HEADER PROTEIN TRANSPORT 20-APR-07 2PM9 TITLE CRYSTAL STRUCTURE OF YEAST SEC13/31 VERTEX ELEMENT OF THE COPII TITLE 2 VESICULAR COAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC31; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-411; COMPND 5 SYNONYM: PROTEIN WEB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC13; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: WEB1, SEC31; SOURCE 6 EXPRESSION_SYSTEM: HI5 INSECT CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932; SOURCE 11 GENE: SEC13, ANU3; SOURCE 12 EXPRESSION_SYSTEM: HI5 INSECT CELLS KEYWDS BETA PROPELLER, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.GOLDBERG,S.FATH,J.D.MANCIAS,X.BI REVDAT 7 03-APR-24 2PM9 1 REMARK REVDAT 6 21-FEB-24 2PM9 1 REMARK REVDAT 5 20-OCT-21 2PM9 1 SEQADV REVDAT 4 18-OCT-17 2PM9 1 REMARK REVDAT 3 24-FEB-09 2PM9 1 VERSN REVDAT 2 17-JUL-07 2PM9 1 JRNL REVDAT 1 03-JUL-07 2PM9 0 JRNL AUTH S.FATH,J.D.MANCIAS,X.BI,J.GOLDBERG JRNL TITL STRUCTURE AND ORGANIZATION OF COAT PROTEINS IN THE COPII JRNL TITL 2 CAGE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 129 1325 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17604721 JRNL DOI 10.1016/J.CELL.2007.05.036 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 18996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 651 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE : 0.5240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.92600 REMARK 3 B22 (A**2) : -10.92600 REMARK 3 B33 (A**2) : 21.85100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.636 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.025 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.842 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.972 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.460 ; 4.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 28.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20444 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : 0.34700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, RESOLVE 2.01 REMARK 200 STARTING MODEL: YEAST SEC13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 3350, 0.1M TRI-SODIUM CITRATE, REMARK 280 10MM MANGANESE CHLORIDE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.93300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.89950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.96650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY UNIT INVOLVES THIS STRUCTURE OF THE REMARK 300 SEC13/31 VERTEX ELEMENT TOGETHER WITH THE SEC13/31 EDGE ELEMENT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 340 REMARK 465 GLU A 341 REMARK 465 THR A 342 REMARK 465 GLU A 343 REMARK 465 THR A 344 REMARK 465 LYS A 345 REMARK 465 GLN A 346 REMARK 465 GLN A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 GLU A 350 REMARK 465 THR A 351 REMARK 465 ASP A 352 REMARK 465 PHE A 353 REMARK 465 TRP A 354 REMARK 465 ASN A 355 REMARK 465 ASN A 356 REMARK 465 VAL A 357 REMARK 465 SER A 358 REMARK 465 ARG A 359 REMARK 465 GLU A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 411 REMARK 465 MET B 1 REMARK 465 ILE B 158 REMARK 465 GLU B 159 REMARK 465 GLU B 160 REMARK 465 ASP B 161 REMARK 465 GLY B 162 REMARK 465 GLU B 163 REMARK 465 HIS B 164 REMARK 465 ASN B 165 REMARK 465 GLY B 166 REMARK 465 THR B 167 REMARK 465 LYS B 168 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 VAL B 295 REMARK 465 HIS B 296 REMARK 465 GLN B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 368 N HIS A 370 2.02 REMARK 500 O ASN A 73 N LYS A 75 2.11 REMARK 500 O HIS A 72 ND2 ASN A 74 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 313 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -143.45 -150.96 REMARK 500 ARG A 9 -161.75 -69.63 REMARK 500 THR A 10 122.09 -7.78 REMARK 500 ALA A 11 152.42 172.35 REMARK 500 SER A 16 -145.38 -75.23 REMARK 500 HIS A 17 23.59 -153.85 REMARK 500 ASP A 33 -161.33 -55.51 REMARK 500 THR A 38 -61.55 -136.41 REMARK 500 LEU A 42 36.44 71.69 REMARK 500 LEU A 48 -68.74 -98.87 REMARK 500 ALA A 49 150.19 -17.24 REMARK 500 ASP A 51 23.37 45.74 REMARK 500 SER A 52 50.45 26.12 REMARK 500 ALA A 57 116.64 -165.11 REMARK 500 LEU A 59 69.63 -168.53 REMARK 500 GLN A 60 135.41 -27.47 REMARK 500 ASP A 62 -72.17 -61.99 REMARK 500 HIS A 72 76.66 -65.61 REMARK 500 ASN A 73 -9.73 64.75 REMARK 500 ASN A 74 32.77 -54.09 REMARK 500 LYS A 75 56.06 37.71 REMARK 500 SER A 90 -59.34 -121.44 REMARK 500 THR A 91 106.49 64.14 REMARK 500 GLU A 93 106.16 94.43 REMARK 500 ALA A 94 134.11 -29.22 REMARK 500 ASN A 95 -13.67 85.45 REMARK 500 ALA A 97 122.03 -174.83 REMARK 500 MET A 101 -139.73 -98.74 REMARK 500 SER A 105 37.53 -173.41 REMARK 500 ASN A 106 7.33 -67.86 REMARK 500 SER A 109 68.73 23.71 REMARK 500 SER A 110 111.28 160.73 REMARK 500 LYS A 112 -63.80 -103.89 REMARK 500 ASP A 121 0.88 -55.12 REMARK 500 GLU A 143 -90.69 -37.63 REMARK 500 SER A 146 -54.63 -14.24 REMARK 500 ASN A 147 27.26 163.97 REMARK 500 TYR A 148 135.33 -27.98 REMARK 500 GLN A 155 149.43 178.46 REMARK 500 SER A 156 -97.89 58.47 REMARK 500 SER A 159 -72.40 172.79 REMARK 500 VAL A 160 9.42 -160.17 REMARK 500 LYS A 193 71.50 35.67 REMARK 500 LYS A 194 153.46 160.60 REMARK 500 SER A 200 110.20 -166.93 REMARK 500 THR A 202 0.53 -158.47 REMARK 500 PRO A 204 -14.18 -35.36 REMARK 500 PRO A 219 2.36 -67.53 REMARK 500 LYS A 220 -47.77 -144.60 REMARK 500 SER A 231 133.23 -36.60 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PM6 RELATED DB: PDB REMARK 900 EDGE ELEMENT OF THE SEC13/31 COMPLEX, NATIVE PROTEIN REMARK 900 RELATED ID: 2PM7 RELATED DB: PDB REMARK 900 EDGE ELEMENT OF THE SEC13/31 COMPLEX, SELENOMETHIONINE PROTEIN DBREF 2PM9 A 1 411 UNP P38968 WEB1_YEAST 1 411 DBREF 2PM9 B 1 297 UNP Q04491 SEC13_YEAST 1 297 SEQADV 2PM9 GLY A -4 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 ALA A -3 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 MET A -2 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 GLY A -1 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 SER A 0 UNP P38968 CLONING ARTIFACT SEQADV 2PM9 MET B 11 UNP Q04491 LEU 11 ENGINEERED MUTATION SEQADV 2PM9 MET B 17 UNP Q04491 LEU 17 ENGINEERED MUTATION SEQADV 2PM9 MET B 24 UNP Q04491 LEU 24 ENGINEERED MUTATION SEQADV 2PM9 MET B 80 UNP Q04491 LEU 80 ENGINEERED MUTATION SEQADV 2PM9 MET B 115 UNP Q04491 LEU 115 ENGINEERED MUTATION SEQADV 2PM9 MET B 222 UNP Q04491 LEU 222 ENGINEERED MUTATION SEQRES 1 A 416 GLY ALA MET GLY SER MET VAL LYS LEU ALA GLU PHE SER SEQRES 2 A 416 ARG THR ALA THR PHE ALA TRP SER HIS ASP LYS ILE PRO SEQRES 3 A 416 LEU LEU VAL SER GLY THR VAL SER GLY THR VAL ASP ALA SEQRES 4 A 416 ASN PHE SER THR ASP SER SER LEU GLU LEU TRP SER LEU SEQRES 5 A 416 LEU ALA ALA ASP SER GLU LYS PRO ILE ALA SER LEU GLN SEQRES 6 A 416 VAL ASP SER LYS PHE ASN ASP LEU ASP TRP SER HIS ASN SEQRES 7 A 416 ASN LYS ILE ILE ALA GLY ALA LEU ASP ASN GLY SER LEU SEQRES 8 A 416 GLU LEU TYR SER THR ASN GLU ALA ASN ASN ALA ILE ASN SEQRES 9 A 416 SER MET ALA ARG PHE SER ASN HIS SER SER SER VAL LYS SEQRES 10 A 416 THR VAL LYS PHE ASN ALA LYS GLN ASP ASN VAL LEU ALA SEQRES 11 A 416 SER GLY GLY ASN ASN GLY GLU ILE PHE ILE TRP ASP MET SEQRES 12 A 416 ASN LYS CYS THR GLU SER PRO SER ASN TYR THR PRO LEU SEQRES 13 A 416 THR PRO GLY GLN SER MET SER SER VAL ASP GLU VAL ILE SEQRES 14 A 416 SER LEU ALA TRP ASN GLN SER LEU ALA HIS VAL PHE ALA SEQRES 15 A 416 SER ALA GLY SER SER ASN PHE ALA SER ILE TRP ASP LEU SEQRES 16 A 416 LYS ALA LYS LYS GLU VAL ILE HIS LEU SER TYR THR SER SEQRES 17 A 416 PRO ASN SER GLY ILE LYS GLN GLN LEU SER VAL VAL GLU SEQRES 18 A 416 TRP HIS PRO LYS ASN SER THR ARG VAL ALA THR ALA THR SEQRES 19 A 416 GLY SER ASP ASN ASP PRO SER ILE LEU ILE TRP ASP LEU SEQRES 20 A 416 ARG ASN ALA ASN THR PRO LEU GLN THR LEU ASN GLN GLY SEQRES 21 A 416 HIS GLN LYS GLY ILE LEU SER LEU ASP TRP CYS HIS GLN SEQRES 22 A 416 ASP GLU HIS LEU LEU LEU SER SER GLY ARG ASP ASN THR SEQRES 23 A 416 VAL LEU LEU TRP ASN PRO GLU SER ALA GLU GLN LEU SER SEQRES 24 A 416 GLN PHE PRO ALA ARG GLY ASN TRP CYS PHE LYS THR LYS SEQRES 25 A 416 PHE ALA PRO GLU ALA PRO ASP LEU PHE ALA CYS ALA SER SEQRES 26 A 416 PHE ASP ASN LYS ILE GLU VAL GLN THR LEU GLN ASN LEU SEQRES 27 A 416 THR ASN THR LEU ASP GLU GLN GLU THR GLU THR LYS GLN SEQRES 28 A 416 GLN GLU SER GLU THR ASP PHE TRP ASN ASN VAL SER ARG SEQRES 29 A 416 GLU GLU SER LYS GLU LYS PRO SER VAL PHE HIS LEU GLN SEQRES 30 A 416 ALA PRO THR TRP TYR GLY GLU PRO SER PRO ALA ALA HIS SEQRES 31 A 416 TRP ALA PHE GLY GLY LYS LEU VAL GLN ILE THR PRO ASP SEQRES 32 A 416 GLY LYS GLY VAL SER ILE THR ASN PRO LYS ILE SER GLY SEQRES 1 B 297 MET VAL VAL ILE ALA ASN ALA HIS ASN GLU MET ILE HIS SEQRES 2 B 297 ASP ALA VAL MET ASP TYR TYR GLY LYS ARG MET ALA THR SEQRES 3 B 297 CYS SER SER ASP LYS THR ILE LYS ILE PHE GLU VAL GLU SEQRES 4 B 297 GLY GLU THR HIS LYS LEU ILE ASP THR LEU THR GLY HIS SEQRES 5 B 297 GLU GLY PRO VAL TRP ARG VAL ASP TRP ALA HIS PRO LYS SEQRES 6 B 297 PHE GLY THR ILE LEU ALA SER CYS SER TYR ASP GLY LYS SEQRES 7 B 297 VAL MET ILE TRP LYS GLU GLU ASN GLY ARG TRP SER GLN SEQRES 8 B 297 ILE ALA VAL HIS ALA VAL HIS SER ALA SER VAL ASN SER SEQRES 9 B 297 VAL GLN TRP ALA PRO HIS GLU TYR GLY PRO MET LEU LEU SEQRES 10 B 297 VAL ALA SER SER ASP GLY LYS VAL SER VAL VAL GLU PHE SEQRES 11 B 297 LYS GLU ASN GLY THR THR SER PRO ILE ILE ILE ASP ALA SEQRES 12 B 297 HIS ALA ILE GLY VAL ASN SER ALA SER TRP ALA PRO ALA SEQRES 13 B 297 THR ILE GLU GLU ASP GLY GLU HIS ASN GLY THR LYS GLU SEQRES 14 B 297 SER ARG LYS PHE VAL THR GLY GLY ALA ASP ASN LEU VAL SEQRES 15 B 297 LYS ILE TRP LYS TYR ASN SER ASP ALA GLN THR TYR VAL SEQRES 16 B 297 LEU GLU SER THR LEU GLU GLY HIS SER ASP TRP VAL ARG SEQRES 17 B 297 ASP VAL ALA TRP SER PRO THR VAL LEU LEU ARG SER TYR SEQRES 18 B 297 MET ALA SER VAL SER GLN ASP ARG THR CYS ILE ILE TRP SEQRES 19 B 297 THR GLN ASP ASN GLU GLN GLY PRO TRP LYS LYS THR LEU SEQRES 20 B 297 LEU LYS GLU GLU LYS PHE PRO ASP VAL LEU TRP ARG ALA SEQRES 21 B 297 SER TRP SER LEU SER GLY ASN VAL LEU ALA LEU SER GLY SEQRES 22 B 297 GLY ASP ASN LYS VAL THR LEU TRP LYS GLU ASN LEU GLU SEQRES 23 B 297 GLY LYS TRP GLU PRO ALA GLY GLU VAL HIS GLN FORMUL 3 HOH *28(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 HIS B 63 GLY B 67 5 5 HELIX 3 3 GLU B 85 ARG B 88 5 4 SHEET 1 A 4 GLU A 6 ARG A 9 0 SHEET 2 A 4 LYS A 324 THR A 329 -1 O ILE A 325 N SER A 8 SHEET 3 A 4 LEU A 315 CYS A 318 -1 N PHE A 316 O GLN A 328 SHEET 4 A 4 THR A 306 PHE A 308 -1 N LYS A 307 O ALA A 317 SHEET 1 B 2 LEU A 22 SER A 25 0 SHEET 2 B 2 GLU A 43 SER A 46 -1 O GLU A 43 N SER A 25 SHEET 1 C 4 PHE A 65 TRP A 70 0 SHEET 2 C 4 ILE A 77 LEU A 81 -1 O ALA A 80 N ASN A 66 SHEET 3 C 4 LEU A 86 TYR A 89 -1 O GLU A 87 N GLY A 79 SHEET 4 C 4 SER A 100 ARG A 103 -1 O ALA A 102 N LEU A 88 SHEET 1 D 3 THR A 113 PHE A 116 0 SHEET 2 D 3 LEU A 124 GLY A 127 -1 O ALA A 125 N LYS A 115 SHEET 3 D 3 ILE A 133 PHE A 134 -1 O PHE A 134 N SER A 126 SHEET 1 E 4 SER A 165 TRP A 168 0 SHEET 2 E 4 VAL A 175 ALA A 179 -1 O ALA A 177 N ALA A 167 SHEET 3 E 4 ALA A 185 ASP A 189 -1 O TRP A 188 N PHE A 176 SHEET 4 E 4 LYS A 194 LEU A 199 -1 O VAL A 196 N ILE A 187 SHEET 1 F 3 LEU A 212 TRP A 217 0 SHEET 2 F 3 ARG A 224 THR A 229 -1 O ALA A 226 N GLU A 216 SHEET 3 F 3 ILE A 239 ASP A 241 -1 O TRP A 240 N VAL A 225 SHEET 1 G 4 ILE A 260 TRP A 265 0 SHEET 2 G 4 LEU A 273 GLY A 277 -1 O LEU A 274 N ASP A 264 SHEET 3 G 4 THR A 281 TRP A 285 -1 O LEU A 283 N SER A 275 SHEET 4 G 4 GLN A 292 PRO A 297 -1 O PHE A 296 N VAL A 282 SHEET 1 H 2 HIS A 385 ALA A 387 0 SHEET 2 H 2 LYS A 391 VAL A 393 -1 O VAL A 393 N HIS A 385 SHEET 1 I 4 ILE B 12 ALA B 15 0 SHEET 2 I 4 ALA B 25 SER B 28 -1 O CYS B 27 N HIS B 13 SHEET 3 I 4 THR B 32 GLU B 39 -1 O LYS B 34 N THR B 26 SHEET 4 I 4 THR B 42 THR B 50 -1 N THR B 42 O GLU B 39 SHEET 1 J 4 VAL B 56 TRP B 61 0 SHEET 2 J 4 ILE B 69 SER B 74 -1 O CYS B 73 N TRP B 57 SHEET 3 J 4 VAL B 79 LYS B 83 -1 O MET B 80 N SER B 72 SHEET 4 J 4 SER B 90 HIS B 95 -1 O HIS B 95 N VAL B 79 SHEET 1 K 4 VAL B 102 TRP B 107 0 SHEET 2 K 4 MET B 115 SER B 120 -1 O LEU B 117 N GLN B 106 SHEET 3 K 4 LYS B 124 GLU B 129 -1 O SER B 126 N VAL B 118 SHEET 4 K 4 ILE B 139 ASP B 142 -1 O ILE B 139 N VAL B 127 SHEET 1 L 4 VAL B 148 SER B 150 0 SHEET 2 L 4 LYS B 172 GLY B 177 -1 O GLY B 176 N ASN B 149 SHEET 3 L 4 VAL B 182 LYS B 186 -1 O LYS B 183 N THR B 175 SHEET 4 L 4 VAL B 195 LEU B 196 -1 O VAL B 195 N LYS B 186 SHEET 1 M 3 ASP B 209 TRP B 212 0 SHEET 2 M 3 SER B 220 SER B 226 -1 O VAL B 225 N ASP B 209 SHEET 3 M 3 THR B 230 CYS B 231 -1 O THR B 230 N SER B 226 SHEET 1 N 3 ASP B 209 TRP B 212 0 SHEET 2 N 3 SER B 220 SER B 226 -1 O VAL B 225 N ASP B 209 SHEET 3 N 3 TRP B 234 GLN B 236 -1 O GLN B 236 N SER B 220 SHEET 1 O 3 ARG B 259 TRP B 262 0 SHEET 2 O 3 LEU B 269 SER B 272 -1 O ALA B 270 N SER B 261 SHEET 3 O 3 VAL B 278 TRP B 281 -1 O TRP B 281 N LEU B 269 CRYST1 155.163 155.163 59.866 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016704 0.00000