HEADER LYASE 23-APR-07 2PMP TITLE STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE FROM TITLE 2 THE ISOPRENOID BIOSYNTHETIC PATHWAY OF ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISPF; COMPND 5 SYNONYM: MECPS, MECDP-SYNTHASE; COMPND 6 EC: 4.6.1.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: ECOTYPE COLUMBIA 0; SOURCE 6 GENE: ISPF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) [PLYSS]; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS PLANT ENZYMES, ARABIDOPSIS THALIANA, MEP PATHWAY, ISOPRENOID-BINDING KEYWDS 2 PROTEINS, CMP, ZINC IONS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.M.CALISTO,J.PEREZ-GIL,J.QUEROL-AUDI,I.FITA,S.IMPERIAL REVDAT 5 30-AUG-23 2PMP 1 REMARK REVDAT 4 18-OCT-17 2PMP 1 REMARK REVDAT 3 13-JUL-11 2PMP 1 VERSN REVDAT 2 24-FEB-09 2PMP 1 VERSN REVDAT 1 18-SEP-07 2PMP 0 JRNL AUTH B.M.CALISTO,J.PEREZ-GIL,M.BERGUA,J.QUEROL-AUDI,I.FITA, JRNL AUTH 2 S.IMPERIAL JRNL TITL BIOSYNTHESIS OF ISOPRENOIDS IN PLANTS: STRUCTURE OF THE JRNL TITL 2 2C-METHYL-D-ERITHRYTOL 2,4-CYCLODIPHOSPHATE SYNTHASE FROM JRNL TITL 3 ARABIDOPSIS THALIANA. COMPARISON WITH THE BACTERIAL ENZYMES. JRNL REF PROTEIN SCI. V. 16 2082 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17660251 JRNL DOI 10.1110/PS.072972807 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 9150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 602 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 4.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1271 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 863 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1726 ; 1.507 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2123 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 159 ; 8.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;38.170 ;23.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;16.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.949 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 199 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1377 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 230 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 237 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 849 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 597 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 681 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 54 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.101 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.260 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1038 ; 1.232 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 324 ; 0.136 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1282 ; 1.356 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 531 ; 1.841 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 444 ; 2.662 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0358 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9624 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 100MM MES, 200MM AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.89750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.89750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 67.89750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 67.89750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 67.89750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 67.89750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 101.84625 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 33.94875 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 101.84625 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 101.84625 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 33.94875 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 101.84625 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 33.94875 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 33.94875 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 33.94875 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 33.94875 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 101.84625 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 33.94875 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 101.84625 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 101.84625 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 33.94875 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 101.84625 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 101.84625 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 33.94875 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 33.94875 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 33.94875 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 33.94875 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 101.84625 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 101.84625 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 101.84625 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 67.89750 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 67.89750 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 67.89750 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 67.89750 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 67.89750 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 67.89750 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 67.89750 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 67.89750 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 67.89750 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 33.94875 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 101.84625 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 33.94875 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 33.94875 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 101.84625 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 33.94875 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 101.84625 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 101.84625 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 101.84625 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 101.84625 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 33.94875 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 101.84625 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 33.94875 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 33.94875 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 101.84625 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 33.94875 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 33.94875 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 101.84625 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 101.84625 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 101.84625 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 33.94875 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 101.84625 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 33.94875 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 101.84625 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 33.94875 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 33.94875 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 33.94875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Z, X, Y AND Y, Z, REMARK 300 X. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 30 149.65 -172.24 REMARK 500 SER A 38 -173.14 -63.29 REMARK 500 SER A 67 117.21 151.63 REMARK 500 LYS A 70 15.34 -154.65 REMARK 500 TRP A 71 -143.61 -101.73 REMARK 500 LYS A 72 -53.50 95.79 REMARK 500 ASP A 141 -174.69 60.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 68 PRO A 69 120.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 HIS A 13 NE2 94.3 REMARK 620 3 HIS A 45 ND1 100.1 99.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GX1 RELATED DB: PDB REMARK 900 HOMOLOGUE PROTEIN REMARK 900 RELATED ID: 1IV1 RELATED DB: PDB REMARK 900 HOMOLOGUE PROTEIN REMARK 900 RELATED ID: 1JN1 RELATED DB: PDB REMARK 900 HOMOLOGUE PROTEIN DBREF 2PMP A 1 160 UNP Q9CAK8 ISPF_ARATH 72 231 SEQRES 1 A 160 THR LEU PRO PHE ARG ILE GLY HIS GLY PHE ASP LEU HIS SEQRES 2 A 160 ARG LEU GLU PRO GLY TYR PRO LEU ILE ILE GLY GLY ILE SEQRES 3 A 160 VAL ILE PRO HIS ASP ARG GLY CYS GLU ALA HIS SER ASP SEQRES 4 A 160 GLY ASP VAL LEU LEU HIS CYS VAL VAL ASP ALA ILE LEU SEQRES 5 A 160 GLY ALA LEU GLY LEU PRO ASP ILE GLY GLN ILE PHE PRO SEQRES 6 A 160 ASP SER ASP PRO LYS TRP LYS GLY ALA ALA SER SER VAL SEQRES 7 A 160 PHE ILE LYS GLU ALA VAL ARG LEU MET ASP GLU ALA GLY SEQRES 8 A 160 TYR GLU ILE GLY ASN LEU ASP ALA THR LEU ILE LEU GLN SEQRES 9 A 160 ARG PRO LYS ILE SER PRO HIS LYS GLU THR ILE ARG SER SEQRES 10 A 160 ASN LEU SER LYS LEU LEU GLY ALA ASP PRO SER VAL VAL SEQRES 11 A 160 ASN LEU LYS ALA LYS THR HIS GLU LYS VAL ASP SER LEU SEQRES 12 A 160 GLY GLU ASN ARG SER ILE ALA ALA HIS THR VAL ILE LEU SEQRES 13 A 160 LEU MET LYS LYS HET ZN A 500 1 HET PO4 A 701 5 HET CL A 702 1 HET C5P A 700 21 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 CL CL 1- FORMUL 5 C5P C9 H14 N3 O8 P FORMUL 6 HOH *68(H2 O) HELIX 1 1 ASP A 41 GLY A 56 1 16 HELIX 2 2 ASP A 59 PHE A 64 1 6 HELIX 3 3 ALA A 75 GLY A 91 1 17 HELIX 4 4 ILE A 108 PRO A 110 5 3 HELIX 5 5 HIS A 111 GLY A 124 1 14 HELIX 6 6 ASP A 126 SER A 128 5 3 HELIX 7 7 VAL A 140 GLU A 145 1 6 SHEET 1 A 5 ARG A 32 CYS A 34 0 SHEET 2 A 5 PHE A 4 PRO A 17 -1 N GLU A 16 O GLY A 33 SHEET 3 A 5 SER A 148 LYS A 159 -1 O LEU A 157 N ARG A 5 SHEET 4 A 5 TYR A 92 ILE A 102 -1 N THR A 100 O HIS A 152 SHEET 5 A 5 VAL A 130 LYS A 135 1 O LYS A 133 N LEU A 101 SHEET 1 B 2 ILE A 22 ILE A 23 0 SHEET 2 B 2 ILE A 26 VAL A 27 -1 O ILE A 26 N ILE A 23 LINK OD2 ASP A 11 ZN ZN A 500 1555 1555 2.03 LINK NE2 HIS A 13 ZN ZN A 500 1555 1555 2.29 LINK ND1 HIS A 45 ZN ZN A 500 1555 1555 2.03 CISPEP 1 ARG A 105 PRO A 106 0 -4.95 SITE 1 AC1 4 ASP A 11 HIS A 13 HIS A 45 HOH A 704 SITE 1 AC2 4 ASP A 141 LEU A 143 HOH A 749 HOH A 757 SITE 1 AC3 2 GLN A 104 ARG A 105 SITE 1 AC4 14 ASP A 59 ILE A 60 GLY A 61 LEU A 103 SITE 2 AC4 14 PRO A 106 LYS A 107 ILE A 108 SER A 109 SITE 3 AC4 14 ALA A 134 LYS A 135 THR A 136 HOH A 748 SITE 4 AC4 14 HOH A 765 HOH A 766 CRYST1 135.795 135.795 135.795 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007364 0.00000