HEADER SURFACE ACTIVE PROTEIN 19-APR-07 2PL7 TITLE ORHORHOMBIC CRYSTAL STRUCTURE OF HYDROPHOBIN HFBII IN THE PRESENCE OF TITLE 2 A DETERGENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROPHOBIN-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYDROPHOBIN II, HFBII SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_TAXID: 51453 KEYWDS HYDROPHOBIN, AMPHIPHILE, PROTEIN SURFACTANT, SURFACE ACTIVE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.KALLIO,J.P.ROUVINEN REVDAT 5 30-AUG-23 2PL7 1 HETSYN REVDAT 4 29-JUL-20 2PL7 1 COMPND REMARK HETNAM SITE REVDAT 3 24-FEB-09 2PL7 1 VERSN REVDAT 2 02-OCT-07 2PL7 1 JRNL REVDAT 1 17-JUL-07 2PL7 0 JRNL AUTH J.M.KALLIO,M.B.LINDER,J.ROUVINEN JRNL TITL CRYSTAL STRUCTURES OF HYDROPHOBIN HFBII IN THE PRESENCE OF JRNL TITL 2 DETERGENT IMPLICATE THE FORMATION OF FIBRILS AND MONOLAYER JRNL TITL 3 FILMS. JRNL REF J.BIOL.CHEM. V. 282 28733 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17636262 JRNL DOI 10.1074/JBC.M704238200 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.180 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2832 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 109088 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.163 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2396 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 45575 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1073.5 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 948.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 8 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 10287 REMARK 3 NUMBER OF RESTRAINTS : 12647 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.034 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.086 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.115 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.069 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.050 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.084 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.91 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI[111], REMARK 200 HORIZONTALLY FOCUSSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.35 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1R2M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM SULPHATE, 20% REMARK 280 POLYETHYLENE GLYCOL (MW2000), 0.1M TRIS (PH 8.5), PH 6.91, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 68 REMARK 465 GLY A 69 REMARK 465 THR A 70 REMARK 465 PHE A 71 REMARK 465 ILE B 68 REMARK 465 GLY B 69 REMARK 465 THR B 70 REMARK 465 PHE B 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 8 51.63 -99.06 REMARK 500 PHE B 8 54.09 -97.96 REMARK 500 VAL B 33 77.03 -109.32 REMARK 500 PRO B 56 50.03 -93.51 REMARK 500 ALA B 61 106.39 -161.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PL4 RELATED DB: PDB REMARK 900 SAME PROTEIN, ALSO WITH DETERGENT, DIFFERENT SPACE GROUP. REMARK 900 RELATED ID: 1R2M RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP. REMARK 900 RELATED ID: 2B97 RELATED DB: PDB REMARK 900 SAME PROTEIN AT ULTRA HIGH RESOLUTION. REMARK 900 RELATED ID: 2GVM RELATED DB: PDB REMARK 900 HOMOLOGIOUS HYDROPHOBIN FROM SAME ORGANISM AND WITH DETERGENT. REMARK 900 RELATED ID: 2FZ6 RELATED DB: PDB REMARK 900 HOMOLOGIOUS HYDROPHOBIN FROM SAME ORGANISM. DBREF 2PL7 A 1 71 UNP P79073 HYP2_TRIRE 16 86 DBREF 2PL7 B 1 71 UNP P79073 HYP2_TRIRE 16 86 SEQRES 1 A 71 ALA VAL CYS PRO THR GLY LEU PHE SER ASN PRO LEU CYS SEQRES 2 A 71 CYS ALA THR ASN VAL LEU ASP LEU ILE GLY VAL ASP CYS SEQRES 3 A 71 LYS THR PRO THR ILE ALA VAL ASP THR GLY ALA ILE PHE SEQRES 4 A 71 GLN ALA HIS CYS ALA SER LYS GLY SER LYS PRO LEU CYS SEQRES 5 A 71 CYS VAL ALA PRO VAL ALA ASP GLN ALA LEU LEU CYS GLN SEQRES 6 A 71 LYS ALA ILE GLY THR PHE SEQRES 1 B 71 ALA VAL CYS PRO THR GLY LEU PHE SER ASN PRO LEU CYS SEQRES 2 B 71 CYS ALA THR ASN VAL LEU ASP LEU ILE GLY VAL ASP CYS SEQRES 3 B 71 LYS THR PRO THR ILE ALA VAL ASP THR GLY ALA ILE PHE SEQRES 4 B 71 GLN ALA HIS CYS ALA SER LYS GLY SER LYS PRO LEU CYS SEQRES 5 B 71 CYS VAL ALA PRO VAL ALA ASP GLN ALA LEU LEU CYS GLN SEQRES 6 B 71 LYS ALA ILE GLY THR PHE HET SO4 B 150 10 HET HTG B1001 19 HETNAM SO4 SULFATE ION HETNAM HTG HEPTYL 1-THIO-BETA-D-GLUCOPYRANOSIDE HETSYN HTG HEPTYL 1-THIOHEXOPYRANOSIDE; HEPTYL 1-THIO-BETA-D- HETSYN 2 HTG GLUCOSIDE; HEPTYL 1-THIO-D-GLUCOSIDE; HEPTYL 1-THIO- HETSYN 3 HTG GLUCOSIDE FORMUL 3 SO4 O4 S 2- FORMUL 4 HTG C13 H26 O5 S FORMUL 5 HOH *149(H2 O) HELIX 1 1 THR A 35 SER A 45 1 11 HELIX 2 2 THR B 35 SER B 45 1 11 SHEET 1 A 5 ASN A 10 VAL A 18 0 SHEET 2 A 5 ILE A 22 LYS A 27 -1 O LYS A 27 N CYS A 13 SHEET 3 A 5 ASP A 59 LYS A 66 -1 O GLN A 60 N ASP A 25 SHEET 4 A 5 LYS A 49 CYS A 53 -1 N CYS A 52 O GLN A 65 SHEET 5 A 5 ASN A 10 VAL A 18 -1 N CYS A 14 O LYS A 49 SHEET 1 B 5 ASN B 10 VAL B 18 0 SHEET 2 B 5 ILE B 22 LYS B 27 -1 O LYS B 27 N CYS B 13 SHEET 3 B 5 ASP B 59 LYS B 66 -1 O LEU B 62 N GLY B 23 SHEET 4 B 5 LYS B 49 CYS B 53 -1 N CYS B 52 O GLN B 65 SHEET 5 B 5 ASN B 10 VAL B 18 -1 N ASN B 10 O CYS B 53 SSBOND 1 CYS A 3 CYS A 52 1555 1555 2.05 SSBOND 2 CYS A 13 CYS A 43 1555 1555 2.06 SSBOND 3 CYS A 14 CYS A 26 1555 1555 2.05 SSBOND 4 CYS A 53 CYS A 64 1555 1555 2.05 SSBOND 5 CYS B 3 CYS B 52 1555 1555 2.05 SSBOND 6 CYS B 13 CYS B 43 1555 1555 2.07 SSBOND 7 CYS B 14 CYS B 26 1555 1555 2.04 SSBOND 8 CYS B 53 CYS B 64 1555 1555 2.04 CRYST1 25.300 57.100 72.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013870 0.00000