HEADER    TRANSPORT PROTEIN                       16-APR-07   2PJH              
TITLE     STRCTURAL MODEL OF THE P97 N DOMAIN- NPL4 UBD COMPLEX                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NUCLEAR PROTEIN LOCALIZATION PROTEIN 4 HOMOLOG;            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: N DOMAIN (RESIDUES 1-80);                                  
COMPND   5 SYNONYM: PROTEIN NPL4;                                               
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE;                 
COMPND   9 CHAIN: B;                                                            
COMPND  10 FRAGMENT: UBD (RESIDUES 21-213);                                     
COMPND  11 SYNONYM: TER ATPASE, 15S MG2+, - ATPASE P97 SUBUNIT, VALOSIN-        
COMPND  12 CONTAINING PROTEIN, VCP;                                             
COMPND  13 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 GENE: P97;                                                           
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE  11 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE  12 ORGANISM_TAXID: 10090;                                               
SOURCE  13 GENE: NPL4;                                                          
SOURCE  14 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  15 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    P97, UFD1, NPL4, AAA, ATPASE, PROTEIN BINDING, TRANSPORT PROTEIN      
EXPDTA    SOLUTION NMR                                                          
AUTHOR    R.ISAACSON,V.E.PYE,S.SIMPSON,H.H.MEYER,X.ZHANG,P.FREEMONT             
REVDAT   5   22-MAY-24 2PJH    1       REMARK                                   
REVDAT   4   16-MAR-22 2PJH    1       REMARK                                   
REVDAT   3   24-FEB-09 2PJH    1       VERSN                                    
REVDAT   2   30-OCT-07 2PJH    1       JRNL                                     
REVDAT   1   08-MAY-07 2PJH    0                                                
JRNL        AUTH   R.L.ISAACSON,V.E.PYE,P.SIMPSON,H.H.MEYER,X.ZHANG,            
JRNL        AUTH 2 P.S.FREEMONT,S.MATTHEWS                                      
JRNL        TITL   DETAILED STRUCTURAL INSIGHTS INTO THE P97-NPL4-UFD1          
JRNL        TITL 2 INTERFACE.                                                   
JRNL        REF    J.BIOL.CHEM.                  V. 282 21361 2007              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   17491009                                                     
JRNL        DOI    10.1074/JBC.M610069200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : HADDOCK 1.3, HADDOCK 1.3                             
REMARK   3   AUTHORS     : BONVIN (HADDOCK), BONVIN (HADDOCK)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: CHEMICAL SHIFT BASED DOCKING              
REMARK   4                                                                      
REMARK   4 2PJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000042444.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 7.5                                
REMARK 210  IONIC STRENGTH                 : 125MM NACL                         
REMARK 210  PRESSURE                       : ATOMOSPHERIC ATM                   
REMARK 210  SAMPLE CONTENTS                : 15N LABELLED P97 N DOMAIN IN       
REMARK 210                                   COMPLEX WITH NPL4 UBD; 15N         
REMARK 210                                   LABELLED NPL4 UBD IN COMPLEX       
REMARK 210                                   WITH P97 N DOMAIN                  
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : NULL                               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : HADDOCK -                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : NULL                               
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : NULL                               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: DATA WAS NOT AVAILABLE TO CORRECT THE LARGE RMS DEVIATIONS   
REMARK 210  IN SER B 73                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465     RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     PHE A    78                                                      
REMARK 465     PRO A    79                                                      
REMARK 465     SER A    80                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500  HE21  GLN A    10     HH   TYR B   110              1.04            
REMARK 500   OE1  GLU B    30    HH22  ARG B    89              1.57            
REMARK 500   OE1  GLU B    66    HH12  ARG B   147              1.58            
REMARK 500   HZ2  LYS A    52     OD1  ASP B   179              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    SER B  73   CB    SER B  73   OG      0.600                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A  73   CB  -  CG  -  OD1 ANGL. DEV. = -17.3 DEGREES          
REMARK 500    ASP A  73   CB  -  CG  -  OD2 ANGL. DEV. = -49.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A  50     -151.97    -81.57                                   
REMARK 500    THR A  57      -46.10     70.73                                   
REMARK 500    LEU A  64     -151.79    -84.55                                   
REMARK 500    LYS A  68       91.34     63.93                                   
REMARK 500    ARG B  22       99.16     70.30                                   
REMARK 500    GLN B  50       64.35     60.59                                   
REMARK 500    PHE B  52     -146.77    -93.16                                   
REMARK 500    ARG B  53      -87.33    -82.48                                   
REMARK 500    ARG B 113      128.07   -170.73                                   
REMARK 500    LEU B 135       48.57    -79.28                                   
REMARK 500    LYS B 136      -57.25   -157.08                                   
REMARK 500    MET B 158      -64.97     71.62                                   
REMARK 500    CYS B 209       97.01    -69.16                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ASP A  73         0.24    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2PJH A    1    80  UNP    P60670   NPL4_MOUSE       1     80             
DBREF  2PJH B   21   213  UNP    Q01853   TERA_MOUSE      21    213             
SEQRES   1 A   80  MET ALA GLU SER ILE ILE ILE ARG VAL GLN SER PRO ASP          
SEQRES   2 A   80  GLY VAL LYS ARG ILE THR ALA THR LYS ARG GLU THR ALA          
SEQRES   3 A   80  ALA THR PHE LEU LYS LYS VAL ALA LYS GLU PHE GLY PHE          
SEQRES   4 A   80  GLN ASN ASN GLY PHE SER VAL TYR ILE ASN ARG ASN LYS          
SEQRES   5 A   80  THR GLY GLU ILE THR ALA SER SER SER LYS SER LEU HIS          
SEQRES   6 A   80  LEU LEU LYS ILE LYS HIS GLY ASP LEU LEU PHE LEU PHE          
SEQRES   7 A   80  PRO SER                                                      
SEQRES   1 B  193  ASN ARG PRO ASN ARG LEU ILE VAL ASP GLU ALA ILE ASN          
SEQRES   2 B  193  GLU ASP ASN SER VAL VAL SER LEU SER GLN PRO LYS MET          
SEQRES   3 B  193  ASP GLU LEU GLN LEU PHE ARG GLY ASP THR VAL LEU LEU          
SEQRES   4 B  193  LYS GLY LYS LYS ARG ARG GLU ALA VAL CYS ILE VAL LEU          
SEQRES   5 B  193  SER ASP ASP THR CYS SER ASP GLU LYS ILE ARG MET ASN          
SEQRES   6 B  193  ARG VAL VAL ARG ASN ASN LEU ARG VAL ARG LEU GLY ASP          
SEQRES   7 B  193  VAL ILE SER ILE GLN PRO CYS PRO ASP VAL LYS TYR GLY          
SEQRES   8 B  193  LYS ARG ILE HIS VAL LEU PRO ILE ASP ASP THR VAL GLU          
SEQRES   9 B  193  GLY ILE THR GLY ASN LEU PHE GLU VAL TYR LEU LYS PRO          
SEQRES  10 B  193  TYR PHE LEU GLU ALA TYR ARG PRO ILE ARG LYS GLY ASP          
SEQRES  11 B  193  ILE PHE LEU VAL ARG GLY GLY MET ARG ALA VAL GLU PHE          
SEQRES  12 B  193  LYS VAL VAL GLU THR ASP PRO SER PRO TYR CYS ILE VAL          
SEQRES  13 B  193  ALA PRO ASP THR VAL ILE HIS CYS GLU GLY GLU PRO ILE          
SEQRES  14 B  193  LYS ARG GLU ASP GLU GLU GLU SER LEU ASN GLU VAL GLY          
SEQRES  15 B  193  TYR ASP ASP VAL GLY GLY CYS ARG LYS GLN LEU                  
HELIX    1   1 THR A   25  PHE A   37  1                                  13    
HELIX    2   2 ASN A   51  ILE A   56  5                                   6    
HELIX    3   3 SER B   42  LEU B   49  1                                   8    
HELIX    4   4 ASN B   85  LEU B   92  1                                   8    
HELIX    5   5 ASP B  120  VAL B  123  5                                   4    
HELIX    6   6 GLY B  202  VAL B  206  5                                   5    
SHEET    1   A 4 LEU A  75  PHE A  76  0                                        
SHEET    2   A 4 ARG A   8  GLN A  10  1  N  GLN A  10   O  LEU A  75           
SHEET    3   A 4 GLY A  14  ARG A  17 -1  O  LYS A  16   N  VAL A   9           
SHEET    4   A 4 VAL B 108  LYS B 109 -1  O  VAL B 108   N  VAL A  15           
SHEET    1   B 7 ARG B  25  ASP B  29  0                                        
SHEET    2   B 7 LYS B  81  MET B  84  1  O  ILE B  82   N  ASP B  29           
SHEET    3   B 7 VAL B  38  LEU B  41 -1  N  SER B  40   O  ARG B  83           
SHEET    4   B 7 GLU B  66  SER B  73  1  O  ILE B  70   N  VAL B  39           
SHEET    5   B 7 THR B  56  LYS B  60 -1  N  LEU B  59   O  ALA B  67           
SHEET    6   B 7 VAL B  99  PRO B 104 -1  O  SER B 101   N  LYS B  60           
SHEET    7   B 7 ARG B  25  ASP B  29 -1  N  LEU B  26   O  ILE B 100           
SHEET    1   C 4 ILE B 151  VAL B 154  0                                        
SHEET    2   C 4 VAL B 161  THR B 168 -1  O  VAL B 161   N  VAL B 154           
SHEET    3   C 4 ILE B 114  PRO B 118 -1  N  HIS B 115   O  GLU B 167           
SHEET    4   C 4 ILE B 182  HIS B 183  1  O  HIS B 183   N  ILE B 114           
SHEET    1   D 2 PRO B 145  ARG B 147  0                                        
SHEET    2   D 2 TYR B 173  ILE B 175 -1  O  CYS B 174   N  ILE B 146           
CISPEP   1 SER B  171    PRO B  172          0        -0.29                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000