HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-APR-07 2PKT TITLE CRYSTAL STRUCTURE OF THE HUMAN CLP-36 (PDLIM1) BOUND TO THE C-TERMINAL TITLE 2 PEPTIDE OF HUMAN ALPHA-ACTININ-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ AND LIM DOMAIN PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ELFIN, LIM DOMAIN PROTEIN CLP-36, C-TERMINAL LIM DOMAIN COMPND 5 PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: HEART; SOURCE 6 GENE: PDLIM1, CLIM1, CLP36; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PDZ DOMAIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.UPPENBERG,C.GILEADI,J.ELKINS,J.BRAY,N.BURGESS-BROWN,E.SALAH, AUTHOR 2 O.GILEADI,G.BUNKOCZI,E.UGOCHUKWU,C.UMEANO,F.VON DELFT,J.WEIGELT, AUTHOR 3 C.H.ARROWSMITH,A.EDWARDS,M.SUNDSTROM,D.A.DOYLE,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 7 03-APR-24 2PKT 1 REMARK REVDAT 6 21-FEB-24 2PKT 1 REMARK REVDAT 5 23-JUN-21 2PKT 1 JRNL REMARK SEQADV LINK REVDAT 4 18-OCT-17 2PKT 1 REMARK REVDAT 3 13-JUL-11 2PKT 1 VERSN REVDAT 2 24-FEB-09 2PKT 1 VERSN REVDAT 1 08-MAY-07 2PKT 0 JRNL AUTH J.M.ELKINS,C.GILEADI,L.SHRESTHA,C.PHILLIPS,J.WANG,J.R.MUNIZ, JRNL AUTH 2 D.A.DOYLE JRNL TITL UNUSUAL BINDING INTERACTIONS IN PDZ DOMAIN CRYSTAL JRNL TITL 2 STRUCTURES HELP EXPLAIN BINDING MECHANISMS JRNL REF PROTEIN SCI. V. 19 731 2010 JRNL REFN ESSN 1469-896X JRNL PMID 20120020 JRNL DOI 10.1002/PRO.349 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 18632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 712 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 477 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 959 ; 0.919 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1177 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 92 ; 5.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ;36.057 ;25.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 118 ; 9.282 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 9.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 112 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 785 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 122 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 105 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 489 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 337 ; 0.151 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 404 ; 0.074 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 55 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.104 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.073 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 5 ; 0.054 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 476 ; 0.236 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 187 ; 0.048 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 733 ; 0.390 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 267 ; 0.696 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 225 ; 1.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5156 -15.3015 9.8475 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.1151 REMARK 3 T33: 0.2177 T12: 0.0650 REMARK 3 T13: 0.0381 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.7190 L22: 84.0145 REMARK 3 L33: 11.5033 L12: 13.9864 REMARK 3 L13: 5.3571 L23: 24.1746 REMARK 3 S TENSOR REMARK 3 S11: 0.2156 S12: -0.0925 S13: -0.5429 REMARK 3 S21: -0.4198 S22: 0.0242 S23: -1.6411 REMARK 3 S31: 0.2860 S32: 0.5124 S33: -0.2398 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3454 -9.4514 8.2653 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0313 REMARK 3 T33: 0.0657 T12: 0.0005 REMARK 3 T13: -0.0087 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.9735 L22: 1.7150 REMARK 3 L33: 1.8667 L12: 0.4735 REMARK 3 L13: 0.1366 L23: -0.3223 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: -0.1664 S13: -0.0104 REMARK 3 S21: 0.1473 S22: -0.1096 S23: -0.0078 REMARK 3 S31: 0.0502 S32: 0.0558 S33: 0.0338 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2230 -28.5756 -2.6658 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0289 REMARK 3 T33: 0.1412 T12: -0.0299 REMARK 3 T13: 0.0240 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 16.4618 L22: 15.4841 REMARK 3 L33: 3.3485 L12: -11.9549 REMARK 3 L13: 2.5321 L23: 0.1462 REMARK 3 S TENSOR REMARK 3 S11: -0.1769 S12: 0.0892 S13: -0.1811 REMARK 3 S21: 0.3797 S22: 0.1732 S23: 0.7436 REMARK 3 S31: -0.0805 S32: -0.0859 S33: 0.0037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.79987 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 300, 0.2M CALCIUM ACETATE, REMARK 280 0.1M CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.15333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.23000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.07667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 205.38333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 164.30667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.15333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.07667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.23000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 205.38333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 202 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 203 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 9 CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 38 CA CB CG CD CE NZ REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 O REMARK 620 2 GLU A 56 OE2 106.3 REMARK 620 3 ASN A 76 O 166.8 82.7 REMARK 620 4 ASN A 76 OD1 87.4 93.0 82.4 REMARK 620 5 HOH A 214 O 89.3 91.9 100.2 174.7 REMARK 620 6 HOH A 237 O 84.8 169.0 86.3 86.7 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD2 REMARK 620 2 ASP A 89 OD2 80.7 REMARK 620 3 ACT A 204 O 94.6 89.1 REMARK 620 4 ACT A 204 O 89.1 94.6 175.2 REMARK 620 5 HOH A 215 O 92.9 173.2 89.0 87.7 REMARK 620 6 HOH A 215 O 173.2 92.9 87.7 89.0 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 206 REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL RESIDUES 87-90 (GLU-SER-ASP-LEU) CORRESPOND REMARK 999 TO THE C-TERMINAL TAIL OF HUMAN ALPHA-ACTININ-1, UNIPROT REMARK 999 ENTRY ACTN1_HUMAN, ACCESSION CODE P12814, SEQUENCE REMARK 999 POSITION 889-892. DBREF 2PKT A 1 86 UNP O00151 PDLI1_HUMAN 1 86 SEQADV 2PKT SER A 0 UNP O00151 CLONING ARTIFACT SEQADV 2PKT GLU A 87 UNP O00151 SEE REMARK 999 SEQADV 2PKT SER A 88 UNP O00151 SEE REMARK 999 SEQADV 2PKT ASP A 89 UNP O00151 SEE REMARK 999 SEQADV 2PKT LEU A 90 UNP O00151 SEE REMARK 999 SEQRES 1 A 91 SER MET THR THR GLN GLN ILE ASP LEU GLN GLY PRO GLY SEQRES 2 A 91 PRO TRP GLY PHE ARG LEU VAL GLY GLY LYS ASP PHE GLU SEQRES 3 A 91 GLN PRO LEU ALA ILE SER ARG VAL THR PRO GLY SER LYS SEQRES 4 A 91 ALA ALA LEU ALA ASN LEU CYS ILE GLY ASP VAL ILE THR SEQRES 5 A 91 ALA ILE ASP GLY GLU ASN THR SER ASN MET THR HIS LEU SEQRES 6 A 91 GLU ALA GLN ASN ARG ILE LYS GLY CYS THR ASP ASN LEU SEQRES 7 A 91 THR LEU THR VAL ALA ARG SER GLU HIS GLU SER ASP LEU HET CA A 201 1 HET CA A 202 1 HET CL A 203 1 HET ACT A 204 4 HET PG4 A 205 13 HET PEG A 206 6 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 CA 2(CA 2+) FORMUL 4 CL CL 1- FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 PG4 C8 H18 O5 FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *105(H2 O) HELIX 1 1 LYS A 22 GLU A 25 5 4 HELIX 2 2 SER A 37 ALA A 42 1 6 HELIX 3 3 THR A 62 GLY A 72 1 11 SHEET 1 A 4 MET A 1 GLN A 9 0 SHEET 2 A 4 ASN A 76 SER A 84 -1 O LEU A 77 N LEU A 8 SHEET 3 A 4 VAL A 49 ILE A 53 -1 N VAL A 49 O ALA A 82 SHEET 4 A 4 GLU A 56 ASN A 57 -1 O GLU A 56 N ILE A 53 SHEET 1 B 2 PHE A 16 GLY A 21 0 SHEET 2 B 2 GLN A 26 VAL A 33 -1 O ALA A 29 N VAL A 19 LINK O ASP A 54 CA CA A 201 10555 1555 2.38 LINK OE2 GLU A 56 CA CA A 201 10555 1555 2.38 LINK O ASN A 76 CA CA A 201 1555 1555 2.28 LINK OD1 ASN A 76 CA CA A 201 1555 1555 2.37 LINK OD2 ASP A 89 CA CA A 202 1555 1555 2.37 LINK OD2 ASP A 89 CA CA A 202 8435 1555 2.37 LINK CA CA A 201 O HOH A 214 1555 1555 2.22 LINK CA CA A 201 O HOH A 237 1555 1555 2.38 LINK CA CA A 202 O ACT A 204 1555 1555 2.40 LINK CA CA A 202 O ACT A 204 1555 8435 2.40 LINK CA CA A 202 O HOH A 215 1555 1555 2.33 LINK CA CA A 202 O HOH A 215 1555 8435 2.33 CISPEP 1 GLY A 10 PRO A 11 0 2.32 CISPEP 2 GLY A 12 PRO A 13 0 -1.50 SITE 1 AC1 5 ASP A 54 GLU A 56 ASN A 76 HOH A 214 SITE 2 AC1 5 HOH A 237 SITE 1 AC2 3 ASP A 89 ACT A 204 HOH A 215 SITE 1 AC3 1 THR A 34 SITE 1 AC4 5 ARG A 17 GLU A 87 ASP A 89 CA A 202 SITE 2 AC4 5 HOH A 232 SITE 1 AC5 10 LYS A 22 GLU A 25 GLN A 26 PRO A 27 SITE 2 AC5 10 LEU A 28 VAL A 49 ILE A 50 THR A 58 SITE 3 AC5 10 SER A 59 HOH A 238 SITE 1 AC6 3 GLY A 12 VAL A 33 PRO A 35 CRYST1 38.740 38.740 246.460 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025813 0.014903 0.000000 0.00000 SCALE2 0.000000 0.029806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004057 0.00000