HEADER PROTEIN TRANSPORT 20-APR-07 2PM9 TITLE CRYSTAL STRUCTURE OF YEAST SEC13/31 VERTEX ELEMENT OF THE COPII TITLE 2 VESICULAR COAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC31; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-411; COMPND 5 SYNONYM: PROTEIN WEB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC13; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: WEB1, SEC31; SOURCE 6 EXPRESSION_SYSTEM: HI5 INSECT CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932; SOURCE 11 GENE: SEC13, ANU3; SOURCE 12 EXPRESSION_SYSTEM: HI5 INSECT CELLS KEYWDS BETA PROPELLER, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.GOLDBERG,S.FATH,J.D.MANCIAS,X.BI REVDAT 7 03-APR-24 2PM9 1 REMARK REVDAT 6 21-FEB-24 2PM9 1 REMARK REVDAT 5 20-OCT-21 2PM9 1 SEQADV REVDAT 4 18-OCT-17 2PM9 1 REMARK REVDAT 3 24-FEB-09 2PM9 1 VERSN REVDAT 2 17-JUL-07 2PM9 1 JRNL REVDAT 1 03-JUL-07 2PM9 0 JRNL AUTH S.FATH,J.D.MANCIAS,X.BI,J.GOLDBERG JRNL TITL STRUCTURE AND ORGANIZATION OF COAT PROTEINS IN THE COPII JRNL TITL 2 CAGE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 129 1325 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17604721 JRNL DOI 10.1016/J.CELL.2007.05.036 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 18996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 651 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE : 0.5240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.92600 REMARK 3 B22 (A**2) : -10.92600 REMARK 3 B33 (A**2) : 21.85100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.636 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.025 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.842 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.972 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.460 ; 4.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 28.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20444 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : 0.34700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, RESOLVE 2.01 REMARK 200 STARTING MODEL: YEAST SEC13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 3350, 0.1M TRI-SODIUM CITRATE, REMARK 280 10MM MANGANESE CHLORIDE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.93300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.89950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.96650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY UNIT INVOLVES THIS STRUCTURE OF THE REMARK 300 SEC13/31 VERTEX ELEMENT TOGETHER WITH THE SEC13/31 EDGE ELEMENT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 340 REMARK 465 GLU A 341 REMARK 465 THR A 342 REMARK 465 GLU A 343 REMARK 465 THR A 344 REMARK 465 LYS A 345 REMARK 465 GLN A 346 REMARK 465 GLN A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 GLU A 350 REMARK 465 THR A 351 REMARK 465 ASP A 352 REMARK 465 PHE A 353 REMARK 465 TRP A 354 REMARK 465 ASN A 355 REMARK 465 ASN A 356 REMARK 465 VAL A 357 REMARK 465 SER A 358 REMARK 465 ARG A 359 REMARK 465 GLU A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 411 REMARK 465 MET B 1 REMARK 465 ILE B 158 REMARK 465 GLU B 159 REMARK 465 GLU B 160 REMARK 465 ASP B 161 REMARK 465 GLY B 162 REMARK 465 GLU B 163 REMARK 465 HIS B 164 REMARK 465 ASN B 165 REMARK 465 GLY B 166 REMARK 465 THR B 167 REMARK 465 LYS B 168 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 VAL B 295 REMARK 465 HIS B 296 REMARK 465 GLN B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 368 N HIS A 370 2.02 REMARK 500 O ASN A 73 N LYS A 75 2.11 REMARK 500 O HIS A 72 ND2 ASN A 74 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 313 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -143.45 -150.96 REMARK 500 ARG A 9 -161.75 -69.63 REMARK 500 THR A 10 122.09 -7.78 REMARK 500 ALA A 11 152.42 172.35 REMARK 500 SER A 16 -145.38 -75.23 REMARK 500 HIS A 17 23.59 -153.85 REMARK 500 ASP A 33 -161.33 -55.51 REMARK 500 THR A 38 -61.55 -136.41 REMARK 500 LEU A 42 36.44 71.69 REMARK 500 LEU A 48 -68.74 -98.87 REMARK 500 ALA A 49 150.19 -17.24 REMARK 500 ASP A 51 23.37 45.74 REMARK 500 SER A 52 50.45 26.12 REMARK 500 ALA A 57 116.64 -165.11 REMARK 500 LEU A 59 69.63 -168.53 REMARK 500 GLN A 60 135.41 -27.47 REMARK 500 ASP A 62 -72.17 -61.99 REMARK 500 HIS A 72 76.66 -65.61 REMARK 500 ASN A 73 -9.73 64.75 REMARK 500 ASN A 74 32.77 -54.09 REMARK 500 LYS A 75 56.06 37.71 REMARK 500 SER A 90 -59.34 -121.44 REMARK 500 THR A 91 106.49 64.14 REMARK 500 GLU A 93 106.16 94.43 REMARK 500 ALA A 94 134.11 -29.22 REMARK 500 ASN A 95 -13.67 85.45 REMARK 500 ALA A 97 122.03 -174.83 REMARK 500 MET A 101 -139.73 -98.74 REMARK 500 SER A 105 37.53 -173.41 REMARK 500 ASN A 106 7.33 -67.86 REMARK 500 SER A 109 68.73 23.71 REMARK 500 SER A 110 111.28 160.73 REMARK 500 LYS A 112 -63.80 -103.89 REMARK 500 ASP A 121 0.88 -55.12 REMARK 500 GLU A 143 -90.69 -37.63 REMARK 500 SER A 146 -54.63 -14.24 REMARK 500 ASN A 147 27.26 163.97 REMARK 500 TYR A 148 135.33 -27.98 REMARK 500 GLN A 155 149.43 178.46 REMARK 500 SER A 156 -97.89 58.47 REMARK 500 SER A 159 -72.40 172.79 REMARK 500 VAL A 160 9.42 -160.17 REMARK 500 LYS A 193 71.50 35.67 REMARK 500 LYS A 194 153.46 160.60 REMARK 500 SER A 200 110.20 -166.93 REMARK 500 THR A 202 0.53 -158.47 REMARK 500 PRO A 204 -14.18 -35.36 REMARK 500 PRO A 219 2.36 -67.53 REMARK 500 LYS A 220 -47.77 -144.60 REMARK 500 SER A 231 133.23 -36.60 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PM6 RELATED DB: PDB REMARK 900 EDGE ELEMENT OF THE SEC13/31 COMPLEX, NATIVE PROTEIN REMARK 900 RELATED ID: 2PM7 RELATED DB: PDB REMARK 900 EDGE ELEMENT OF THE SEC13/31 COMPLEX, SELENOMETHIONINE PROTEIN DBREF 2PM9 A 1 411 UNP P38968 WEB1_YEAST 1 411 DBREF 2PM9 B 1 297 UNP Q04491 SEC13_YEAST 1 297 SEQADV 2PM9 GLY A -4 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 ALA A -3 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 MET A -2 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 GLY A -1 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 SER A 0 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 MET B 11 UNP Q04491 LEU 11 ENGINEERED MUTATION SEQADV 2PM9 MET B 17 UNP Q04491 LEU 17 ENGINEERED MUTATION SEQADV 2PM9 MET B 24 UNP Q04491 LEU 24 ENGINEERED MUTATION SEQADV 2PM9 MET B 80 UNP Q04491 LEU 80 ENGINEERED MUTATION SEQADV 2PM9 MET B 115 UNP Q04491 LEU 115 ENGINEERED MUTATION SEQADV 2PM9 MET B 222 UNP Q04491 LEU 222 ENGINEERED MUTATION SEQRES 1 A 416 GLY ALA MET GLY SER MET VAL LYS LEU ALA GLU PHE SER SEQRES 2 A 416 ARG THR ALA THR PHE ALA TRP SER HIS ASP LYS ILE PRO SEQRES 3 A 416 LEU LEU VAL SER GLY THR VAL SER GLY THR VAL ASP ALA SEQRES 4 A 416 ASN PHE SER THR ASP SER SER LEU GLU LEU TRP SER LEU SEQRES 5 A 416 LEU ALA ALA ASP SER GLU LYS PRO ILE ALA SER LEU GLN SEQRES 6 A 416 VAL ASP SER LYS PHE ASN ASP LEU ASP TRP SER HIS ASN SEQRES 7 A 416 ASN LYS ILE ILE ALA GLY ALA LEU ASP ASN GLY SER LEU SEQRES 8 A 416 GLU LEU TYR SER THR ASN GLU ALA ASN ASN ALA ILE ASN SEQRES 9 A 416 SER MET ALA ARG PHE SER ASN HIS SER SER SER VAL LYS SEQRES 10 A 416 THR VAL LYS PHE ASN ALA LYS GLN ASP ASN VAL LEU ALA SEQRES 11 A 416 SER GLY GLY ASN ASN GLY GLU ILE PHE ILE TRP ASP MET SEQRES 12 A 416 ASN LYS CYS THR GLU SER PRO SER ASN TYR THR PRO LEU SEQRES 13 A 416 THR PRO GLY GLN SER MET SER SER VAL ASP GLU VAL ILE SEQRES 14 A 416 SER LEU ALA TRP ASN GLN SER LEU ALA HIS VAL PHE ALA SEQRES 15 A 416 SER ALA GLY SER SER ASN PHE ALA SER ILE TRP ASP LEU SEQRES 16 A 416 LYS ALA LYS LYS GLU VAL ILE HIS LEU SER TYR THR SER SEQRES 17 A 416 PRO ASN SER GLY ILE LYS GLN GLN LEU SER VAL VAL GLU SEQRES 18 A 416 TRP HIS PRO LYS ASN SER THR ARG VAL ALA THR ALA THR SEQRES 19 A 416 GLY SER ASP ASN ASP PRO SER ILE LEU ILE TRP ASP LEU SEQRES 20 A 416 ARG ASN ALA ASN THR PRO LEU GLN THR LEU ASN GLN GLY SEQRES 21 A 416 HIS GLN LYS GLY ILE LEU SER LEU ASP TRP CYS HIS GLN SEQRES 22 A 416 ASP GLU HIS LEU LEU LEU SER SER GLY ARG ASP ASN THR SEQRES 23 A 416 VAL LEU LEU TRP ASN PRO GLU SER ALA GLU GLN LEU SER SEQRES 24 A 416 GLN PHE PRO ALA ARG GLY ASN TRP CYS PHE LYS THR LYS SEQRES 25 A 416 PHE ALA PRO GLU ALA PRO ASP LEU PHE ALA CYS ALA SER SEQRES 26 A 416 PHE ASP ASN LYS ILE GLU VAL GLN THR LEU GLN ASN LEU SEQRES 27 A 416 THR ASN THR LEU ASP GLU GLN GLU THR GLU THR LYS GLN SEQRES 28 A 416 GLN GLU SER GLU THR ASP PHE TRP ASN ASN VAL SER ARG SEQRES 29 A 416 GLU GLU SER LYS GLU LYS PRO SER VAL PHE HIS LEU GLN SEQRES 30 A 416 ALA PRO THR TRP TYR GLY GLU PRO SER PRO ALA ALA HIS SEQRES 31 A 416 TRP ALA PHE GLY GLY LYS LEU VAL GLN ILE THR PRO ASP SEQRES 32 A 416 GLY LYS GLY VAL SER ILE THR ASN PRO LYS ILE SER GLY SEQRES 1 B 297 MET VAL VAL ILE ALA ASN ALA HIS ASN GLU MET ILE HIS SEQRES 2 B 297 ASP ALA VAL MET ASP TYR TYR GLY LYS ARG MET ALA THR SEQRES 3 B 297 CYS SER SER ASP LYS THR ILE LYS ILE PHE GLU VAL GLU SEQRES 4 B 297 GLY GLU THR HIS LYS LEU ILE ASP THR LEU THR GLY HIS SEQRES 5 B 297 GLU GLY PRO VAL TRP ARG VAL ASP TRP ALA HIS PRO LYS SEQRES 6 B 297 PHE GLY THR ILE LEU ALA SER CYS SER TYR ASP GLY LYS SEQRES 7 B 297 VAL MET ILE TRP LYS GLU GLU ASN GLY ARG TRP SER GLN SEQRES 8 B 297 ILE ALA VAL HIS ALA VAL HIS SER ALA SER VAL ASN SER SEQRES 9 B 297 VAL GLN TRP ALA PRO HIS GLU TYR GLY PRO MET LEU LEU SEQRES 10 B 297 VAL ALA SER SER ASP GLY LYS VAL SER VAL VAL GLU PHE SEQRES 11 B 297 LYS GLU ASN GLY THR THR SER PRO ILE ILE ILE ASP ALA SEQRES 12 B 297 HIS ALA ILE GLY VAL ASN SER ALA SER TRP ALA PRO ALA SEQRES 13 B 297 THR ILE GLU GLU ASP GLY GLU HIS ASN GLY THR LYS GLU SEQRES 14 B 297 SER ARG LYS PHE VAL THR GLY GLY ALA ASP ASN LEU VAL SEQRES 15 B 297 LYS ILE TRP LYS TYR ASN SER ASP ALA GLN THR TYR VAL SEQRES 16 B 297 LEU GLU SER THR LEU GLU GLY HIS SER ASP TRP VAL ARG SEQRES 17 B 297 ASP VAL ALA TRP SER PRO THR VAL LEU LEU ARG SER TYR SEQRES 18 B 297 MET ALA SER VAL SER GLN ASP ARG THR CYS ILE ILE TRP SEQRES 19 B 297 THR GLN ASP ASN GLU GLN GLY PRO TRP LYS LYS THR LEU SEQRES 20 B 297 LEU LYS GLU GLU LYS PHE PRO ASP VAL LEU TRP ARG ALA SEQRES 21 B 297 SER TRP SER LEU SER GLY ASN VAL LEU ALA LEU SER GLY SEQRES 22 B 297 GLY ASP ASN LYS VAL THR LEU TRP LYS GLU ASN LEU GLU SEQRES 23 B 297 GLY LYS TRP GLU PRO ALA GLY GLU VAL HIS GLN FORMUL 3 HOH *28(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 HIS B 63 GLY B 67 5 5 HELIX 3 3 GLU B 85 ARG B 88 5 4 SHEET 1 A 4 GLU A 6 ARG A 9 0 SHEET 2 A 4 LYS A 324 THR A 329 -1 O ILE A 325 N SER A 8 SHEET 3 A 4 LEU A 315 CYS A 318 -1 N PHE A 316 O GLN A 328 SHEET 4 A 4 THR A 306 PHE A 308 -1 N LYS A 307 O ALA A 317 SHEET 1 B 2 LEU A 22 SER A 25 0 SHEET 2 B 2 GLU A 43 SER A 46 -1 O GLU A 43 N SER A 25 SHEET 1 C 4 PHE A 65 TRP A 70 0 SHEET 2 C 4 ILE A 77 LEU A 81 -1 O ALA A 80 N ASN A 66 SHEET 3 C 4 LEU A 86 TYR A 89 -1 O GLU A 87 N GLY A 79 SHEET 4 C 4 SER A 100 ARG A 103 -1 O ALA A 102 N LEU A 88 SHEET 1 D 3 THR A 113 PHE A 116 0 SHEET 2 D 3 LEU A 124 GLY A 127 -1 O ALA A 125 N LYS A 115 SHEET 3 D 3 ILE A 133 PHE A 134 -1 O PHE A 134 N SER A 126 SHEET 1 E 4 SER A 165 TRP A 168 0 SHEET 2 E 4 VAL A 175 ALA A 179 -1 O ALA A 177 N ALA A 167 SHEET 3 E 4 ALA A 185 ASP A 189 -1 O TRP A 188 N PHE A 176 SHEET 4 E 4 LYS A 194 LEU A 199 -1 O VAL A 196 N ILE A 187 SHEET 1 F 3 LEU A 212 TRP A 217 0 SHEET 2 F 3 ARG A 224 THR A 229 -1 O ALA A 226 N GLU A 216 SHEET 3 F 3 ILE A 239 ASP A 241 -1 O TRP A 240 N VAL A 225 SHEET 1 G 4 ILE A 260 TRP A 265 0 SHEET 2 G 4 LEU A 273 GLY A 277 -1 O LEU A 274 N ASP A 264 SHEET 3 G 4 THR A 281 TRP A 285 -1 O LEU A 283 N SER A 275 SHEET 4 G 4 GLN A 292 PRO A 297 -1 O PHE A 296 N VAL A 282 SHEET 1 H 2 HIS A 385 ALA A 387 0 SHEET 2 H 2 LYS A 391 VAL A 393 -1 O VAL A 393 N HIS A 385 SHEET 1 I 4 ILE B 12 ALA B 15 0 SHEET 2 I 4 ALA B 25 SER B 28 -1 O CYS B 27 N HIS B 13 SHEET 3 I 4 THR B 32 GLU B 39 -1 O LYS B 34 N THR B 26 SHEET 4 I 4 THR B 42 THR B 50 -1 N THR B 42 O GLU B 39 SHEET 1 J 4 VAL B 56 TRP B 61 0 SHEET 2 J 4 ILE B 69 SER B 74 -1 O CYS B 73 N TRP B 57 SHEET 3 J 4 VAL B 79 LYS B 83 -1 O MET B 80 N SER B 72 SHEET 4 J 4 SER B 90 HIS B 95 -1 O HIS B 95 N VAL B 79 SHEET 1 K 4 VAL B 102 TRP B 107 0 SHEET 2 K 4 MET B 115 SER B 120 -1 O LEU B 117 N GLN B 106 SHEET 3 K 4 LYS B 124 GLU B 129 -1 O SER B 126 N VAL B 118 SHEET 4 K 4 ILE B 139 ASP B 142 -1 O ILE B 139 N VAL B 127 SHEET 1 L 4 VAL B 148 SER B 150 0 SHEET 2 L 4 LYS B 172 GLY B 177 -1 O GLY B 176 N ASN B 149 SHEET 3 L 4 VAL B 182 LYS B 186 -1 O LYS B 183 N THR B 175 SHEET 4 L 4 VAL B 195 LEU B 196 -1 O VAL B 195 N LYS B 186 SHEET 1 M 3 ASP B 209 TRP B 212 0 SHEET 2 M 3 SER B 220 SER B 226 -1 O VAL B 225 N ASP B 209 SHEET 3 M 3 THR B 230 CYS B 231 -1 O THR B 230 N SER B 226 SHEET 1 N 3 ASP B 209 TRP B 212 0 SHEET 2 N 3 SER B 220 SER B 226 -1 O VAL B 225 N ASP B 209 SHEET 3 N 3 TRP B 234 GLN B 236 -1 O GLN B 236 N SER B 220 SHEET 1 O 3 ARG B 259 TRP B 262 0 SHEET 2 O 3 LEU B 269 SER B 272 -1 O ALA B 270 N SER B 261 SHEET 3 O 3 VAL B 278 TRP B 281 -1 O TRP B 281 N LEU B 269 CRYST1 155.163 155.163 59.866 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016704 0.00000 MASTER 386 0 0 3 51 0 0 6 5196 2 0 55 END