data_2PN4 # _entry.id 2PN4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PN4 pdb_00002pn4 10.2210/pdb2pn4/pdb NDB AR0078 ? ? RCSB RCSB042561 ? ? WWPDB D_1000042561 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PN4 _pdbx_database_status.recvd_initial_deposition_date 2007-04-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, Q.' 1 'Han, Q.' 2 'Kissinger, C.R.' 3 'Thompson, P.A.' 4 # _citation.id primary _citation.title 'Structure of hepatitis C virus IRES subdomain IIa.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 64 _citation.page_first 436 _citation.page_last 443 _citation.year 2008 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18391410 _citation.pdbx_database_id_DOI 10.1107/S0907444908002011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, Q.' 1 ? primary 'Han, Q.' 2 ? primary 'Kissinger, C.R.' 3 ? primary 'Hermann, T.' 4 ? primary 'Thompson, P.A.' 5 ? # _cell.entry_id 2PN4 _cell.length_a 48.286 _cell.length_b 48.730 _cell.length_c 119.999 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PN4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3'" 7644.589 2 ? G47C,U48G,A70C 'HCV IRES Subdomain IIa (residue 47-70)' ? 2 polymer syn "5'-R(*GP*CP*GP*(5BU)P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3'" 6564.623 2 ? A99C,A116G 'HCV IRES Subdomain IIa (residue 98-117)' ? 3 non-polymer syn 'STRONTIUM ION' 87.620 10 ? ? ? ? 4 water nat water 18.015 67 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGGAGGAACUACUGUCUUCACGCC CGGAGGAACUACUGUCUUCACGCC A,C ? 2 polyribonucleotide no yes 'GCG(5BU)GUCGUGCAGCC(5BU)CCGG' GCGUGUCGUGCAGCCUCCGG B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 G n 1 7 A n 1 8 A n 1 9 C n 1 10 U n 1 11 A n 1 12 C n 1 13 U n 1 14 G n 1 15 U n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 A n 1 21 C n 1 22 G n 1 23 C n 1 24 C n 2 1 G n 2 2 C n 2 3 G n 2 4 5BU n 2 5 G n 2 6 U n 2 7 C n 2 8 G n 2 9 U n 2 10 G n 2 11 C n 2 12 A n 2 13 G n 2 14 C n 2 15 C n 2 16 5BU n 2 17 C n 2 18 C n 2 19 G n 2 20 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence of RNA naturally exists in hepatitis C virus' 2 1 sample ? ? ? ? ? 'This sequence of RNA naturally exists in hepatitis C virus' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2PN4 2PN4 1 ? CGGAGGAACUACUGUCUUCACGCC ? 2 PDB 2PN4 2PN4 2 ? GCGUGUCGUGCAGCCUCCGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PN4 A 1 ? 24 ? 2PN4 47 ? 70 ? 47 70 2 1 2PN4 C 1 ? 24 ? 2PN4 47 ? 70 ? 47 70 3 2 2PN4 B 1 ? 20 ? 2PN4 98 ? 117 ? 98 117 4 2 2PN4 D 1 ? 20 ? 2PN4 98 ? 117 ? 98 117 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2PN4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 290.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '30% MPD, 80mM SrCl2, 25mM NaCl, 50mM Cacodylate equilibrated with 60%MPD, pH 6.2, EVAPORATION, temperature 290.0K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 '30% MPD' ? ? ? 1 2 1 SrCl2 ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 Cacodylate ? ? ? 1 5 2 60%MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-03-04 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 8-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 8-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 # _reflns.entry_id 2PN4 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.32 _reflns.d_resolution_low 59.98 _reflns.number_all 12751 _reflns.number_obs 12228 _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.5 _reflns.B_iso_Wilson_estimate 59.9 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.32 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.714 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1247 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PN4 _refine.ls_number_reflns_obs 11590 _refine.ls_number_reflns_all 12210 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 59.98 _refine.ls_d_res_high 2.32 _refine.ls_percent_reflns_obs 94.92 _refine.ls_R_factor_obs 0.26405 _refine.ls_R_factor_all 0.26515 _refine.ls_R_factor_R_work 0.26141 _refine.ls_R_factor_R_free 0.32037 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 598 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.909 _refine.correlation_coeff_Fo_to_Fc_free 0.872 _refine.B_iso_mean 51.272 _refine.aniso_B[1][1] -2.24 _refine.aniso_B[2][2] -0.38 _refine.aniso_B[3][3] 2.62 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'spare matrix least squares procedure' _refine.pdbx_starting_model 'PDB ENTRY 2PN3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.445 _refine.pdbx_overall_ESU_R_Free 0.314 _refine.overall_SU_ML 0.220 _refine.overall_SU_B 16.579 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PN4 _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.335 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1860 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1937 _refine_hist.d_res_high 2.32 _refine_hist.d_res_low 59.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 2072 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.835 3.000 ? 3224 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 436 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 904 'X-RAY DIFFRACTION' ? r_nbd_refined 0.165 0.200 ? 732 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.279 0.200 ? 1250 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.162 0.200 ? 94 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.222 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.164 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.317 0.200 ? 10 'X-RAY DIFFRACTION' ? r_scbond_it 1.409 3.000 ? 2562 'X-RAY DIFFRACTION' ? r_scangle_it 1.940 4.500 ? 3224 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.32 _refine_ls_shell.d_res_low 2.380 _refine_ls_shell.number_reflns_R_work 752 _refine_ls_shell.R_factor_R_work 0.301 _refine_ls_shell.percent_reflns_obs 86.03 _refine_ls_shell.R_factor_R_free 0.43 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1247 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PN4 _struct.title 'Crystal Structure of Hepatitis C Virus IRES Subdomain IIa' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PN4 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HCV, IRES, subdoamin IIa, RNA, Strontium, Hepatitis' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? # loop_ _struct_biol.id _struct_biol.details 1 ;The biological assembly is generated by applying the operation X, Y, Z to chains A, B or by applying the operation X, Y, Z to chains C, D. ; 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B G 3 "O3'" ? ? ? 1_555 B 5BU 4 P ? ? B G 100 B 5BU 101 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? B 5BU 4 "O3'" ? ? ? 1_555 B G 5 P ? ? B 5BU 101 B G 102 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale3 covale both ? B C 15 "O3'" ? ? ? 1_555 B 5BU 16 P ? ? B C 112 B 5BU 113 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale both ? B 5BU 16 "O3'" ? ? ? 1_555 B C 17 P ? ? B 5BU 113 B C 114 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale5 covale both ? D G 3 "O3'" ? ? ? 1_555 D 5BU 4 P ? ? D G 100 D 5BU 101 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale6 covale both ? D 5BU 4 "O3'" ? ? ? 1_555 D G 5 P ? ? D 5BU 101 D G 102 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale7 covale both ? D C 15 "O3'" ? ? ? 1_555 D 5BU 16 P ? ? D C 112 D 5BU 113 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale8 covale both ? D 5BU 16 "O3'" ? ? ? 1_555 D C 17 P ? ? D 5BU 113 D C 114 1_555 ? ? ? ? ? ? ? 1.591 ? ? metalc1 metalc ? ? A A 8 OP1 ? ? ? 1_555 H SR . SR ? ? A A 54 A SR 1027 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc2 metalc ? ? A C 9 O2 ? ? ? 1_555 E SR . SR ? ? A C 55 A SR 1001 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc3 metalc ? ? A G 14 O6 ? ? ? 1_555 F SR . SR ? ? A G 60 A SR 1002 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc4 metalc ? ? E SR . SR ? ? ? 1_555 O HOH . O ? ? A SR 1001 A HOH 1046 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc5 metalc ? ? E SR . SR ? ? ? 1_555 P HOH . O ? ? A SR 1001 B HOH 126 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc6 metalc ? ? F SR . SR ? ? ? 1_555 O HOH . O ? ? A SR 1002 A HOH 1038 1_555 ? ? ? ? ? ? ? 2.701 ? ? metalc7 metalc ? ? I SR . SR ? ? ? 1_555 O HOH . O ? ? A SR 1005 A HOH 1032 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc8 metalc ? ? I SR . SR ? ? ? 1_555 O HOH . O ? ? A SR 1005 A HOH 1045 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc9 metalc ? ? C A 8 OP1 ? ? ? 1_555 M SR . SR ? ? C A 54 C SR 1022 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc10 metalc ? ? C C 9 O2 ? ? ? 1_555 K SR . SR ? ? C C 55 C SR 1004 1_555 ? ? ? ? ? ? ? 2.554 ? ? metalc11 metalc ? ? C G 14 O6 ? ? ? 1_555 J SR . SR ? ? C G 60 C SR 1003 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc12 metalc ? ? J SR . SR ? ? ? 1_555 Q HOH . O ? ? C SR 1003 C HOH 1032 1_555 ? ? ? ? ? ? ? 2.714 ? ? metalc13 metalc ? ? N SR . SR ? ? ? 1_555 Q HOH . O ? ? C SR 1008 C HOH 1034 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc14 metalc ? ? L SR . SR ? ? ? 1_555 Q HOH . O ? ? C SR 1009 C HOH 1033 1_555 ? ? ? ? ? ? ? 2.691 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 47 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 47 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 47 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 48 B C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 48 B C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 48 B C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 B 5BU 16 N3 ? ? A A 50 B 5BU 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 B 5BU 16 O4 ? ? A A 50 B 5BU 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 59 B A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 59 B A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 15 N3 ? ? ? 1_555 B G 10 O6 ? ? A U 61 B G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A U 15 O2 ? ? ? 1_555 B G 10 N1 ? ? A U 61 B G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 17 N3 ? ? ? 1_555 B C 7 N3 ? ? A U 63 B C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog32 hydrog ? ? A U 17 O4 ? ? ? 1_555 B C 7 N4 ? ? A U 63 B C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog33 hydrog ? ? A U 18 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 64 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog34 hydrog ? ? A U 18 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 64 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog35 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 20 N1 ? ? ? 1_555 B 5BU 4 N3 ? ? A A 66 B 5BU 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 20 N6 ? ? ? 1_555 B 5BU 4 O4 ? ? A A 66 B 5BU 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 67 B G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 67 B G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 67 B G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 68 B C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 68 B C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 68 B C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 69 B G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 69 B G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 69 B G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 1 N3 ? ? ? 1_555 D G 19 N1 ? ? C C 47 D G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 1 N4 ? ? ? 1_555 D G 19 O6 ? ? C C 47 D G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 19 N2 ? ? C C 47 D G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 18 N3 ? ? C G 48 D C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 18 O2 ? ? C G 48 D C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 18 N4 ? ? C G 48 D C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 17 N3 ? ? C G 49 D C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 17 O2 ? ? C G 49 D C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 17 N4 ? ? C G 49 D C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C A 4 N1 ? ? ? 1_555 D 5BU 16 N3 ? ? C A 50 D 5BU 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C A 4 N6 ? ? ? 1_555 D 5BU 16 O4 ? ? C A 50 D 5BU 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 51 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 51 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 51 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 14 N3 ? ? C G 52 D C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 14 O2 ? ? C G 52 D C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 14 N4 ? ? C G 52 D C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 13 N1 ? ? C C 58 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 13 O6 ? ? C C 58 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 13 N2 ? ? C C 58 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C U 13 N3 ? ? ? 1_555 D A 12 N1 ? ? C U 59 D A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C U 13 O4 ? ? ? 1_555 D A 12 N6 ? ? C U 59 D A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 14 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 60 D C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 14 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 60 D C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 14 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 60 D C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C U 15 N3 ? ? ? 1_555 D G 10 O6 ? ? C U 61 D G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog75 hydrog ? ? C U 15 O2 ? ? ? 1_555 D G 10 N1 ? ? C U 61 D G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? C C 16 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 62 D G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C C 16 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 62 D G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C C 16 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 62 D G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C U 17 N3 ? ? ? 1_555 D C 7 N3 ? ? C U 63 D C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog80 hydrog ? ? C U 17 O4 ? ? ? 1_555 D C 7 N4 ? ? C U 63 D C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog81 hydrog ? ? C U 18 N3 ? ? ? 1_555 D U 6 O2 ? ? C U 64 D U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog82 hydrog ? ? C U 18 O4 ? ? ? 1_555 D U 6 N3 ? ? C U 64 D U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog83 hydrog ? ? C C 19 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 65 D G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C C 19 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 65 D G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 19 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 65 D G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C A 20 N1 ? ? ? 1_555 D 5BU 4 N3 ? ? C A 66 D 5BU 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C A 20 N6 ? ? ? 1_555 D 5BU 4 O4 ? ? C A 66 D 5BU 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 67 D G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 67 D G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 67 D G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C G 22 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 68 D C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C G 22 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 68 D C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C G 22 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 68 D C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C C 23 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 69 D G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C C 23 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 69 D G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C C 23 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 69 D G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SR 1001 ? 2 'BINDING SITE FOR RESIDUE SR A 1001' AC2 Software A SR 1002 ? 1 'BINDING SITE FOR RESIDUE SR A 1002' AC3 Software C SR 1003 ? 1 'BINDING SITE FOR RESIDUE SR C 1003' AC4 Software C SR 1022 ? 1 'BINDING SITE FOR RESIDUE SR C 1022' AC5 Software A SR 1027 ? 1 'BINDING SITE FOR RESIDUE SR A 1027' AC6 Software A SR 1005 ? 2 'BINDING SITE FOR RESIDUE SR A 1005' AC7 Software C SR 1008 ? 2 'BINDING SITE FOR RESIDUE SR C 1008' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HOH O . ? HOH A 1046 . ? 1_555 ? 2 AC1 2 HOH P . ? HOH B 126 . ? 1_555 ? 3 AC2 1 HOH O . ? HOH A 1038 . ? 1_555 ? 4 AC3 1 HOH Q . ? HOH C 1032 . ? 1_555 ? 5 AC4 1 HOH O . ? HOH A 1035 . ? 1_555 ? 6 AC5 1 HOH O . ? HOH A 1036 . ? 1_555 ? 7 AC6 2 HOH O . ? HOH A 1032 . ? 1_555 ? 8 AC6 2 HOH O . ? HOH A 1045 . ? 1_555 ? 9 AC7 2 HOH Q . ? HOH C 1028 . ? 1_555 ? 10 AC7 2 HOH Q . ? HOH C 1034 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PN4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PN4 _atom_sites.fract_transf_matrix[1][1] 0.020710 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020521 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008333 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P SR # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 47 47 C C A . n A 1 2 G 2 48 48 G G A . n A 1 3 G 3 49 49 G G A . n A 1 4 A 4 50 50 A A A . n A 1 5 G 5 51 51 G G A . n A 1 6 G 6 52 52 G G A . n A 1 7 A 7 53 53 A A A . n A 1 8 A 8 54 54 A A A . n A 1 9 C 9 55 55 C C A . n A 1 10 U 10 56 56 U U A . n A 1 11 A 11 57 57 A A A . n A 1 12 C 12 58 58 C C A . n A 1 13 U 13 59 59 U U A . n A 1 14 G 14 60 60 G G A . n A 1 15 U 15 61 61 U U A . n A 1 16 C 16 62 62 C C A . n A 1 17 U 17 63 63 U U A . n A 1 18 U 18 64 64 U U A . n A 1 19 C 19 65 65 C C A . n A 1 20 A 20 66 66 A A A . n A 1 21 C 21 67 67 C C A . n A 1 22 G 22 68 68 G G A . n A 1 23 C 23 69 69 C C A . n A 1 24 C 24 70 70 C C A . n B 2 1 G 1 98 98 G G B . n B 2 2 C 2 99 99 C C B . n B 2 3 G 3 100 100 G G B . n B 2 4 5BU 4 101 101 5BU 5BU B . n B 2 5 G 5 102 102 G G B . n B 2 6 U 6 103 103 U U B . n B 2 7 C 7 104 104 C C B . n B 2 8 G 8 105 105 G G B . n B 2 9 U 9 106 106 U U B . n B 2 10 G 10 107 107 G G B . n B 2 11 C 11 108 108 C C B . n B 2 12 A 12 109 109 A A B . n B 2 13 G 13 110 110 G G B . n B 2 14 C 14 111 111 C C B . n B 2 15 C 15 112 112 C C B . n B 2 16 5BU 16 113 113 5BU 5BU B . n B 2 17 C 17 114 114 C C B . n B 2 18 C 18 115 115 C C B . n B 2 19 G 19 116 116 G G B . n B 2 20 G 20 117 117 G G B . n C 1 1 C 1 47 47 C C C . n C 1 2 G 2 48 48 G G C . n C 1 3 G 3 49 49 G G C . n C 1 4 A 4 50 50 A A C . n C 1 5 G 5 51 51 G G C . n C 1 6 G 6 52 52 G G C . n C 1 7 A 7 53 53 A A C . n C 1 8 A 8 54 54 A A C . n C 1 9 C 9 55 55 C C C . n C 1 10 U 10 56 56 U U C . n C 1 11 A 11 57 57 A A C . n C 1 12 C 12 58 58 C C C . n C 1 13 U 13 59 59 U U C . n C 1 14 G 14 60 60 G G C . n C 1 15 U 15 61 61 U U C . n C 1 16 C 16 62 62 C C C . n C 1 17 U 17 63 63 U U C . n C 1 18 U 18 64 64 U U C . n C 1 19 C 19 65 65 C C C . n C 1 20 A 20 66 66 A A C . n C 1 21 C 21 67 67 C C C . n C 1 22 G 22 68 68 G G C . n C 1 23 C 23 69 69 C C C . n C 1 24 C 24 70 70 C C C . n D 2 1 G 1 98 98 G G D . n D 2 2 C 2 99 99 C C D . n D 2 3 G 3 100 100 G G D . n D 2 4 5BU 4 101 101 5BU 5BU D . n D 2 5 G 5 102 102 G G D . n D 2 6 U 6 103 103 U U D . n D 2 7 C 7 104 104 C C D . n D 2 8 G 8 105 105 G G D . n D 2 9 U 9 106 106 U U D . n D 2 10 G 10 107 107 G G D . n D 2 11 C 11 108 108 C C D . n D 2 12 A 12 109 109 A A D . n D 2 13 G 13 110 110 G G D . n D 2 14 C 14 111 111 C C D . n D 2 15 C 15 112 112 C C D . n D 2 16 5BU 16 113 113 5BU 5BU D . n D 2 17 C 17 114 114 C C D . n D 2 18 C 18 115 115 C C D . n D 2 19 G 19 116 116 G G D . n D 2 20 G 20 117 117 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SR 1 1001 1001 SR SR A . F 3 SR 1 1002 1002 SR SR A . G 3 SR 1 1006 1006 SR SR A . H 3 SR 1 1027 1027 SR SR A . I 3 SR 1 1005 1005 SR SR A . J 3 SR 1 1003 1003 SR SR C . K 3 SR 1 1004 1004 SR SR C . L 3 SR 1 1009 1009 SR SR C . M 3 SR 1 1022 1022 SR SR C . N 3 SR 1 1008 1008 SR SR C . O 4 HOH 1 1028 4 HOH HOH A . O 4 HOH 2 1029 9 HOH HOH A . O 4 HOH 3 1030 10 HOH HOH A . O 4 HOH 4 1031 12 HOH HOH A . O 4 HOH 5 1032 18 HOH HOH A . O 4 HOH 6 1033 23 HOH HOH A . O 4 HOH 7 1034 25 HOH HOH A . O 4 HOH 8 1035 44 HOH HOH A . O 4 HOH 9 1036 46 HOH HOH A . O 4 HOH 10 1037 47 HOH HOH A . O 4 HOH 11 1038 53 HOH HOH A . O 4 HOH 12 1039 59 HOH HOH A . O 4 HOH 13 1040 63 HOH HOH A . O 4 HOH 14 1041 67 HOH HOH A . O 4 HOH 15 1042 72 HOH HOH A . O 4 HOH 16 1043 74 HOH HOH A . O 4 HOH 17 1044 75 HOH HOH A . O 4 HOH 18 1045 92 HOH HOH A . O 4 HOH 19 1046 93 HOH HOH A . O 4 HOH 20 1047 103 HOH HOH A . O 4 HOH 21 1048 153 HOH HOH A . P 4 HOH 1 118 6 HOH HOH B . P 4 HOH 2 119 11 HOH HOH B . P 4 HOH 3 120 24 HOH HOH B . P 4 HOH 4 121 26 HOH HOH B . P 4 HOH 5 122 29 HOH HOH B . P 4 HOH 6 123 30 HOH HOH B . P 4 HOH 7 124 34 HOH HOH B . P 4 HOH 8 125 38 HOH HOH B . P 4 HOH 9 126 64 HOH HOH B . P 4 HOH 10 127 66 HOH HOH B . P 4 HOH 11 128 68 HOH HOH B . P 4 HOH 12 129 73 HOH HOH B . P 4 HOH 13 130 81 HOH HOH B . P 4 HOH 14 131 102 HOH HOH B . P 4 HOH 15 132 145 HOH HOH B . P 4 HOH 16 133 161 HOH HOH B . Q 4 HOH 1 1023 1 HOH HOH C . Q 4 HOH 2 1024 22 HOH HOH C . Q 4 HOH 3 1025 39 HOH HOH C . Q 4 HOH 4 1026 45 HOH HOH C . Q 4 HOH 5 1027 57 HOH HOH C . Q 4 HOH 6 1028 71 HOH HOH C . Q 4 HOH 7 1029 76 HOH HOH C . Q 4 HOH 8 1030 77 HOH HOH C . Q 4 HOH 9 1031 83 HOH HOH C . Q 4 HOH 10 1032 96 HOH HOH C . Q 4 HOH 11 1033 104 HOH HOH C . Q 4 HOH 12 1034 136 HOH HOH C . Q 4 HOH 13 1035 179 HOH HOH C . R 4 HOH 1 118 3 HOH HOH D . R 4 HOH 2 119 27 HOH HOH D . R 4 HOH 3 120 28 HOH HOH D . R 4 HOH 4 121 31 HOH HOH D . R 4 HOH 5 122 33 HOH HOH D . R 4 HOH 6 123 36 HOH HOH D . R 4 HOH 7 124 40 HOH HOH D . R 4 HOH 8 125 41 HOH HOH D . R 4 HOH 9 126 43 HOH HOH D . R 4 HOH 10 127 54 HOH HOH D . R 4 HOH 11 128 65 HOH HOH D . R 4 HOH 12 129 84 HOH HOH D . R 4 HOH 13 130 89 HOH HOH D . R 4 HOH 14 131 99 HOH HOH D . R 4 HOH 15 132 100 HOH HOH D . R 4 HOH 16 133 112 HOH HOH D . R 4 HOH 17 134 196 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5BU 4 B 5BU 101 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 16 B 5BU 113 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 3 D 5BU 4 D 5BU 101 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 4 D 5BU 16 D 5BU 113 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,O,P 2 1 C,D,J,K,L,M,N,Q,R # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4600 ? 1 MORE -144.5 ? 1 'SSA (A^2)' 7570 ? 2 'ABSA (A^2)' 4600 ? 2 MORE -144.5 ? 2 'SSA (A^2)' 7570 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A C 9 ? A C 55 ? 1_555 SR ? E SR . ? A SR 1001 ? 1_555 O ? O HOH . ? A HOH 1046 ? 1_555 67.0 ? 2 O2 ? A C 9 ? A C 55 ? 1_555 SR ? E SR . ? A SR 1001 ? 1_555 O ? P HOH . ? B HOH 126 ? 1_555 86.8 ? 3 O ? O HOH . ? A HOH 1046 ? 1_555 SR ? E SR . ? A SR 1001 ? 1_555 O ? P HOH . ? B HOH 126 ? 1_555 137.5 ? 4 O6 ? A G 14 ? A G 60 ? 1_555 SR ? F SR . ? A SR 1002 ? 1_555 O ? O HOH . ? A HOH 1038 ? 1_555 70.3 ? 5 O ? O HOH . ? A HOH 1032 ? 1_555 SR ? I SR . ? A SR 1005 ? 1_555 O ? O HOH . ? A HOH 1045 ? 1_555 88.9 ? 6 O6 ? C G 14 ? C G 60 ? 1_555 SR ? J SR . ? C SR 1003 ? 1_555 O ? Q HOH . ? C HOH 1032 ? 1_555 69.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.value' 17 3 'Structure model' '_struct_conn.conn_type_id' 18 3 'Structure model' '_struct_conn.id' 19 3 'Structure model' '_struct_conn.pdbx_dist_value' 20 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 3 'Structure model' '_struct_conn_type.id' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -9.5438 -7.1940 14.8938 -0.0837 -0.0901 -0.0066 -0.0447 0.0110 -0.0115 2.8545 0.4417 2.8951 0.1486 0.4450 0.2893 0.0175 -0.2278 0.2657 -0.1410 -0.1201 -0.2420 -0.2087 0.1855 0.1026 'X-RAY DIFFRACTION' 2 ? refined -29.1709 -27.0239 15.1391 -0.0229 -0.1024 -0.0170 -0.0504 -0.0022 0.0186 0.2019 2.8179 2.0653 -0.1002 0.0957 -0.0331 -0.1730 -0.1624 -0.1329 -0.2827 0.0546 0.2617 0.2838 -0.1908 0.1184 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 47 A 1 A 70 A 24 ? 'X-RAY DIFFRACTION' ? 2 1 B 98 B 1 B 117 B 20 ? 'X-RAY DIFFRACTION' ? 3 2 C 47 C 1 C 70 C 24 ? 'X-RAY DIFFRACTION' ? 4 2 D 98 D 1 D 117 D 20 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHASER phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 1023 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1024 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A G 52 ? ? "C3'" A G 52 ? ? "C2'" A G 52 ? ? 94.57 102.60 -8.03 1.00 N 2 1 "O4'" A C 55 ? ? "C1'" A C 55 ? ? N1 A C 55 ? ? 112.85 108.50 4.35 0.70 N 3 1 "C3'" A C 55 ? ? "O3'" A C 55 ? ? P A U 56 ? ? 127.63 119.70 7.93 1.20 Y 4 1 C2 A A 57 ? ? N3 A A 57 ? ? C4 A A 57 ? ? 113.88 110.60 3.28 0.50 N 5 1 "O4'" A U 59 ? ? "C1'" A U 59 ? ? N1 A U 59 ? ? 112.97 108.50 4.47 0.70 N 6 1 "O4'" A U 63 ? ? "C1'" A U 63 ? ? N1 A U 63 ? ? 112.82 108.50 4.32 0.70 N 7 1 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.96 108.50 4.46 0.70 N 8 1 "C1'" B G 105 ? ? "O4'" B G 105 ? ? "C4'" B G 105 ? ? 101.68 109.70 -8.02 0.70 N 9 1 "O4'" B G 105 ? ? "C1'" B G 105 ? ? N9 B G 105 ? ? 115.95 108.50 7.45 0.70 N 10 1 "C3'" B C 112 ? ? "O3'" B C 112 ? ? P B 5BU 113 ? ? 127.04 119.70 7.34 1.20 Y 11 1 "O4'" C U 56 ? ? "C1'" C U 56 ? ? N1 C U 56 ? ? 112.84 108.50 4.34 0.70 N 12 1 N1 C A 57 ? ? C2 C A 57 ? ? N3 C A 57 ? ? 126.23 129.30 -3.07 0.50 N 13 1 "O4'" D C 99 ? ? "C1'" D C 99 ? ? N1 D C 99 ? ? 113.07 108.50 4.57 0.70 N 14 1 "C5'" D G 100 ? ? "C4'" D G 100 ? ? "O4'" D G 100 ? ? 115.79 109.80 5.99 0.90 N 15 1 "C1'" D G 105 ? ? "O4'" D G 105 ? ? "C4'" D G 105 ? ? 105.31 109.70 -4.39 0.70 N 16 1 "O4'" D A 109 ? ? "C1'" D A 109 ? ? N9 D A 109 ? ? 113.36 108.50 4.86 0.70 N 17 1 N1 D A 109 ? ? C2 D A 109 ? ? N3 D A 109 ? ? 126.18 129.30 -3.12 0.50 N 18 1 "C3'" D C 112 ? ? "O3'" D C 112 ? ? P D 5BU 113 ? ? 128.34 119.70 8.64 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 SR SR SR N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2PN4 'double helix' 2PN4 'a-form double helix' 2PN4 'bulge loop' 2PN4 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 19 1_555 0.022 -0.230 -0.003 4.510 -8.536 0.876 1 A_C47:G116_B A 47 ? B 116 ? 19 1 1 A G 2 1_555 B C 18 1_555 -0.408 -0.355 0.083 3.342 -8.694 -0.400 2 A_G48:C115_B A 48 ? B 115 ? 19 1 1 A G 3 1_555 B C 17 1_555 -0.341 -0.341 -0.181 -4.359 -11.999 -0.274 3 A_G49:C114_B A 49 ? B 114 ? 19 1 1 A A 4 1_555 B 5BU 16 1_555 0.162 -0.271 -0.244 -6.390 -11.200 1.497 4 A_A50:5BU113_B A 50 ? B 113 ? 20 1 1 A G 5 1_555 B C 15 1_555 -0.169 -0.190 -0.021 -0.094 -7.052 2.239 5 A_G51:C112_B A 51 ? B 112 ? 19 1 1 A G 6 1_555 B C 14 1_555 -0.503 -0.084 0.053 -5.602 -5.305 2.198 6 A_G52:C111_B A 52 ? B 111 ? 19 1 1 A C 12 1_555 B G 13 1_555 0.162 -0.193 -0.173 4.719 -19.825 0.929 7 A_C58:G110_B A 58 ? B 110 ? 19 1 1 A U 13 1_555 B A 12 1_555 0.153 -0.370 -0.014 0.581 -17.749 -5.942 8 A_U59:A109_B A 59 ? B 109 ? 20 1 1 A G 14 1_555 B C 11 1_555 -0.303 -0.209 0.414 -1.709 -13.559 -0.602 9 A_G60:C108_B A 60 ? B 108 ? 19 1 1 A U 15 1_555 B G 10 1_555 2.158 -0.622 0.247 -1.736 -12.452 -0.084 10 A_U61:G107_B A 61 ? B 107 ? 28 1 1 A C 16 1_555 B G 8 1_555 -0.057 -0.225 0.150 4.244 -11.471 -4.478 11 A_C62:G105_B A 62 ? B 105 ? 19 1 1 A U 17 1_555 B C 7 1_555 0.001 -1.533 0.208 10.000 -27.450 20.506 12 A_U63:C104_B A 63 ? B 104 ? 18 1 1 A U 18 1_555 B U 6 1_555 -2.423 -1.767 0.767 3.041 -17.954 20.007 13 A_U64:U103_B A 64 ? B 103 ? 16 1 1 A C 19 1_555 B G 5 1_555 1.042 -0.400 0.763 -6.060 -19.410 3.145 14 A_C65:G102_B A 65 ? B 102 ? 19 1 1 A A 20 1_555 B 5BU 4 1_555 0.093 -0.279 0.375 -0.478 -14.007 -3.772 15 A_A66:5BU101_B A 66 ? B 101 ? 20 1 1 A C 21 1_555 B G 3 1_555 0.123 0.009 0.290 5.461 -16.536 -1.208 16 A_C67:G100_B A 67 ? B 100 ? 19 1 1 A G 22 1_555 B C 2 1_555 0.120 -0.196 0.219 -3.532 -23.447 0.526 17 A_G68:C99_B A 68 ? B 99 ? 19 1 1 A C 23 1_555 B G 1 1_555 0.594 0.044 0.393 -7.671 -21.754 1.055 18 A_C69:G98_B A 69 ? B 98 ? 19 1 1 C C 1 1_555 D G 19 1_555 0.293 -0.246 -0.155 7.389 -12.784 0.006 19 C_C47:G116_D C 47 ? D 116 ? 19 1 1 C G 2 1_555 D C 18 1_555 -0.463 -0.238 0.049 -0.109 -12.525 -1.041 20 C_G48:C115_D C 48 ? D 115 ? 19 1 1 C G 3 1_555 D C 17 1_555 -0.358 -0.224 -0.202 -5.735 -12.676 2.243 21 C_G49:C114_D C 49 ? D 114 ? 19 1 1 C A 4 1_555 D 5BU 16 1_555 0.089 -0.266 -0.097 -5.970 -12.051 0.907 22 C_A50:5BU113_D C 50 ? D 113 ? 20 1 1 C G 5 1_555 D C 15 1_555 -0.288 -0.176 -0.111 -3.817 -10.209 2.552 23 C_G51:C112_D C 51 ? D 112 ? 19 1 1 C G 6 1_555 D C 14 1_555 -0.472 -0.164 -0.187 -7.473 -4.163 0.413 24 C_G52:C111_D C 52 ? D 111 ? 19 1 1 C C 12 1_555 D G 13 1_555 0.210 -0.162 -0.138 5.056 -21.765 -1.278 25 C_C58:G110_D C 58 ? D 110 ? 19 1 1 C U 13 1_555 D A 12 1_555 0.251 -0.354 0.148 -1.683 -16.699 -3.746 26 C_U59:A109_D C 59 ? D 109 ? 20 1 1 C G 14 1_555 D C 11 1_555 -0.358 -0.083 0.036 -5.442 -17.409 1.911 27 C_G60:C108_D C 60 ? D 108 ? 19 1 1 C U 15 1_555 D G 10 1_555 2.154 -0.715 0.281 -0.357 -16.129 -1.610 28 C_U61:G107_D C 61 ? D 107 ? 28 1 1 C C 16 1_555 D G 8 1_555 -0.317 -0.133 -0.059 2.409 -12.270 -2.429 29 C_C62:G105_D C 62 ? D 105 ? 19 1 1 C U 17 1_555 D C 7 1_555 0.101 -1.743 0.052 8.831 -26.809 16.049 30 C_U63:C104_D C 63 ? D 104 ? 18 1 1 C U 18 1_555 D U 6 1_555 -2.238 -2.061 0.700 -2.703 -19.119 12.765 31 C_U64:U103_D C 64 ? D 103 ? 16 1 1 C C 19 1_555 D G 5 1_555 0.811 -0.325 0.267 -5.184 -17.895 2.727 32 C_C65:G102_D C 65 ? D 102 ? 19 1 1 C A 20 1_555 D 5BU 4 1_555 0.280 -0.328 0.462 0.396 -13.913 -0.491 33 C_A66:5BU101_D C 66 ? D 101 ? 20 1 1 C C 21 1_555 D G 3 1_555 -0.364 0.163 0.506 0.144 -18.488 4.491 34 C_C67:G100_D C 67 ? D 100 ? 19 1 1 C G 22 1_555 D C 2 1_555 0.406 0.012 0.632 -2.111 -22.161 2.970 35 C_G68:C99_D C 68 ? D 99 ? 19 1 1 C C 23 1_555 D G 1 1_555 0.926 -0.096 0.449 -4.804 -24.773 3.560 36 C_C69:G98_D C 69 ? D 98 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 19 1_555 A G 2 1_555 B C 18 1_555 -0.590 -1.615 3.213 -1.438 9.183 31.241 -4.351 0.822 2.668 16.597 2.600 32.561 1 AA_C47G48:C115G116_BB A 47 ? B 116 ? A 48 ? B 115 ? 1 A G 2 1_555 B C 18 1_555 A G 3 1_555 B C 17 1_555 0.402 -1.854 3.464 2.214 5.084 33.026 -4.075 -0.325 3.171 8.865 -3.860 33.475 2 AA_G48G49:C114C115_BB A 48 ? B 115 ? A 49 ? B 114 ? 1 A G 3 1_555 B C 17 1_555 A A 4 1_555 B 5BU 16 1_555 -0.144 -1.343 3.256 0.145 8.270 34.091 -3.408 0.259 2.862 13.854 -0.243 35.051 3 AA_G49A50:5BU113C114_BB A 49 ? B 114 ? A 50 ? B 113 ? 1 A A 4 1_555 B 5BU 16 1_555 A G 5 1_555 B C 15 1_555 0.796 -1.943 3.089 0.444 2.098 27.025 -4.634 -1.595 2.945 4.480 -0.949 27.109 4 AA_A50G51:C1125BU113_BB A 50 ? B 113 ? A 51 ? B 112 ? 1 A G 5 1_555 B C 15 1_555 A G 6 1_555 B C 14 1_555 0.548 -2.234 3.337 1.300 4.391 29.273 -5.272 -0.804 2.998 8.621 -2.552 29.621 5 AA_G51G52:C111C112_BB A 51 ? B 112 ? A 52 ? B 111 ? 1 A C 12 1_555 B G 13 1_555 A U 13 1_555 B A 12 1_555 -0.359 -0.967 3.292 -0.881 14.406 35.407 -3.221 0.443 2.718 22.564 1.380 38.148 6 AA_C58U59:A109G110_BB A 58 ? B 110 ? A 59 ? B 109 ? 1 A U 13 1_555 B A 12 1_555 A G 14 1_555 B C 11 1_555 0.535 -1.044 3.103 -1.543 9.456 32.370 -3.186 -1.149 2.674 16.515 2.695 33.722 7 AA_U59G60:C108A109_BB A 59 ? B 109 ? A 60 ? B 108 ? 1 A G 14 1_555 B C 11 1_555 A U 15 1_555 B G 10 1_555 0.591 -1.172 3.267 4.126 4.012 45.550 -1.847 -0.403 3.197 5.158 -5.304 45.893 8 AA_G60U61:G107C108_BB A 60 ? B 108 ? A 61 ? B 107 ? 1 A U 15 1_555 B G 10 1_555 A C 16 1_555 B G 8 1_555 0.306 -1.783 2.720 4.190 8.894 28.131 -4.881 0.069 2.094 17.630 -8.305 29.767 9 AA_U61C62:G105G107_BB A 61 ? B 107 ? A 62 ? B 105 ? 1 A C 16 1_555 B G 8 1_555 A U 17 1_555 B C 7 1_555 -0.060 -1.215 3.084 -4.742 14.416 19.588 -6.474 -1.057 1.759 36.160 11.894 24.733 10 AA_C62U63:C104G105_BB A 62 ? B 105 ? A 63 ? B 104 ? 1 A U 17 1_555 B C 7 1_555 A U 18 1_555 B U 6 1_555 0.248 -1.837 2.898 -12.094 12.626 28.028 -4.880 -2.009 1.696 23.408 22.423 32.941 11 AA_U63U64:U103C104_BB A 63 ? B 104 ? A 64 ? B 103 ? 1 A U 18 1_555 B U 6 1_555 A C 19 1_555 B G 5 1_555 -0.775 -0.719 3.608 1.483 1.794 52.738 -0.936 0.977 3.562 2.018 -1.668 52.785 12 AA_U64C65:G102U103_BB A 64 ? B 103 ? A 65 ? B 102 ? 1 A C 19 1_555 B G 5 1_555 A A 20 1_555 B 5BU 4 1_555 -1.114 -1.822 2.795 1.707 8.772 19.938 -7.302 3.426 1.744 23.847 -4.640 21.831 13 AA_C65A66:5BU101G102_BB A 65 ? B 102 ? A 66 ? B 101 ? 1 A A 20 1_555 B 5BU 4 1_555 A C 21 1_555 B G 3 1_555 0.420 -1.320 3.001 0.662 1.752 36.418 -2.330 -0.587 2.943 2.800 -1.059 36.465 14 AA_A66C67:G1005BU101_BB A 66 ? B 101 ? A 67 ? B 100 ? 1 A C 21 1_555 B G 3 1_555 A G 22 1_555 B C 2 1_555 -0.287 -1.744 3.292 2.044 13.022 28.676 -5.383 0.869 2.279 24.709 -3.879 31.503 15 AA_C67G68:C99G100_BB A 67 ? B 100 ? A 68 ? B 99 ? 1 A G 22 1_555 B C 2 1_555 A C 23 1_555 B G 1 1_555 0.095 -1.401 3.262 0.740 9.289 37.981 -3.157 -0.057 2.856 14.015 -1.117 39.066 16 AA_G68C69:G98C99_BB A 68 ? B 99 ? A 69 ? B 98 ? 1 C C 1 1_555 D G 19 1_555 C G 2 1_555 D C 18 1_555 -0.659 -1.686 3.386 -1.933 11.184 29.253 -5.128 0.874 2.617 21.167 3.659 31.332 17 CC_C47G48:C115G116_DD C 47 ? D 116 ? C 48 ? D 115 ? 1 C G 2 1_555 D C 18 1_555 C G 3 1_555 D C 17 1_555 0.522 -1.795 3.453 2.044 6.698 32.597 -4.254 -0.567 3.060 11.765 -3.590 33.321 18 CC_G48G49:C114C115_DD C 48 ? D 115 ? C 49 ? D 114 ? 1 C G 3 1_555 D C 17 1_555 C A 4 1_555 D 5BU 16 1_555 -0.360 -1.498 3.175 -1.920 6.302 34.462 -3.370 0.329 2.880 10.518 3.205 35.067 19 CC_G49A50:5BU113C114_DD C 49 ? D 114 ? C 50 ? D 113 ? 1 C A 4 1_555 D 5BU 16 1_555 C G 5 1_555 D C 15 1_555 0.893 -1.953 3.180 2.304 3.731 28.066 -4.792 -1.320 2.963 7.634 -4.715 28.400 20 CC_A50G51:C1125BU113_DD C 50 ? D 113 ? C 51 ? D 112 ? 1 C G 5 1_555 D C 15 1_555 C G 6 1_555 D C 14 1_555 0.272 -2.114 3.362 1.541 3.872 28.789 -5.048 -0.208 3.067 7.736 -3.078 29.083 21 CC_G51G52:C111C112_DD C 51 ? D 112 ? C 52 ? D 111 ? 1 C C 12 1_555 D G 13 1_555 C U 13 1_555 D A 12 1_555 -0.374 -0.842 3.330 -2.759 14.089 36.932 -2.869 0.235 2.854 21.280 4.167 39.533 22 CC_C58U59:A109G110_DD C 58 ? D 110 ? C 59 ? D 109 ? 1 C U 13 1_555 D A 12 1_555 C G 14 1_555 D C 11 1_555 0.427 -1.089 3.222 1.692 10.225 30.444 -3.687 -0.488 2.742 18.800 -3.112 32.120 23 CC_U59G60:C108A109_DD C 59 ? D 109 ? C 60 ? D 108 ? 1 C G 14 1_555 D C 11 1_555 C U 15 1_555 D G 10 1_555 0.536 -1.027 3.142 0.419 3.357 45.938 -1.587 -0.650 3.068 4.295 -0.536 46.055 24 CC_G60U61:G107C108_DD C 60 ? D 108 ? C 61 ? D 107 ? 1 C U 15 1_555 D G 10 1_555 C C 16 1_555 D G 8 1_555 0.352 -1.660 2.786 6.810 8.636 25.013 -5.210 0.587 2.127 18.822 -14.842 27.289 25 CC_U61C62:G105G107_DD C 61 ? D 107 ? C 62 ? D 105 ? 1 C C 16 1_555 D G 8 1_555 C U 17 1_555 D C 7 1_555 -0.072 -1.102 3.149 -6.484 18.138 23.584 -5.244 -0.985 1.823 37.388 13.366 30.364 26 CC_C62U63:C104G105_DD C 62 ? D 105 ? C 63 ? D 104 ? 1 C U 17 1_555 D C 7 1_555 C U 18 1_555 D U 6 1_555 0.102 -1.449 3.128 -12.838 11.469 32.279 -3.720 -1.737 2.300 19.034 21.305 36.475 27 CC_U63U64:U103C104_DD C 63 ? D 104 ? C 64 ? D 103 ? 1 C U 18 1_555 D U 6 1_555 C C 19 1_555 D G 5 1_555 -1.187 -1.099 3.385 3.739 2.557 44.833 -1.667 1.889 3.217 3.343 -4.888 45.050 28 CC_U64C65:G102U103_DD C 64 ? D 103 ? C 65 ? D 102 ? 1 C C 19 1_555 D G 5 1_555 C A 20 1_555 D 5BU 4 1_555 -0.614 -1.643 2.900 -0.998 8.491 24.363 -5.595 1.149 2.232 19.373 2.277 25.798 29 CC_C65A66:5BU101G102_DD C 65 ? D 102 ? C 66 ? D 101 ? 1 C A 20 1_555 D 5BU 4 1_555 C C 21 1_555 D G 3 1_555 0.502 -1.661 3.195 0.230 4.412 31.248 -3.827 -0.882 2.942 8.139 -0.424 31.551 30 CC_A66C67:G1005BU101_DD C 66 ? D 101 ? C 67 ? D 100 ? 1 C C 21 1_555 D G 3 1_555 C G 22 1_555 D C 2 1_555 -0.136 -1.423 3.129 0.380 6.784 32.357 -3.550 0.297 2.780 12.008 -0.673 33.044 31 CC_C67G68:C99G100_DD C 67 ? D 100 ? C 68 ? D 99 ? 1 C G 22 1_555 D C 2 1_555 C C 23 1_555 D G 1 1_555 0.212 -1.363 3.167 5.447 7.720 39.933 -2.735 0.254 2.870 11.116 -7.843 40.991 32 CC_G68C69:G98C99_DD C 68 ? D 99 ? C 69 ? D 98 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'STRONTIUM ION' SR 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2PN3 _pdbx_initial_refinement_model.details 'PDB ENTRY 2PN3' #