HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-APR-07 2PMY TITLE EF-HAND DOMAIN OF HUMAN RASEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS AND EF-HAND DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EF-HAND DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 GENE: RASEF, RP11-158H18.1-001; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON(+)RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28MHL(TEV) KEYWDS RASEF, EFH, CALCIUM-BINDING DOMAIN, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHU,Y.SHEN,J.WANG,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 21-FEB-24 2PMY 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2PMY 1 REMARK REVDAT 2 24-FEB-09 2PMY 1 VERSN REVDAT 1 08-MAY-07 2PMY 0 JRNL AUTH H.ZHU,Y.SHEN,J.WANG,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL EF-HAND DOMAIN OF HUMAN RASEF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.432 REMARK 3 FREE R VALUE TEST SET COUNT : 494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 612 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35400 REMARK 3 B22 (A**2) : 0.35400 REMARK 3 B33 (A**2) : -0.70800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1120 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 793 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1503 ; 1.235 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1883 ; 4.306 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 4.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;25.005 ;22.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;12.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 161 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1308 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 269 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 294 ; 0.313 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 751 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 581 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 528 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 16 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 19 ; 0.290 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.356 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 715 ; 2.377 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 298 ; 0.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1116 ; 3.685 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 405 ; 2.542 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 387 ; 3.757 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESOLVE, ARP/WARP, COOT, MOLPROBITY PROGRAMS WERE REMARK 3 ALSO USED IN REFINEMENT. REMARK 4 REMARK 4 2PMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.11, RESOLVE 2.11 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CACODYLATE, 0.01M MAGNESIUM CHLORIDE, PH 5.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.79900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.62950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.62950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.19850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.62950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.62950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.39950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.62950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.62950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.19850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.62950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.62950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.39950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.79900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.79900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 30.62950 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -30.62950 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -25.39950 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 30.62950 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -30.62950 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 76.19850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLU A -4 REMARK 465 ASN A -3 REMARK 465 LEU A -2 REMARK 465 TYR A -1 REMARK 465 PHE A 0 REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 MET B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 ARG B -5 REMARK 465 GLU B -4 REMARK 465 ASN B -3 REMARK 465 LEU B -2 REMARK 465 TYR B -1 REMARK 465 PHE B 0 REMARK 465 GLN B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CD OE1 OE2 REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 GLN A 52 OE1 NE2 REMARK 470 ARG B 24 NE CZ NH1 NH2 REMARK 470 ARG B 27 CZ NH1 NH2 REMARK 470 ARG B 30 CZ NH1 NH2 REMARK 470 GLU B 31 CD OE1 OE2 REMARK 470 ARG B 41 NE CZ NH1 NH2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 37 UNK UNX B 204 2.02 REMARK 500 SG CYS B 20 UNK UNX B 203 2.04 REMARK 500 SG CYS A 37 UNK UNX A 202 2.08 REMARK 500 SG CYS A 20 UNK UNX A 201 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASN A 23 OD1 86.2 REMARK 620 3 SER A 25 OG 102.7 87.9 REMARK 620 4 ARG A 27 O 86.9 163.7 79.2 REMARK 620 5 GLU A 29 OE1 178.6 92.6 76.6 94.1 REMARK 620 6 GLU A 32 OE1 96.1 105.2 157.8 90.3 84.9 REMARK 620 7 GLU A 32 OE2 88.3 66.5 151.5 128.1 91.8 39.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 ASP A 57 OD1 84.8 REMARK 620 3 ASP A 59 OD1 92.6 77.9 REMARK 620 4 ALA A 61 O 94.0 159.3 81.5 REMARK 620 5 GLU A 66 OE1 101.8 119.3 158.3 81.3 REMARK 620 6 GLU A 66 OE2 94.1 68.6 145.0 132.1 50.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 21 OD1 REMARK 620 2 ASN B 23 OD1 87.6 REMARK 620 3 SER B 25 OG 99.5 89.1 REMARK 620 4 ARG B 27 O 87.9 168.7 81.4 REMARK 620 5 GLU B 29 OE2 176.6 89.5 82.2 95.2 REMARK 620 6 GLU B 29 OE1 140.7 106.0 45.6 71.5 42.1 REMARK 620 7 GLU B 32 OE2 97.4 98.3 161.8 92.5 81.3 116.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 55 OD1 REMARK 620 2 ASP B 57 OD2 93.8 REMARK 620 3 ASP B 59 OD1 83.1 78.4 REMARK 620 4 ALA B 61 O 82.3 156.7 78.4 REMARK 620 5 GLU B 66 OE1 105.6 118.6 159.5 84.4 REMARK 620 6 GLU B 66 OE2 97.5 70.5 148.9 132.7 49.8 REMARK 620 7 HOH B 209 O 165.6 83.8 82.5 94.3 87.9 95.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 204 DBREF 2PMY A 3 75 UNP Q8IZ41 Q8IZ41_HUMAN 3 75 DBREF 2PMY B 3 75 UNP Q8IZ41 Q8IZ41_HUMAN 3 75 SEQADV 2PMY MET A -15 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS A -14 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS A -13 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS A -12 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS A -11 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS A -10 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS A -9 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY SER A -8 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY SER A -7 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLY A -6 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY ARG A -5 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLU A -4 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY ASN A -3 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY LEU A -2 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY TYR A -1 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY PHE A 0 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLN A 1 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLY A 2 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY MET B -15 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS B -14 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS B -13 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS B -12 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS B -11 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS B -10 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY HIS B -9 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY SER B -8 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY SER B -7 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLY B -6 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY ARG B -5 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLU B -4 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY ASN B -3 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY LEU B -2 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY TYR B -1 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY PHE B 0 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLN B 1 UNP Q8IZ41 CLONING ARTIFACT SEQADV 2PMY GLY B 2 UNP Q8IZ41 CLONING ARTIFACT SEQRES 1 A 91 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 91 LEU TYR PHE GLN GLY ALA ASP GLY ASP GLY GLU GLU LEU SEQRES 3 A 91 ALA ARG LEU ARG SER VAL PHE ALA ALA CYS ASP ALA ASN SEQRES 4 A 91 ARG SER GLY ARG LEU GLU ARG GLU GLU PHE ARG ALA LEU SEQRES 5 A 91 CYS THR GLU LEU ARG VAL ARG PRO ALA ASP ALA GLU ALA SEQRES 6 A 91 VAL PHE GLN ARG LEU ASP ALA ASP ARG ASP GLY ALA ILE SEQRES 7 A 91 THR PHE GLN GLU PHE ALA ARG GLY PHE LEU GLY SER LEU SEQRES 1 B 91 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 91 LEU TYR PHE GLN GLY ALA ASP GLY ASP GLY GLU GLU LEU SEQRES 3 B 91 ALA ARG LEU ARG SER VAL PHE ALA ALA CYS ASP ALA ASN SEQRES 4 B 91 ARG SER GLY ARG LEU GLU ARG GLU GLU PHE ARG ALA LEU SEQRES 5 B 91 CYS THR GLU LEU ARG VAL ARG PRO ALA ASP ALA GLU ALA SEQRES 6 B 91 VAL PHE GLN ARG LEU ASP ALA ASP ARG ASP GLY ALA ILE SEQRES 7 B 91 THR PHE GLN GLU PHE ALA ARG GLY PHE LEU GLY SER LEU HET CA A 102 1 HET CA A 103 1 HET SO4 A 105 5 HET UNX A 201 1 HET UNX A 202 1 HET CA B 101 1 HET CA B 104 1 HET UNX B 203 1 HET UNX B 204 1 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 CA 4(CA 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 UNX 4(X) FORMUL 12 HOH *15(H2 O) HELIX 1 1 ALA A 3 ASP A 21 1 19 HELIX 2 2 ARG A 30 LEU A 40 1 11 HELIX 3 3 ARG A 43 ASP A 55 1 13 HELIX 4 4 THR A 63 ALA A 68 1 6 HELIX 5 5 ALA A 68 SER A 74 1 7 HELIX 6 6 ASP B 4 ASP B 21 1 18 HELIX 7 7 ARG B 30 LEU B 40 1 11 HELIX 8 8 ARG B 43 ASP B 55 1 13 HELIX 9 9 THR B 63 ALA B 68 1 6 HELIX 10 10 ALA B 68 SER B 74 1 7 SHEET 1 A 2 LEU A 28 GLU A 29 0 SHEET 2 A 2 ALA A 61 ILE A 62 -1 O ILE A 62 N LEU A 28 SHEET 1 B 2 LEU B 28 GLU B 29 0 SHEET 2 B 2 ALA B 61 ILE B 62 -1 O ILE B 62 N LEU B 28 LINK OD1 ASP A 21 CA CA A 102 1555 1555 1.94 LINK OD1 ASN A 23 CA CA A 102 1555 1555 2.15 LINK OG SER A 25 CA CA A 102 1555 1555 2.50 LINK O ARG A 27 CA CA A 102 1555 1555 2.20 LINK OE1 GLU A 29 CA CA A 102 1555 1555 2.17 LINK OE1 GLU A 32 CA CA A 102 1555 1555 2.06 LINK OE2 GLU A 32 CA CA A 102 1555 1555 3.35 LINK OD1 ASP A 55 CA CA A 103 1555 1555 2.30 LINK OD1 ASP A 57 CA CA A 103 1555 1555 2.31 LINK OD1 ASP A 59 CA CA A 103 1555 1555 2.13 LINK O ALA A 61 CA CA A 103 1555 1555 2.35 LINK OE1 GLU A 66 CA CA A 103 1555 1555 2.54 LINK OE2 GLU A 66 CA CA A 103 1555 1555 2.52 LINK OD1 ASP B 21 CA CA B 101 1555 1555 2.00 LINK OD1 ASN B 23 CA CA B 101 1555 1555 2.18 LINK OG SER B 25 CA CA B 101 1555 1555 2.07 LINK O ARG B 27 CA CA B 101 1555 1555 2.16 LINK OE2 GLU B 29 CA CA B 101 1555 1555 2.13 LINK OE1 GLU B 29 CA CA B 101 1555 1555 3.25 LINK OE2 GLU B 32 CA CA B 101 1555 1555 1.86 LINK OD1 ASP B 55 CA CA B 104 1555 1555 2.18 LINK OD2 ASP B 57 CA CA B 104 1555 1555 2.43 LINK OD1 ASP B 59 CA CA B 104 1555 1555 2.30 LINK O ALA B 61 CA CA B 104 1555 1555 2.27 LINK OE1 GLU B 66 CA CA B 104 1555 1555 2.48 LINK OE2 GLU B 66 CA CA B 104 1555 1555 2.72 LINK CA CA B 104 O HOH B 209 1555 1555 2.36 SITE 1 AC1 6 ASP B 21 ASN B 23 SER B 25 ARG B 27 SITE 2 AC1 6 GLU B 29 GLU B 32 SITE 1 AC2 6 ASP A 21 ASN A 23 SER A 25 ARG A 27 SITE 2 AC2 6 GLU A 29 GLU A 32 SITE 1 AC3 5 ASP A 55 ASP A 57 ASP A 59 ALA A 61 SITE 2 AC3 5 GLU A 66 SITE 1 AC4 6 ASP B 55 ASP B 57 ASP B 59 ALA B 61 SITE 2 AC4 6 GLU B 66 HOH B 209 SITE 1 AC5 6 ARG A 27 ARG A 41 THR A 63 HOH A 203 SITE 2 AC5 6 ARG B 53 ARG B 69 SITE 1 AC6 1 CYS A 20 SITE 1 AC7 1 CYS A 37 SITE 1 AC8 1 CYS B 20 SITE 1 AC9 1 CYS B 37 CRYST1 61.259 61.259 101.598 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009840 0.00000