HEADER TRANSFERASE 23-APR-07 2PMN TITLE CRYSTAL STRUCTURE OF PFPK7 IN COMPLEX WITH AN ATP-SITE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SER/THR PROTEIN KINASE, PUTATIVE; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: PFB0605W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS SER/THR PROTEIN KINASE; PLASMODIUM FALCIPARUM; TRANSFERASE; KEYWDS 2 PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MERCKX,A.ECHALIER,M.NOBLE,J.ENDICOTT REVDAT 5 30-AUG-23 2PMN 1 REMARK SEQADV REVDAT 4 13-JUL-11 2PMN 1 VERSN REVDAT 3 24-FEB-09 2PMN 1 VERSN REVDAT 2 01-APR-08 2PMN 1 JRNL REVDAT 1 22-JAN-08 2PMN 0 JRNL AUTH A.MERCKX,A.ECHALIER,K.LANGFORD,A.SICARD,G.LANGSLEY,J.JOORE, JRNL AUTH 2 C.DOERIG,M.NOBLE,J.ENDICOTT JRNL TITL STRUCTURES OF P. FALCIPARUM PROTEIN KINASE 7 IDENTIFY AN JRNL TITL 2 ACTIVATION MOTIF AND LEADS FOR INHIBITOR DESIGN. JRNL REF STRUCTURE V. 16 228 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18275814 JRNL DOI 10.1016/J.STR.2007.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 9946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 499 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : -2.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.460 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.393 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2942 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3954 ; 1.309 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;38.250 ;24.863 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;19.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.543 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2182 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1440 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1977 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1743 ; 0.463 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2764 ; 0.839 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1372 ; 0.762 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1190 ; 1.240 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 340 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5200 -24.6600 -20.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.0352 REMARK 3 T33: -0.0520 T12: -0.0280 REMARK 3 T13: 0.0859 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.0570 L22: 3.8520 REMARK 3 L33: 3.6010 L12: -0.5240 REMARK 3 L13: 0.5371 L23: -1.4059 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: 0.2802 S13: 0.2164 REMARK 3 S21: -0.3629 S22: -0.1360 S23: -0.0109 REMARK 3 S31: -0.1207 S32: -0.0232 S33: -0.0569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PFPK7 IN COMPLEX WITH ATP ANALOGUE (2PML) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5; 20% PEG10K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.48100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.48100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.70300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.04200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.70300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.04200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.48100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.70300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.04200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.48100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.70300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.04200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN X 280 REMARK 465 LYS X 281 REMARK 465 LYS X 282 REMARK 465 SER X 283 REMARK 465 THR X 284 REMARK 465 CYS X 285 REMARK 465 SER X 286 REMARK 465 ASN X 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 20 -120.05 71.95 REMARK 500 ASP X 27 -8.96 76.03 REMARK 500 LYS X 38 -63.60 51.28 REMARK 500 PHE X 39 -107.29 -84.33 REMARK 500 ASN X 40 -99.87 4.11 REMARK 500 LYS X 41 116.00 86.25 REMARK 500 ASN X 49 18.36 58.35 REMARK 500 LYS X 70 121.15 61.53 REMARK 500 SER X 71 -158.32 -84.10 REMARK 500 ASP X 74 -12.46 69.08 REMARK 500 ASP X 111 -60.45 -134.23 REMARK 500 ASP X 123 -159.34 63.69 REMARK 500 ILE X 125 -56.90 -25.02 REMARK 500 GLU X 130 -38.68 65.73 REMARK 500 LEU X 135 -67.38 -121.33 REMARK 500 ARG X 171 -17.18 77.69 REMARK 500 LYS X 174 146.90 -170.02 REMARK 500 LYS X 182 0.77 -69.98 REMARK 500 ASP X 190 97.25 64.19 REMARK 500 SER X 205 82.75 54.66 REMARK 500 ARG X 206 137.49 -178.54 REMARK 500 SER X 218 -167.39 -112.82 REMARK 500 PRO X 246 -101.27 -48.80 REMARK 500 LEU X 249 62.56 -108.04 REMARK 500 LYS X 250 -132.35 39.41 REMARK 500 ILE X 251 -98.18 50.46 REMARK 500 ASN X 259 -74.71 -76.27 REMARK 500 ILE X 260 -69.68 -15.98 REMARK 500 PRO X 268 -149.51 -94.18 REMARK 500 ASP X 270 -59.45 -4.94 REMARK 500 LEU X 278 29.31 -168.32 REMARK 500 LEU X 302 61.81 -101.18 REMARK 500 LYS X 342 110.32 -177.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS X 341 LYS X 342 141.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K51 X 344 DBREF 2PMN X 1 343 UNP Q7YTF7 Q7YTF7_PLAF7 1 343 SEQADV 2PMN GLY X -4 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PMN PRO X -3 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PMN LEU X -2 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PMN GLY X -1 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PMN SER X 0 UNP Q7YTF7 EXPRESSION TAG SEQRES 1 X 348 GLY PRO LEU GLY SER MET LYS ASP ILE LEU SER ASN TYR SEQRES 2 X 348 SER ASN LEU ILE TYR LEU ASN LYS TYR VAL LYS GLU LYS SEQRES 3 X 348 ASP LYS TYR ILE ASN ASP TYR ARG ILE ILE ARG THR LEU SEQRES 4 X 348 ASN GLN GLY LYS PHE ASN LYS ILE ILE LEU CYS GLU LYS SEQRES 5 X 348 ASP ASN LYS PHE TYR ALA LEU LYS LYS TYR GLU LYS SER SEQRES 6 X 348 LEU LEU GLU LYS LYS ARG ASP PHE THR LYS SER ASN ASN SEQRES 7 X 348 ASP LYS ILE SER ILE LYS SER LYS TYR ASP ASP PHE LYS SEQRES 8 X 348 ASN GLU LEU GLN ILE ILE THR ASP ILE LYS ASN GLU TYR SEQRES 9 X 348 CYS LEU THR CYS GLU GLY ILE ILE THR ASN TYR ASP GLU SEQRES 10 X 348 VAL TYR ILE ILE TYR GLU TYR MET GLU ASN ASP SER ILE SEQRES 11 X 348 LEU LYS PHE ASP GLU TYR PHE PHE VAL LEU ASP LYS ASN SEQRES 12 X 348 TYR THR CYS PHE ILE PRO ILE GLN VAL ILE LYS CYS ILE SEQRES 13 X 348 ILE LYS SER VAL LEU ASN SER PHE SER TYR ILE HIS ASN SEQRES 14 X 348 GLU LYS ASN ILE CYS HIS ARG ASP VAL LYS PRO SER ASN SEQRES 15 X 348 ILE LEU MET ASP LYS ASN GLY ARG VAL LYS LEU SER ASP SEQRES 16 X 348 PHE GLY GLU SER GLU TYR MET VAL ASP LYS LYS ILE LYS SEQRES 17 X 348 GLY SER ARG GLY THR TYR GLU PHE MET PRO PRO GLU PHE SEQRES 18 X 348 PHE SER ASN GLU SER SER TYR ASN GLY ALA LYS VAL ASP SEQRES 19 X 348 ILE TRP SER LEU GLY ILE CYS LEU TYR VAL MET PHE TYR SEQRES 20 X 348 ASN VAL VAL PRO PHE SER LEU LYS ILE SER LEU VAL GLU SEQRES 21 X 348 LEU PHE ASN ASN ILE ARG THR LYS ASN ILE GLU TYR PRO SEQRES 22 X 348 LEU ASP ARG ASN HIS PHE LEU TYR PRO LEU THR ASN LYS SEQRES 23 X 348 LYS SER THR CYS SER ASN ASN PHE LEU SER ASN GLU ASP SEQRES 24 X 348 ILE ASP PHE LEU LYS LEU PHE LEU ARG LYS ASN PRO ALA SEQRES 25 X 348 GLU ARG ILE THR SER GLU ASP ALA LEU LYS HIS GLU TRP SEQRES 26 X 348 LEU ALA ASP THR ASN ILE GLU ASP LEU ARG GLU PHE SER SEQRES 27 X 348 LYS GLU LEU TYR LYS LYS ARG LYS LYS LEU HET K51 X 344 24 HETNAM K51 4-(6-{[(1S)-1-(HYDROXYMETHYL)-2- HETNAM 2 K51 METHYLPROPYL]AMINO}IMIDAZO[1,2-B]PYRIDAZIN-3-YL) HETNAM 3 K51 BENZONITRILE FORMUL 2 K51 C18 H19 N5 O FORMUL 3 HOH *55(H2 O) HELIX 1 1 SER X 0 SER X 6 1 7 HELIX 2 2 LYS X 59 GLU X 63 1 5 HELIX 3 3 LYS X 81 THR X 93 1 13 HELIX 4 4 PRO X 144 GLU X 165 1 22 HELIX 5 5 LYS X 174 SER X 176 5 3 HELIX 6 6 THR X 208 MET X 212 5 5 HELIX 7 7 PRO X 213 SER X 218 5 6 HELIX 8 8 GLY X 225 ASN X 243 1 19 HELIX 9 9 SER X 252 ARG X 261 1 10 HELIX 10 10 SER X 291 LEU X 302 1 12 HELIX 11 11 THR X 311 LYS X 317 1 7 HELIX 12 12 ASN X 325 LYS X 341 1 17 SHEET 1 A 8 LEU X 11 TYR X 13 0 SHEET 2 A 8 GLY X 105 THR X 108 1 O ILE X 106 N ILE X 12 SHEET 3 A 8 GLU X 112 GLU X 118 -1 O TYR X 114 N ILE X 107 SHEET 4 A 8 LYS X 50 GLU X 58 -1 N ALA X 53 O TYR X 117 SHEET 5 A 8 ILE X 42 LYS X 47 -1 N ILE X 43 O LEU X 54 SHEET 6 A 8 TYR X 28 ASN X 35 -1 N ARG X 32 O LEU X 44 SHEET 7 A 8 ASP X 22 ILE X 25 -1 N LYS X 23 O ILE X 30 SHEET 8 A 8 LYS X 16 LYS X 19 -1 N TYR X 17 O TYR X 24 SHEET 1 B 2 ARG X 66 PHE X 68 0 SHEET 2 B 2 ILE X 78 SER X 80 -1 O LYS X 79 N ASP X 67 SHEET 1 C 2 LYS X 127 PHE X 128 0 SHEET 2 C 2 PHE X 132 PHE X 133 -1 O PHE X 133 N LYS X 127 SHEET 1 D 2 ILE X 168 CYS X 169 0 SHEET 2 D 2 GLU X 195 TYR X 196 -1 O GLU X 195 N CYS X 169 SHEET 1 E 2 ILE X 178 MET X 180 0 SHEET 2 E 2 VAL X 186 LEU X 188 -1 O LYS X 187 N LEU X 179 SHEET 1 F 2 LYS X 201 LYS X 203 0 SHEET 2 F 2 SER X 222 ASN X 224 -1 O TYR X 223 N ILE X 202 CISPEP 1 ASN X 183 GLY X 184 0 -3.10 SITE 1 AC1 15 LEU X 34 ASN X 35 ALA X 53 LYS X 55 SITE 2 AC1 15 LEU X 101 TYR X 117 GLU X 118 TYR X 119 SITE 3 AC1 15 MET X 120 ASP X 123 SER X 176 LEU X 179 SITE 4 AC1 15 ASP X 190 HOH X 354 HOH X 387 CRYST1 73.406 82.084 138.962 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007196 0.00000