HEADER LIGASE 23-APR-07 2PN1 TITLE CRYSTAL STRUCTURE OF CARBAMOYLPHOSPHATE SYNTHASE LARGE SUBUNIT (SPLIT TITLE 2 GENE IN MJ) (ZP_00538348.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 2.00 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAMOYLPHOSPHATE SYNTHASE LARGE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATP-GRASP DOMAIN; COMPND 5 SYNONYM: SPLIT GENE IN MJ; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SIBIRICUM; SOURCE 3 ORGANISM_TAXID: 262543; SOURCE 4 STRAIN: 255-15; SOURCE 5 GENE: ZP_00538348.1, EXIGDRAFT_2250; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ZP_00538348.1, ATP-GRASP DOMAIN, CARBAMOYLPHOSPHATE SYNTHASE LARGE KEYWDS 2 SUBUNIT (SPLIT GENE IN MJ), STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2PN1 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2PN1 1 REMARK REVDAT 4 18-OCT-17 2PN1 1 REMARK REVDAT 3 13-JUL-11 2PN1 1 VERSN REVDAT 2 24-FEB-09 2PN1 1 VERSN REVDAT 1 08-MAY-07 2PN1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CARBAMOYLPHOSPHATE SYNTHASE LARGE JRNL TITL 2 SUBUNIT (SPLIT GENE IN MJ) (ZP_00538348.1) FROM JRNL TITL 3 EXIGUOBACTERIUM SP. 255-15 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2468 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1632 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3357 ; 1.622 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4003 ; 1.306 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 3.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;34.793 ;24.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;10.878 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;10.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 439 ; 0.168 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1608 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1190 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1266 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.121 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.086 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 1.562 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 630 ; 0.368 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2494 ; 2.351 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 4.548 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 858 ; 6.094 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 158 REMARK 3 RESIDUE RANGE : A 182 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3650 39.0300 46.1180 REMARK 3 T TENSOR REMARK 3 T11: -0.0665 T22: -0.0425 REMARK 3 T33: -0.0340 T12: 0.0007 REMARK 3 T13: 0.0033 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8101 L22: 0.5288 REMARK 3 L33: 1.1110 L12: -0.1356 REMARK 3 L13: -0.0175 L23: -0.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0117 S13: 0.0877 REMARK 3 S21: -0.0241 S22: 0.0375 S23: -0.0051 REMARK 3 S31: -0.0866 S32: -0.0575 S33: -0.0361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 159-181 ARE DISORDERED AND ARE NOT INCLUDED IN THE REMARK 3 MODEL. REMARK 3 4. A GLYCEROL MOLECULE FROM THE CRYO SOLUTION IS MODELED. REMARK 3 5. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2PN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.587 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 24.0% PEG 8000, 0.25M SODIUM REMARK 280 CHLORIDE, 0.1M PHOSPHATE-CITRATE PH 4.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 5.57401 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 127.44280 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 159 REMARK 465 ALA A 160 REMARK 465 SER A 161 REMARK 465 ILE A 162 REMARK 465 GLU A 163 REMARK 465 VAL A 164 REMARK 465 ARG A 165 REMARK 465 ARG A 166 REMARK 465 VAL A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 VAL A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 VAL A 173 REMARK 465 GLU A 174 REMARK 465 GLN A 175 REMARK 465 LEU A 176 REMARK 465 PHE A 177 REMARK 465 SER A 178 REMARK 465 LYS A 179 REMARK 465 ASN A 180 REMARK 465 THR A 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 470 LEU A 149 CG CD1 CD2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 GLN A 326 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 304 68.96 -100.64 REMARK 500 ILE A 328 -114.38 -122.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 369798 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2PN1 A 1 330 UNP Q41GJ8 Q41GJ8_9BACI 1 330 SEQADV 2PN1 GLY A 0 UNP Q41GJ8 EXPRESSION TAG SEQADV 2PN1 MSE A 1 UNP Q41GJ8 MET 1 MODIFIED RESIDUE SEQADV 2PN1 MSE A 44 UNP Q41GJ8 MET 44 MODIFIED RESIDUE SEQADV 2PN1 MSE A 117 UNP Q41GJ8 MET 117 MODIFIED RESIDUE SEQADV 2PN1 MSE A 135 UNP Q41GJ8 MET 135 MODIFIED RESIDUE SEQADV 2PN1 MSE A 218 UNP Q41GJ8 MET 218 MODIFIED RESIDUE SEQADV 2PN1 MSE A 294 UNP Q41GJ8 MET 294 MODIFIED RESIDUE SEQADV 2PN1 MSE A 311 UNP Q41GJ8 MET 311 MODIFIED RESIDUE SEQRES 1 A 331 GLY MSE GLN LYS PRO HIS LEU LEU ILE THR SER ALA GLY SEQRES 2 A 331 ARG ARG ALA LYS LEU VAL GLU TYR PHE VAL LYS GLU PHE SEQRES 3 A 331 LYS THR GLY ARG VAL SER THR ALA ASP CYS SER PRO LEU SEQRES 4 A 331 ALA SER ALA LEU TYR MSE ALA ASP GLN HIS TYR ILE VAL SEQRES 5 A 331 PRO LYS ILE ASP GLU VAL GLU TYR ILE ASP HIS LEU LEU SEQRES 6 A 331 THR LEU CYS GLN ASP GLU GLY VAL THR ALA LEU LEU THR SEQRES 7 A 331 LEU ILE ASP PRO GLU LEU GLY LEU LEU ALA GLN ALA THR SEQRES 8 A 331 GLU ARG PHE GLN ALA ILE GLY VAL THR VAL ILE VAL SER SEQRES 9 A 331 PRO TYR ALA ALA CYS GLU LEU CYS PHE ASP LYS TYR THR SEQRES 10 A 331 MSE TYR GLU TYR CYS LEU ARG GLN GLY ILE ALA HIS ALA SEQRES 11 A 331 ARG THR TYR ALA THR MSE ALA SER PHE GLU GLU ALA LEU SEQRES 12 A 331 ALA ALA GLY GLU VAL GLN LEU PRO VAL PHE VAL LYS PRO SEQRES 13 A 331 ARG ASN GLY SER ALA SER ILE GLU VAL ARG ARG VAL GLU SEQRES 14 A 331 THR VAL GLU GLU VAL GLU GLN LEU PHE SER LYS ASN THR SEQRES 15 A 331 ASP LEU ILE VAL GLN GLU LEU LEU VAL GLY GLN GLU LEU SEQRES 16 A 331 GLY VAL ASP ALA TYR VAL ASP LEU ILE SER GLY LYS VAL SEQRES 17 A 331 THR SER ILE PHE ILE LYS GLU LYS LEU THR MSE ARG ALA SEQRES 18 A 331 GLY GLU THR ASP LYS SER ARG SER VAL LEU ARG ASP ASP SEQRES 19 A 331 VAL PHE GLU LEU VAL GLU HIS VAL LEU ASP GLY SER GLY SEQRES 20 A 331 LEU VAL GLY PRO LEU ASP PHE ASP LEU PHE ASP VAL ALA SEQRES 21 A 331 GLY THR LEU TYR LEU SER GLU ILE ASN PRO ARG PHE GLY SEQRES 22 A 331 GLY GLY TYR PRO HIS ALA TYR GLU CYS GLY VAL ASN PHE SEQRES 23 A 331 PRO ALA GLN LEU TYR ARG ASN LEU MSE HIS GLU ILE ASN SEQRES 24 A 331 VAL PRO GLN ILE GLY GLN TYR LEU ASP ASP ILE TYR MSE SEQRES 25 A 331 LEU LYS HIS ASP THR VAL THR LEU ILE SER ALA ALA GLU SEQRES 26 A 331 LEU GLN LYS ILE LYS ARG MODRES 2PN1 MSE A 1 MET SELENOMETHIONINE MODRES 2PN1 MSE A 44 MET SELENOMETHIONINE MODRES 2PN1 MSE A 117 MET SELENOMETHIONINE MODRES 2PN1 MSE A 135 MET SELENOMETHIONINE MODRES 2PN1 MSE A 218 MET SELENOMETHIONINE MODRES 2PN1 MSE A 294 MET SELENOMETHIONINE MODRES 2PN1 MSE A 311 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 117 8 HET MSE A 135 8 HET MSE A 218 8 HET MSE A 294 8 HET MSE A 311 8 HET GOL A 331 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *165(H2 O) HELIX 1 1 ARG A 14 PHE A 25 1 12 HELIX 2 2 ALA A 39 ALA A 45 5 7 HELIX 3 3 GLU A 58 GLY A 71 1 14 HELIX 4 4 ILE A 79 ALA A 89 1 11 HELIX 5 5 ALA A 89 ALA A 95 1 7 HELIX 6 6 PRO A 104 ASP A 113 1 10 HELIX 7 7 ASP A 113 GLY A 125 1 13 HELIX 8 8 THR A 134 ALA A 144 1 11 HELIX 9 9 ARG A 231 ASP A 243 1 13 HELIX 10 10 GLY A 274 CYS A 281 1 8 HELIX 11 11 ASN A 284 MSE A 294 1 11 HELIX 12 12 SER A 321 GLN A 326 1 6 SHEET 1 A 5 HIS A 48 ILE A 50 0 SHEET 2 A 5 ARG A 29 ASP A 34 1 N THR A 32 O TYR A 49 SHEET 3 A 5 HIS A 5 THR A 9 1 N LEU A 6 O SER A 31 SHEET 4 A 5 ALA A 74 THR A 77 1 O ALA A 74 N LEU A 7 SHEET 5 A 5 THR A 99 VAL A 100 1 O THR A 99 N LEU A 75 SHEET 1 B 3 THR A 131 TYR A 132 0 SHEET 2 B 3 LEU A 183 GLU A 187 -1 O VAL A 185 N TYR A 132 SHEET 3 B 3 VAL A 151 PRO A 155 -1 N LYS A 154 O ILE A 184 SHEET 1 C 6 THR A 261 ASN A 268 0 SHEET 2 C 6 GLY A 249 VAL A 258 -1 N ASP A 252 O ASN A 268 SHEET 3 C 6 GLN A 192 VAL A 200 -1 N ALA A 198 O LEU A 251 SHEET 4 C 6 VAL A 207 ARG A 219 -1 O PHE A 211 N ASP A 197 SHEET 5 C 6 GLU A 222 VAL A 229 -1 O ARG A 227 N GLU A 214 SHEET 6 C 6 TYR A 310 LEU A 312 -1 O MSE A 311 N SER A 226 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C TYR A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N ALA A 45 1555 1555 1.34 LINK C THR A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N TYR A 118 1555 1555 1.34 LINK C THR A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N ALA A 136 1555 1555 1.34 LINK C THR A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N ARG A 219 1555 1555 1.33 LINK C LEU A 293 N MSE A 294 1555 1555 1.34 LINK C MSE A 294 N HIS A 295 1555 1555 1.34 LINK C TYR A 310 N MSE A 311 1555 1555 1.33 LINK C MSE A 311 N LEU A 312 1555 1555 1.34 SITE 1 AC1 7 GLU A 222 ASP A 252 ASN A 268 ARG A 270 SITE 2 AC1 7 GLY A 273 GLY A 274 HOH A 461 CRYST1 91.600 61.210 76.880 90.00 124.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010920 0.000000 0.007370 0.00000 SCALE2 0.000000 0.016340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015690 0.00000