLY E 58 N GLY E 50 SHEET 5 J 5 ILE E 76 ILE E 80 -1 O TYR E 78 N VAL E 57 SSBOND 1 CYS A 23 CYS A 92 1555 1555 2.05 SSBOND 2 CYS B 23 CYS B 92 1555 1555 2.04 SSBOND 3 CYS B 47 CYS B 68 1555 1555 2.01 SSBOND 4 CYS C 23 CYS C 92 1555 1555 2.06 SSBOND 5 CYS C 47 CYS C 68 1555 1555 2.05 SSBOND 6 CYS D 23 CYS D 92 1555 1555 2.04 SSBOND 7 CYS D 47 CYS D 68 1555 1555 2.05 SSBOND 8 CYS E 23 CYS E 92 1555 1555 2.06 SITE 1 AC1 4 ARG B 40 LYS B 41 HOH B9020 HOH B9044 SITE 1 AC2 4 ARG A 8 TYR E 12 ARG E 87 HOH E9034 SITE 1 AC3 17 TYR B 12 TYR B 78 ARG B 81 ASN B 83 SITE 2 AC3 17 SER B 85 GLU B 86 ARG B 87 TRP B 88 SITE 3 AC3 17 HOH B9072 HOH B9078 HOH B9080 PHE D 70 SITE 4 AC3 17 TYR D 78 ARG E 5 ARG E 8 VAL E 22 SITE 5 AC3 17 PHE E 25 SITE 1 AC4 12 ALA B 7 ARG B 8 SER B 9 LYS B 13 SITE 2 AC4 12 GLU B 18 VAL B 22 PHE B 25 ARG C 8 SITE 3 AC4 12 SER C 9 VAL C 22 PHE C 25 HOH C 103 SITE 1 AC5 16 TYR B 33 TYR D 12 LEU D 82 ASN D 83 SITE 2 AC5 16 SER D 85 GLU D 86 ARG D 87 TRP D 88 SITE 3 AC5 16 HOH D1021 HOH D1025 HOH D1056 HOH D1074 SITE 4 AC5 16 HOH D1108 GLU E 24 PHE E 25 GLY E 27 SITE 1 AC6 8 ALA D 7 ARG D 8 SER D 9 LYS D 13 SITE 2 AC6 8 GLU D 18 VAL D 22 PHE D 25 GLU D 26 SITE 1 AC7 13 ARG A 5 GLU A 6 ARG A 8 ALA A 21 SITE 2 AC7 13 PHE A 25 ASP C 77 LYS E 11 TYR E 12 SITE 3 AC7 13 CYS E 47 TYR E 59 TYR E 78 ARG E 81 SITE 4 AC7 13 HOH E9056 CRYST1 134.816 75.870 90.674 90.00 103.42 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007418 0.000000 0.001770 0.00000 SCALE2 0.000000 0.013180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011338 0.00000