HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-APR-07 2PJS TITLE CRYSTAL STRUCTURE OF ATU1953, PROTEIN OF UNKNOWN FUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ATU1953; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGR_C_3564P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: ATU1953, AGR_C_3564; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET DERIVATIVE KEYWDS AGROBACTERIUM TUMEFACIENS, GLYOXALASE/BLEOMYCIN RESISTANCE KEYWDS 2 PROTEIN/DIOXYGENASE SUPERFAMILY, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 13-JUL-11 2PJS 1 VERSN REVDAT 4 19-MAY-09 2PJS 1 REMARK REVDAT 3 24-FEB-09 2PJS 1 VERSN REVDAT 2 14-AUG-07 2PJS 1 AUTHOR REVDAT 1 15-MAY-07 2PJS 0 JRNL JRNL AUTH C.CHANG,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO,A.M.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF GLYOXALASE/BLEOMYCIN RESISTANCE JRNL TITL 2 PROTEIN/DIOXYGENASE SUPERFAMILY PROTEIN ATU1953, PROTEIN OF JRNL TITL 3 UNKNOWN FUNCTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.58000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1779 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2429 ; 1.579 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 8.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;35.616 ;23.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 261 ;13.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1388 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 781 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1212 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1163 ; 1.251 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1823 ; 1.574 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 694 ; 2.538 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 606 ; 3.905 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3140 29.0670 41.2240 REMARK 3 T TENSOR REMARK 3 T11: -0.1614 T22: -0.0527 REMARK 3 T33: 0.0263 T12: 0.0065 REMARK 3 T13: 0.0275 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.5394 L22: 1.6999 REMARK 3 L33: 2.3878 L12: 0.2192 REMARK 3 L13: 0.3320 L23: 0.1725 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0349 S13: -0.0062 REMARK 3 S21: -0.0339 S22: 0.0264 S23: -0.2204 REMARK 3 S31: 0.0576 S32: 0.1566 S33: -0.0266 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1670 24.5260 55.5760 REMARK 3 T TENSOR REMARK 3 T11: -0.1896 T22: -0.1302 REMARK 3 T33: -0.0496 T12: 0.0065 REMARK 3 T13: 0.0117 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7120 L22: 2.8906 REMARK 3 L33: 1.8144 L12: 0.2752 REMARK 3 L13: 0.1645 L23: -0.2988 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.0303 S13: -0.0389 REMARK 3 S21: 0.1306 S22: 0.0360 S23: -0.0346 REMARK 3 S31: 0.0082 S32: 0.1285 S33: -0.0669 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8110 33.5400 26.5130 REMARK 3 T TENSOR REMARK 3 T11: -0.1583 T22: -0.1382 REMARK 3 T33: -0.0559 T12: -0.0186 REMARK 3 T13: 0.0309 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.8066 L22: 2.8790 REMARK 3 L33: 6.0801 L12: -0.2545 REMARK 3 L13: -0.2927 L23: -0.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.0344 S13: 0.0313 REMARK 3 S21: -0.2579 S22: -0.0116 S23: -0.1666 REMARK 3 S31: -0.4090 S32: 0.3373 S33: -0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB042454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97941, 0.97154 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16839 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NA ACETATE, 50MM CD SULFATE, 0.21M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.74250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 116 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 HIS B 115 REMARK 465 ALA B 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 115 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 44 CG CD1 CD2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 ASP B 70 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 158 O HOH A 170 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 43 O HOH A 170 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 45 99.23 175.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 44 GLU A 45 -77.00 REMARK 500 HIS B 34 GLY B 35 -37.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 117 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 157 O REMARK 620 2 HOH A 132 O 93.8 REMARK 620 3 HOH A 158 O 97.0 84.3 REMARK 620 4 HIS B 47 NE2 86.9 170.6 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 117 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6054 RELATED DB: TARGETDB DBREF 2PJS A 1 116 UNP Q8UE11 Q8UE11_AGRT5 1 116 DBREF 2PJS B 1 116 UNP Q8UE11 Q8UE11_AGRT5 1 116 SEQADV 2PJS GLN A -2 UNP Q8UE11 CLONING ARTIFACT SEQADV 2PJS GLY A -1 UNP Q8UE11 CLONING ARTIFACT SEQADV 2PJS HIS A 0 UNP Q8UE11 CLONING ARTIFACT SEQADV 2PJS GLN B -2 UNP Q8UE11 CLONING ARTIFACT SEQADV 2PJS GLY B -1 UNP Q8UE11 CLONING ARTIFACT SEQADV 2PJS HIS B 0 UNP Q8UE11 CLONING ARTIFACT SEQRES 1 A 119 GLN GLY HIS MSE ALA VAL ARG ARG VAL VAL ALA ASN ILE SEQRES 2 A 119 ALA THR PRO GLU PRO ALA ARG ALA GLN ALA PHE TYR GLY SEQRES 3 A 119 ASP ILE LEU GLY MSE PRO VAL ALA MSE ASP HIS GLY TRP SEQRES 4 A 119 ILE VAL THR HIS ALA SER PRO LEU GLU ALA HIS ALA GLN SEQRES 5 A 119 VAL SER PHE ALA ARG GLU GLY GLY SER GLY THR ASP VAL SEQRES 6 A 119 PRO ASP LEU SER ILE GLU VAL ASP ASN PHE ASP GLU VAL SEQRES 7 A 119 HIS ALA ARG ILE LEU LYS ALA GLY LEU PRO ILE GLU TYR SEQRES 8 A 119 GLY PRO VAL THR GLU ALA TRP GLY VAL GLN ARG LEU PHE SEQRES 9 A 119 LEU ARG ASP PRO PHE GLY LYS LEU ILE ASN ILE LEU SER SEQRES 10 A 119 HIS ALA SEQRES 1 B 119 GLN GLY HIS MSE ALA VAL ARG ARG VAL VAL ALA ASN ILE SEQRES 2 B 119 ALA THR PRO GLU PRO ALA ARG ALA GLN ALA PHE TYR GLY SEQRES 3 B 119 ASP ILE LEU GLY MSE PRO VAL ALA MSE ASP HIS GLY TRP SEQRES 4 B 119 ILE VAL THR HIS ALA SER PRO LEU GLU ALA HIS ALA GLN SEQRES 5 B 119 VAL SER PHE ALA ARG GLU GLY GLY SER GLY THR ASP VAL SEQRES 6 B 119 PRO ASP LEU SER ILE GLU VAL ASP ASN PHE ASP GLU VAL SEQRES 7 B 119 HIS ALA ARG ILE LEU LYS ALA GLY LEU PRO ILE GLU TYR SEQRES 8 B 119 GLY PRO VAL THR GLU ALA TRP GLY VAL GLN ARG LEU PHE SEQRES 9 B 119 LEU ARG ASP PRO PHE GLY LYS LEU ILE ASN ILE LEU SER SEQRES 10 B 119 HIS ALA MODRES 2PJS MSE A 28 MET SELENOMETHIONINE MODRES 2PJS MSE A 32 MET SELENOMETHIONINE MODRES 2PJS MSE B 28 MET SELENOMETHIONINE MODRES 2PJS MSE B 32 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 32 8 HET MSE B 28 8 HET MSE B 32 8 HET ZN B 117 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *104(H2 O) HELIX 1 1 GLU A 14 ARG A 17 5 4 HELIX 2 2 ALA A 18 GLY A 23 1 6 HELIX 3 3 ASN A 71 ALA A 82 1 12 HELIX 4 4 GLU B 14 ARG B 17 5 4 HELIX 5 5 ALA B 18 GLY B 23 1 6 HELIX 6 6 ASN B 71 ALA B 82 1 12 SHEET 1 A 4 VAL A 30 ASP A 33 0 SHEET 2 A 4 ILE A 37 ALA A 53 -1 O THR A 39 N ALA A 31 SHEET 3 A 4 ILE B 37 ALA B 53 -1 O ALA B 46 N ALA A 46 SHEET 4 A 4 VAL B 30 ASP B 33 -1 N ALA B 31 O THR B 39 SHEET 1 B12 TYR A 88 THR A 92 0 SHEET 2 B12 GLN A 98 ARG A 103 -1 O ARG A 99 N VAL A 91 SHEET 3 B12 LEU A 109 SER A 114 -1 O ILE A 110 N LEU A 102 SHEET 4 B12 LEU A 65 VAL A 69 1 N ILE A 67 O ASN A 111 SHEET 5 B12 VAL B 3 ALA B 11 -1 O ARG B 4 N GLU A 68 SHEET 6 B12 ILE A 37 ALA A 53 1 N SER A 51 O ILE B 10 SHEET 7 B12 ILE B 37 ALA B 53 -1 O ALA B 46 N ALA A 46 SHEET 8 B12 VAL A 3 ALA A 11 1 N ILE A 10 O SER B 51 SHEET 9 B12 LEU B 65 VAL B 69 -1 O GLU B 68 N ARG A 4 SHEET 10 B12 LEU B 109 SER B 114 1 O ASN B 111 N ILE B 67 SHEET 11 B12 GLN B 98 ARG B 103 -1 N LEU B 102 O ILE B 110 SHEET 12 B12 ILE B 86 THR B 92 -1 N TYR B 88 O PHE B 101 LINK ZN ZN B 117 O HOH A 157 1555 1555 2.24 LINK ZN ZN B 117 O HOH A 132 1555 1555 2.20 LINK ZN ZN B 117 O HOH A 158 1555 1555 2.18 LINK C GLY A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N PRO A 29 1555 1555 1.34 LINK C ALA A 31 N MSE A 32 1555 1555 1.32 LINK C MSE A 32 N ASP A 33 1555 1555 1.33 LINK C GLY B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N PRO B 29 1555 1555 1.35 LINK C ALA B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N ASP B 33 1555 1555 1.33 LINK ZN ZN B 117 NE2 HIS B 47 1555 1455 2.34 CISPEP 1 GLY A 89 PRO A 90 0 1.24 CISPEP 2 GLY B 89 PRO B 90 0 2.71 SITE 1 AC1 6 GLU A 45 HOH A 132 HOH A 157 HOH A 158 SITE 2 AC1 6 HOH A 170 HIS B 47 CRYST1 29.847 61.485 54.383 90.00 92.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033504 0.000000 0.001504 0.00000 SCALE2 0.000000 0.016264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018407 0.00000