data_2PNN # _entry.id 2PNN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PNN RCSB RCSB042577 WWPDB D_1000042577 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2NYJ _pdbx_database_related.details 'The same protein in a different crystal form.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PNN _pdbx_database_status.recvd_initial_deposition_date 2007-04-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jin, X.' 1 'Gaudet, R.' 2 # _citation.id primary _citation.title 'The Ankyrin Repeats of TRPV1 Bind Multiple Ligands and Modulate Channel Sensitivity.' _citation.journal_abbrev Neuron _citation.journal_volume 54 _citation.page_first 905 _citation.page_last 918 _citation.year 2007 _citation.journal_id_ASTM NERNET _citation.country US _citation.journal_id_ISSN 0896-6273 _citation.journal_id_CSD 2038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17582331 _citation.pdbx_database_id_DOI 10.1016/j.neuron.2007.05.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lishko, P.V.' 1 primary 'Procko, E.' 2 primary 'Jin, X.' 3 primary 'Phelps, C.B.' 4 primary 'Gaudet, R.' 5 # _cell.entry_id 2PNN _cell.length_a 99.469 _cell.length_b 99.469 _cell.length_c 106.729 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PNN _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transient receptor potential cation channel subfamily V member 1' 30439.248 1 ? ? 'Ankyrin Repeat Domain' ? 2 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 3 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TrpV1, osm-9-like TRP channel 1, OTRPC1, Vanilloid receptor 1, Vanilloid receptor type 1-like, Capsaicin receptor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA(MSE)LNLHNGQNDTIALL LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN(MSE)TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS(MSE)YNEILILGAKLHPTLKLEEI TNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA ASSGKIGVLAYILQREIHEPECRHAAAHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 VAL n 1 3 SER n 1 4 ALA n 1 5 GLY n 1 6 GLU n 1 7 LYS n 1 8 PRO n 1 9 PRO n 1 10 ARG n 1 11 LEU n 1 12 TYR n 1 13 ASP n 1 14 ARG n 1 15 ARG n 1 16 SER n 1 17 ILE n 1 18 PHE n 1 19 ASP n 1 20 ALA n 1 21 VAL n 1 22 ALA n 1 23 GLN n 1 24 SER n 1 25 ASN n 1 26 CYS n 1 27 GLN n 1 28 GLU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 LEU n 1 33 LEU n 1 34 PRO n 1 35 PHE n 1 36 LEU n 1 37 GLN n 1 38 ARG n 1 39 SER n 1 40 LYS n 1 41 LYS n 1 42 ARG n 1 43 LEU n 1 44 THR n 1 45 ASP n 1 46 SER n 1 47 GLU n 1 48 PHE n 1 49 LYS n 1 50 ASP n 1 51 PRO n 1 52 GLU n 1 53 THR n 1 54 GLY n 1 55 LYS n 1 56 THR n 1 57 CYS n 1 58 LEU n 1 59 LEU n 1 60 LYS n 1 61 ALA n 1 62 MSE n 1 63 LEU n 1 64 ASN n 1 65 LEU n 1 66 HIS n 1 67 ASN n 1 68 GLY n 1 69 GLN n 1 70 ASN n 1 71 ASP n 1 72 THR n 1 73 ILE n 1 74 ALA n 1 75 LEU n 1 76 LEU n 1 77 LEU n 1 78 ASP n 1 79 VAL n 1 80 ALA n 1 81 ARG n 1 82 LYS n 1 83 THR n 1 84 ASP n 1 85 SER n 1 86 LEU n 1 87 LYS n 1 88 GLN n 1 89 PHE n 1 90 VAL n 1 91 ASN n 1 92 ALA n 1 93 SER n 1 94 TYR n 1 95 THR n 1 96 ASP n 1 97 SER n 1 98 TYR n 1 99 TYR n 1 100 LYS n 1 101 GLY n 1 102 GLN n 1 103 THR n 1 104 ALA n 1 105 LEU n 1 106 HIS n 1 107 ILE n 1 108 ALA n 1 109 ILE n 1 110 GLU n 1 111 ARG n 1 112 ARG n 1 113 ASN n 1 114 MSE n 1 115 THR n 1 116 LEU n 1 117 VAL n 1 118 THR n 1 119 LEU n 1 120 LEU n 1 121 VAL n 1 122 GLU n 1 123 ASN n 1 124 GLY n 1 125 ALA n 1 126 ASP n 1 127 VAL n 1 128 GLN n 1 129 ALA n 1 130 ALA n 1 131 ALA n 1 132 ASN n 1 133 GLY n 1 134 ASP n 1 135 PHE n 1 136 PHE n 1 137 LYS n 1 138 LYS n 1 139 THR n 1 140 LYS n 1 141 GLY n 1 142 ARG n 1 143 PRO n 1 144 GLY n 1 145 PHE n 1 146 TYR n 1 147 PHE n 1 148 GLY n 1 149 GLU n 1 150 LEU n 1 151 PRO n 1 152 LEU n 1 153 SER n 1 154 LEU n 1 155 ALA n 1 156 ALA n 1 157 CYS n 1 158 THR n 1 159 ASN n 1 160 GLN n 1 161 LEU n 1 162 ALA n 1 163 ILE n 1 164 VAL n 1 165 LYS n 1 166 PHE n 1 167 LEU n 1 168 LEU n 1 169 GLN n 1 170 ASN n 1 171 SER n 1 172 TRP n 1 173 GLN n 1 174 PRO n 1 175 ALA n 1 176 ASP n 1 177 ILE n 1 178 SER n 1 179 ALA n 1 180 ARG n 1 181 ASP n 1 182 SER n 1 183 VAL n 1 184 GLY n 1 185 ASN n 1 186 THR n 1 187 VAL n 1 188 LEU n 1 189 HIS n 1 190 ALA n 1 191 LEU n 1 192 VAL n 1 193 GLU n 1 194 VAL n 1 195 ALA n 1 196 ASP n 1 197 ASN n 1 198 THR n 1 199 VAL n 1 200 ASP n 1 201 ASN n 1 202 THR n 1 203 LYS n 1 204 PHE n 1 205 VAL n 1 206 THR n 1 207 SER n 1 208 MSE n 1 209 TYR n 1 210 ASN n 1 211 GLU n 1 212 ILE n 1 213 LEU n 1 214 ILE n 1 215 LEU n 1 216 GLY n 1 217 ALA n 1 218 LYS n 1 219 LEU n 1 220 HIS n 1 221 PRO n 1 222 THR n 1 223 LEU n 1 224 LYS n 1 225 LEU n 1 226 GLU n 1 227 GLU n 1 228 ILE n 1 229 THR n 1 230 ASN n 1 231 ARG n 1 232 LYS n 1 233 GLY n 1 234 LEU n 1 235 THR n 1 236 PRO n 1 237 LEU n 1 238 ALA n 1 239 LEU n 1 240 ALA n 1 241 ALA n 1 242 SER n 1 243 SER n 1 244 GLY n 1 245 LYS n 1 246 ILE n 1 247 GLY n 1 248 VAL n 1 249 LEU n 1 250 ALA n 1 251 TYR n 1 252 ILE n 1 253 LEU n 1 254 GLN n 1 255 ARG n 1 256 GLU n 1 257 ILE n 1 258 HIS n 1 259 GLU n 1 260 PRO n 1 261 GLU n 1 262 CYS n 1 263 ARG n 1 264 HIS n 1 265 ALA n 1 266 ALA n 1 267 ALA n 1 268 HIS n 1 269 HIS n 1 270 HIS n 1 271 HIS n 1 272 HIS n 1 273 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene 'Trpv1, Vr1, Vr1l' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET21A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRPV1_RAT _struct_ref.pdbx_db_accession O35433 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA ASSGKIGVLAYILQREIHEPECRH ; _struct_ref.pdbx_align_begin 101 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PNN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 264 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O35433 _struct_ref_seq.db_align_beg 101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 364 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 101 _struct_ref_seq.pdbx_auth_seq_align_end 364 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PNN MSE A 62 ? UNP O35433 MET 162 'MODIFIED RESIDUE' 162 1 1 2PNN MSE A 114 ? UNP O35433 MET 214 'MODIFIED RESIDUE' 214 2 1 2PNN MSE A 208 ? UNP O35433 MET 308 'MODIFIED RESIDUE' 308 3 1 2PNN ALA A 265 ? UNP O35433 ? ? 'CLONING ARTIFACT' 365 4 1 2PNN ALA A 266 ? UNP O35433 ? ? 'CLONING ARTIFACT' 366 5 1 2PNN ALA A 267 ? UNP O35433 ? ? 'CLONING ARTIFACT' 367 6 1 2PNN HIS A 268 ? UNP O35433 ? ? 'CLONING ARTIFACT' 368 7 1 2PNN HIS A 269 ? UNP O35433 ? ? 'CLONING ARTIFACT' 369 8 1 2PNN HIS A 270 ? UNP O35433 ? ? 'CLONING ARTIFACT' 370 9 1 2PNN HIS A 271 ? UNP O35433 ? ? 'CLONING ARTIFACT' 371 10 1 2PNN HIS A 272 ? UNP O35433 ? ? 'CLONING ARTIFACT' 372 11 1 2PNN HIS A 273 ? UNP O35433 ? ? 'CLONING ARTIFACT' 373 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PNN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.34 _exptl_crystal.density_percent_sol 63.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.00 _exptl_crystal_grow.pdbx_details '3% PEG 8000, 0.1M SODIUM CITRATE, 5MM ATP, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, pH 5.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-04-21 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2PNN _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.700 _reflns.number_obs 13575 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.56 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PNN _refine.ls_number_reflns_obs 9618 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 93.7 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 488 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 37.68 _refine.aniso_B[1][1] 2.84000 _refine.aniso_B[2][2] 2.84000 _refine.aniso_B[3][3] -4.25000 _refine.aniso_B[1][2] 1.42000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.657 _refine.pdbx_overall_ESU_R_Free 0.320 _refine.overall_SU_ML 0.285 _refine.overall_SU_B 26.929 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1932 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 2034 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1996 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.718 1.993 ? 2710 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.120 5.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.913 24.767 ? 86 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.463 15.000 ? 354 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.581 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 319 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1460 'X-RAY DIFFRACTION' ? r_nbd_refined 0.245 0.200 ? 1061 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.317 0.200 ? 1362 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.158 0.200 ? 83 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.243 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.277 0.200 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_it 0.391 1.500 ? 1260 'X-RAY DIFFRACTION' ? r_mcangle_it 0.709 2.000 ? 1985 'X-RAY DIFFRACTION' ? r_scbond_it 1.095 3.000 ? 819 'X-RAY DIFFRACTION' ? r_scangle_it 1.787 4.500 ? 725 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.77 _refine_ls_shell.number_reflns_R_work 644 _refine_ls_shell.R_factor_R_work 0.322 _refine_ls_shell.percent_reflns_obs 88.80 _refine_ls_shell.R_factor_R_free 0.425 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PNN _struct.title 'Crystal Structure of the Ankyrin Repeat Domain of Trpv1' _struct.pdbx_descriptor 'Transient receptor potential cation channel subfamily V member 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PNN _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'trpv1, ankyrin repeat domain, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 13 ? GLN A 23 ? ASP A 113 GLN A 123 1 ? 11 HELX_P HELX_P2 2 SER A 31 ? SER A 39 ? SER A 131 SER A 139 1 ? 9 HELX_P HELX_P3 3 ASP A 45 ? LYS A 49 ? ASP A 145 LYS A 149 5 ? 5 HELX_P HELX_P4 4 THR A 56 ? ASN A 64 ? THR A 156 ASN A 164 1 ? 9 HELX_P HELX_P5 5 ASN A 70 ? THR A 83 ? ASN A 170 THR A 183 1 ? 14 HELX_P HELX_P6 6 SER A 85 ? ASN A 91 ? SER A 185 ASN A 191 1 ? 7 HELX_P HELX_P7 7 THR A 103 ? ARG A 111 ? THR A 203 ARG A 211 1 ? 9 HELX_P HELX_P8 8 ASN A 113 ? ASN A 123 ? ASN A 213 ASN A 223 1 ? 11 HELX_P HELX_P9 9 GLY A 133 ? LYS A 137 ? GLY A 233 LYS A 237 5 ? 5 HELX_P HELX_P10 10 LEU A 150 ? THR A 158 ? LEU A 250 THR A 258 1 ? 9 HELX_P HELX_P11 11 GLN A 160 ? ASN A 170 ? GLN A 260 ASN A 270 1 ? 11 HELX_P HELX_P12 12 THR A 186 ? ALA A 195 ? THR A 286 ALA A 295 1 ? 10 HELX_P HELX_P13 13 THR A 198 ? HIS A 220 ? THR A 298 HIS A 320 1 ? 23 HELX_P HELX_P14 14 LYS A 224 ? ILE A 228 ? LYS A 324 ILE A 328 5 ? 5 HELX_P HELX_P15 15 THR A 235 ? SER A 243 ? THR A 335 SER A 343 1 ? 9 HELX_P HELX_P16 16 LYS A 245 ? ILE A 257 ? LYS A 345 ILE A 357 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 61 C ? ? ? 1_555 A MSE 62 N ? ? A ALA 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 62 C ? ? ? 1_555 A LEU 63 N ? ? A MSE 162 A LEU 163 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A ASN 113 C ? ? ? 1_555 A MSE 114 N ? ? A ASN 213 A MSE 214 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 114 C ? ? ? 1_555 A THR 115 N ? ? A MSE 214 A THR 215 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A SER 207 C ? ? ? 1_555 A MSE 208 N ? ? A SER 307 A MSE 308 1_555 ? ? ? ? ? ? ? 1.321 ? covale6 covale ? ? A MSE 208 C ? ? ? 1_555 A TYR 209 N ? ? A MSE 308 A TYR 309 1_555 ? ? ? ? ? ? ? 1.324 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE ATP A 374' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 HOH C . ? HOH A 46 . ? 1_555 ? 2 AC1 13 HOH C . ? HOH A 71 . ? 1_555 ? 3 AC1 13 ARG A 15 ? ARG A 115 . ? 1_555 ? 4 AC1 13 LYS A 55 ? LYS A 155 . ? 1_555 ? 5 AC1 13 LYS A 60 ? LYS A 160 . ? 1_555 ? 6 AC1 13 LEU A 63 ? LEU A 163 . ? 1_555 ? 7 AC1 13 ASN A 64 ? ASN A 164 . ? 1_555 ? 8 AC1 13 TYR A 99 ? TYR A 199 . ? 1_555 ? 9 AC1 13 GLN A 102 ? GLN A 202 . ? 1_555 ? 10 AC1 13 GLU A 110 ? GLU A 210 . ? 1_555 ? 11 AC1 13 ARG A 111 ? ARG A 211 . ? 1_555 ? 12 AC1 13 GLN A 169 ? GLN A 269 . ? 8_544 ? 13 AC1 13 LYS A 218 ? LYS A 318 . ? 8_544 ? # _database_PDB_matrix.entry_id 2PNN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PNN _atom_sites.fract_transf_matrix[1][1] 0.010053 _atom_sites.fract_transf_matrix[1][2] 0.005804 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011609 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009370 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 101 ? ? ? A . n A 1 2 VAL 2 102 ? ? ? A . n A 1 3 SER 3 103 ? ? ? A . n A 1 4 ALA 4 104 ? ? ? A . n A 1 5 GLY 5 105 ? ? ? A . n A 1 6 GLU 6 106 ? ? ? A . n A 1 7 LYS 7 107 ? ? ? A . n A 1 8 PRO 8 108 ? ? ? A . n A 1 9 PRO 9 109 ? ? ? A . n A 1 10 ARG 10 110 ? ? ? A . n A 1 11 LEU 11 111 111 LEU LEU A . n A 1 12 TYR 12 112 112 TYR TYR A . n A 1 13 ASP 13 113 113 ASP ASP A . n A 1 14 ARG 14 114 114 ARG ARG A . n A 1 15 ARG 15 115 115 ARG ARG A . n A 1 16 SER 16 116 116 SER SER A . n A 1 17 ILE 17 117 117 ILE ILE A . n A 1 18 PHE 18 118 118 PHE PHE A . n A 1 19 ASP 19 119 119 ASP ASP A . n A 1 20 ALA 20 120 120 ALA ALA A . n A 1 21 VAL 21 121 121 VAL VAL A . n A 1 22 ALA 22 122 122 ALA ALA A . n A 1 23 GLN 23 123 123 GLN GLN A . n A 1 24 SER 24 124 124 SER SER A . n A 1 25 ASN 25 125 125 ASN ASN A . n A 1 26 CYS 26 126 126 CYS CYS A . n A 1 27 GLN 27 127 127 GLN GLN A . n A 1 28 GLU 28 128 128 GLU GLU A . n A 1 29 LEU 29 129 129 LEU LEU A . n A 1 30 GLU 30 130 130 GLU GLU A . n A 1 31 SER 31 131 131 SER SER A . n A 1 32 LEU 32 132 132 LEU LEU A . n A 1 33 LEU 33 133 133 LEU LEU A . n A 1 34 PRO 34 134 134 PRO PRO A . n A 1 35 PHE 35 135 135 PHE PHE A . n A 1 36 LEU 36 136 136 LEU LEU A . n A 1 37 GLN 37 137 137 GLN GLN A . n A 1 38 ARG 38 138 138 ARG ARG A . n A 1 39 SER 39 139 139 SER SER A . n A 1 40 LYS 40 140 140 LYS LYS A . n A 1 41 LYS 41 141 141 LYS LYS A . n A 1 42 ARG 42 142 142 ARG ARG A . n A 1 43 LEU 43 143 143 LEU LEU A . n A 1 44 THR 44 144 144 THR THR A . n A 1 45 ASP 45 145 145 ASP ASP A . n A 1 46 SER 46 146 146 SER SER A . n A 1 47 GLU 47 147 147 GLU GLU A . n A 1 48 PHE 48 148 148 PHE PHE A . n A 1 49 LYS 49 149 149 LYS LYS A . n A 1 50 ASP 50 150 150 ASP ASP A . n A 1 51 PRO 51 151 151 PRO PRO A . n A 1 52 GLU 52 152 152 GLU GLU A . n A 1 53 THR 53 153 153 THR THR A . n A 1 54 GLY 54 154 154 GLY GLY A . n A 1 55 LYS 55 155 155 LYS LYS A . n A 1 56 THR 56 156 156 THR THR A . n A 1 57 CYS 57 157 157 CYS CYS A . n A 1 58 LEU 58 158 158 LEU LEU A . n A 1 59 LEU 59 159 159 LEU LEU A . n A 1 60 LYS 60 160 160 LYS LYS A . n A 1 61 ALA 61 161 161 ALA ALA A . n A 1 62 MSE 62 162 162 MSE MSE A . n A 1 63 LEU 63 163 163 LEU LEU A . n A 1 64 ASN 64 164 164 ASN ASN A . n A 1 65 LEU 65 165 165 LEU LEU A . n A 1 66 HIS 66 166 166 HIS HIS A . n A 1 67 ASN 67 167 167 ASN ASN A . n A 1 68 GLY 68 168 168 GLY GLY A . n A 1 69 GLN 69 169 169 GLN GLN A . n A 1 70 ASN 70 170 170 ASN ASN A . n A 1 71 ASP 71 171 171 ASP ASP A . n A 1 72 THR 72 172 172 THR THR A . n A 1 73 ILE 73 173 173 ILE ILE A . n A 1 74 ALA 74 174 174 ALA ALA A . n A 1 75 LEU 75 175 175 LEU LEU A . n A 1 76 LEU 76 176 176 LEU LEU A . n A 1 77 LEU 77 177 177 LEU LEU A . n A 1 78 ASP 78 178 178 ASP ASP A . n A 1 79 VAL 79 179 179 VAL VAL A . n A 1 80 ALA 80 180 180 ALA ALA A . n A 1 81 ARG 81 181 181 ARG ARG A . n A 1 82 LYS 82 182 182 LYS LYS A . n A 1 83 THR 83 183 183 THR THR A . n A 1 84 ASP 84 184 184 ASP ASP A . n A 1 85 SER 85 185 185 SER SER A . n A 1 86 LEU 86 186 186 LEU LEU A . n A 1 87 LYS 87 187 187 LYS LYS A . n A 1 88 GLN 88 188 188 GLN GLN A . n A 1 89 PHE 89 189 189 PHE PHE A . n A 1 90 VAL 90 190 190 VAL VAL A . n A 1 91 ASN 91 191 191 ASN ASN A . n A 1 92 ALA 92 192 192 ALA ALA A . n A 1 93 SER 93 193 193 SER SER A . n A 1 94 TYR 94 194 194 TYR TYR A . n A 1 95 THR 95 195 195 THR THR A . n A 1 96 ASP 96 196 196 ASP ASP A . n A 1 97 SER 97 197 197 SER SER A . n A 1 98 TYR 98 198 198 TYR TYR A . n A 1 99 TYR 99 199 199 TYR TYR A . n A 1 100 LYS 100 200 200 LYS LYS A . n A 1 101 GLY 101 201 201 GLY GLY A . n A 1 102 GLN 102 202 202 GLN GLN A . n A 1 103 THR 103 203 203 THR THR A . n A 1 104 ALA 104 204 204 ALA ALA A . n A 1 105 LEU 105 205 205 LEU LEU A . n A 1 106 HIS 106 206 206 HIS HIS A . n A 1 107 ILE 107 207 207 ILE ILE A . n A 1 108 ALA 108 208 208 ALA ALA A . n A 1 109 ILE 109 209 209 ILE ILE A . n A 1 110 GLU 110 210 210 GLU GLU A . n A 1 111 ARG 111 211 211 ARG ARG A . n A 1 112 ARG 112 212 212 ARG ARG A . n A 1 113 ASN 113 213 213 ASN ASN A . n A 1 114 MSE 114 214 214 MSE MSE A . n A 1 115 THR 115 215 215 THR THR A . n A 1 116 LEU 116 216 216 LEU LEU A . n A 1 117 VAL 117 217 217 VAL VAL A . n A 1 118 THR 118 218 218 THR THR A . n A 1 119 LEU 119 219 219 LEU LEU A . n A 1 120 LEU 120 220 220 LEU LEU A . n A 1 121 VAL 121 221 221 VAL VAL A . n A 1 122 GLU 122 222 222 GLU GLU A . n A 1 123 ASN 123 223 223 ASN ASN A . n A 1 124 GLY 124 224 224 GLY GLY A . n A 1 125 ALA 125 225 225 ALA ALA A . n A 1 126 ASP 126 226 226 ASP ASP A . n A 1 127 VAL 127 227 227 VAL VAL A . n A 1 128 GLN 128 228 228 GLN GLN A . n A 1 129 ALA 129 229 229 ALA ALA A . n A 1 130 ALA 130 230 230 ALA ALA A . n A 1 131 ALA 131 231 231 ALA ALA A . n A 1 132 ASN 132 232 232 ASN ASN A . n A 1 133 GLY 133 233 233 GLY GLY A . n A 1 134 ASP 134 234 234 ASP ASP A . n A 1 135 PHE 135 235 235 PHE PHE A . n A 1 136 PHE 136 236 236 PHE PHE A . n A 1 137 LYS 137 237 237 LYS LYS A . n A 1 138 LYS 138 238 238 LYS LYS A . n A 1 139 THR 139 239 239 THR THR A . n A 1 140 LYS 140 240 240 LYS LYS A . n A 1 141 GLY 141 241 241 GLY GLY A . n A 1 142 ARG 142 242 242 ARG ARG A . n A 1 143 PRO 143 243 243 PRO PRO A . n A 1 144 GLY 144 244 244 GLY GLY A . n A 1 145 PHE 145 245 245 PHE PHE A . n A 1 146 TYR 146 246 246 TYR TYR A . n A 1 147 PHE 147 247 247 PHE PHE A . n A 1 148 GLY 148 248 248 GLY GLY A . n A 1 149 GLU 149 249 249 GLU GLU A . n A 1 150 LEU 150 250 250 LEU LEU A . n A 1 151 PRO 151 251 251 PRO PRO A . n A 1 152 LEU 152 252 252 LEU LEU A . n A 1 153 SER 153 253 253 SER SER A . n A 1 154 LEU 154 254 254 LEU LEU A . n A 1 155 ALA 155 255 255 ALA ALA A . n A 1 156 ALA 156 256 256 ALA ALA A . n A 1 157 CYS 157 257 257 CYS CYS A . n A 1 158 THR 158 258 258 THR THR A . n A 1 159 ASN 159 259 259 ASN ASN A . n A 1 160 GLN 160 260 260 GLN GLN A . n A 1 161 LEU 161 261 261 LEU LEU A . n A 1 162 ALA 162 262 262 ALA ALA A . n A 1 163 ILE 163 263 263 ILE ILE A . n A 1 164 VAL 164 264 264 VAL VAL A . n A 1 165 LYS 165 265 265 LYS LYS A . n A 1 166 PHE 166 266 266 PHE PHE A . n A 1 167 LEU 167 267 267 LEU LEU A . n A 1 168 LEU 168 268 268 LEU LEU A . n A 1 169 GLN 169 269 269 GLN GLN A . n A 1 170 ASN 170 270 270 ASN ASN A . n A 1 171 SER 171 271 271 SER SER A . n A 1 172 TRP 172 272 272 TRP TRP A . n A 1 173 GLN 173 273 273 GLN GLN A . n A 1 174 PRO 174 274 274 PRO PRO A . n A 1 175 ALA 175 275 275 ALA ALA A . n A 1 176 ASP 176 276 276 ASP ASP A . n A 1 177 ILE 177 277 277 ILE ILE A . n A 1 178 SER 178 278 278 SER SER A . n A 1 179 ALA 179 279 279 ALA ALA A . n A 1 180 ARG 180 280 280 ARG ARG A . n A 1 181 ASP 181 281 281 ASP ASP A . n A 1 182 SER 182 282 282 SER SER A . n A 1 183 VAL 183 283 283 VAL VAL A . n A 1 184 GLY 184 284 284 GLY GLY A . n A 1 185 ASN 185 285 285 ASN ASN A . n A 1 186 THR 186 286 286 THR THR A . n A 1 187 VAL 187 287 287 VAL VAL A . n A 1 188 LEU 188 288 288 LEU LEU A . n A 1 189 HIS 189 289 289 HIS HIS A . n A 1 190 ALA 190 290 290 ALA ALA A . n A 1 191 LEU 191 291 291 LEU LEU A . n A 1 192 VAL 192 292 292 VAL VAL A . n A 1 193 GLU 193 293 293 GLU GLU A . n A 1 194 VAL 194 294 294 VAL VAL A . n A 1 195 ALA 195 295 295 ALA ALA A . n A 1 196 ASP 196 296 296 ASP ASP A . n A 1 197 ASN 197 297 297 ASN ASN A . n A 1 198 THR 198 298 298 THR THR A . n A 1 199 VAL 199 299 299 VAL VAL A . n A 1 200 ASP 200 300 300 ASP ASP A . n A 1 201 ASN 201 301 301 ASN ASN A . n A 1 202 THR 202 302 302 THR THR A . n A 1 203 LYS 203 303 303 LYS LYS A . n A 1 204 PHE 204 304 304 PHE PHE A . n A 1 205 VAL 205 305 305 VAL VAL A . n A 1 206 THR 206 306 306 THR THR A . n A 1 207 SER 207 307 307 SER SER A . n A 1 208 MSE 208 308 308 MSE MSE A . n A 1 209 TYR 209 309 309 TYR TYR A . n A 1 210 ASN 210 310 310 ASN ASN A . n A 1 211 GLU 211 311 311 GLU GLU A . n A 1 212 ILE 212 312 312 ILE ILE A . n A 1 213 LEU 213 313 313 LEU LEU A . n A 1 214 ILE 214 314 314 ILE ILE A . n A 1 215 LEU 215 315 315 LEU LEU A . n A 1 216 GLY 216 316 316 GLY GLY A . n A 1 217 ALA 217 317 317 ALA ALA A . n A 1 218 LYS 218 318 318 LYS LYS A . n A 1 219 LEU 219 319 319 LEU LEU A . n A 1 220 HIS 220 320 320 HIS HIS A . n A 1 221 PRO 221 321 321 PRO PRO A . n A 1 222 THR 222 322 322 THR THR A . n A 1 223 LEU 223 323 323 LEU LEU A . n A 1 224 LYS 224 324 324 LYS LYS A . n A 1 225 LEU 225 325 325 LEU LEU A . n A 1 226 GLU 226 326 326 GLU GLU A . n A 1 227 GLU 227 327 327 GLU GLU A . n A 1 228 ILE 228 328 328 ILE ILE A . n A 1 229 THR 229 329 329 THR THR A . n A 1 230 ASN 230 330 330 ASN ASN A . n A 1 231 ARG 231 331 331 ARG ARG A . n A 1 232 LYS 232 332 332 LYS LYS A . n A 1 233 GLY 233 333 333 GLY GLY A . n A 1 234 LEU 234 334 334 LEU LEU A . n A 1 235 THR 235 335 335 THR THR A . n A 1 236 PRO 236 336 336 PRO PRO A . n A 1 237 LEU 237 337 337 LEU LEU A . n A 1 238 ALA 238 338 338 ALA ALA A . n A 1 239 LEU 239 339 339 LEU LEU A . n A 1 240 ALA 240 340 340 ALA ALA A . n A 1 241 ALA 241 341 341 ALA ALA A . n A 1 242 SER 242 342 342 SER SER A . n A 1 243 SER 243 343 343 SER SER A . n A 1 244 GLY 244 344 344 GLY GLY A . n A 1 245 LYS 245 345 345 LYS LYS A . n A 1 246 ILE 246 346 346 ILE ILE A . n A 1 247 GLY 247 347 347 GLY GLY A . n A 1 248 VAL 248 348 348 VAL VAL A . n A 1 249 LEU 249 349 349 LEU LEU A . n A 1 250 ALA 250 350 350 ALA ALA A . n A 1 251 TYR 251 351 351 TYR TYR A . n A 1 252 ILE 252 352 352 ILE ILE A . n A 1 253 LEU 253 353 353 LEU LEU A . n A 1 254 GLN 254 354 354 GLN GLN A . n A 1 255 ARG 255 355 355 ARG ARG A . n A 1 256 GLU 256 356 356 GLU GLU A . n A 1 257 ILE 257 357 357 ILE ILE A . n A 1 258 HIS 258 358 358 HIS HIS A . n A 1 259 GLU 259 359 ? ? ? A . n A 1 260 PRO 260 360 ? ? ? A . n A 1 261 GLU 261 361 ? ? ? A . n A 1 262 CYS 262 362 ? ? ? A . n A 1 263 ARG 263 363 ? ? ? A . n A 1 264 HIS 264 364 ? ? ? A . n A 1 265 ALA 265 365 ? ? ? A . n A 1 266 ALA 266 366 ? ? ? A . n A 1 267 ALA 267 367 ? ? ? A . n A 1 268 HIS 268 368 ? ? ? A . n A 1 269 HIS 269 369 ? ? ? A . n A 1 270 HIS 270 370 ? ? ? A . n A 1 271 HIS 271 371 ? ? ? A . n A 1 272 HIS 272 372 ? ? ? A . n A 1 273 HIS 273 373 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 62 A MSE 162 ? MET SELENOMETHIONINE 2 A MSE 114 A MSE 214 ? MET SELENOMETHIONINE 3 A MSE 208 A MSE 308 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 24.0981 9.7581 -14.4728 0.4752 0.2421 0.2829 0.2331 0.0041 0.1459 3.4172 6.4183 4.7196 -3.9017 0.7888 -1.5942 -0.0515 0.0498 0.4529 -0.0045 0.1551 0.5508 -1.1717 -0.9588 -0.1036 'X-RAY DIFFRACTION' 2 ? refined 39.0221 -13.2057 -4.7594 0.0496 0.0709 0.0458 0.0481 0.0393 0.0674 3.6334 5.7446 1.0153 -2.1603 -0.7867 0.3384 -0.1396 0.0011 -0.1683 -0.0761 0.1599 0.2955 -0.0109 -0.0657 -0.0202 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 111 A 11 A 236 A 136 ? 'X-RAY DIFFRACTION' ? 2 2 A 237 A 137 A 358 A 258 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOLREP phasing . ? 1 REFMAC refinement 5.2.0019 ? 2 CrystalClear 'data collection' . ? 3 CrystalClear 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 128 ? ? -56.94 -9.35 2 1 LYS A 140 ? ? 49.24 26.69 3 1 PRO A 151 ? ? -59.38 -0.70 4 1 ASN A 170 ? ? -171.04 124.11 5 1 LYS A 200 ? ? -37.43 130.22 6 1 THR A 239 ? ? -39.06 137.20 7 1 ARG A 242 ? ? -149.24 -18.66 8 1 PHE A 247 ? ? -147.46 39.98 9 1 GLU A 249 ? ? 76.08 -56.67 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 LYS A 240 ? ? GLY A 241 ? ? 49.33 2 1 ARG A 242 ? ? PRO A 243 ? ? -54.97 3 1 PRO A 243 ? ? GLY A 244 ? ? 73.55 4 1 GLY A 244 ? ? PHE A 245 ? ? 55.40 5 1 PHE A 247 ? ? GLY A 248 ? ? -100.04 6 1 GLY A 248 ? ? GLU A 249 ? ? 130.53 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 101 ? A SER 1 2 1 Y 1 A VAL 102 ? A VAL 2 3 1 Y 1 A SER 103 ? A SER 3 4 1 Y 1 A ALA 104 ? A ALA 4 5 1 Y 1 A GLY 105 ? A GLY 5 6 1 Y 1 A GLU 106 ? A GLU 6 7 1 Y 1 A LYS 107 ? A LYS 7 8 1 Y 1 A PRO 108 ? A PRO 8 9 1 Y 1 A PRO 109 ? A PRO 9 10 1 Y 1 A ARG 110 ? A ARG 10 11 1 Y 1 A GLU 359 ? A GLU 259 12 1 Y 1 A PRO 360 ? A PRO 260 13 1 Y 1 A GLU 361 ? A GLU 261 14 1 Y 1 A CYS 362 ? A CYS 262 15 1 Y 1 A ARG 363 ? A ARG 263 16 1 Y 1 A HIS 364 ? A HIS 264 17 1 Y 1 A ALA 365 ? A ALA 265 18 1 Y 1 A ALA 366 ? A ALA 266 19 1 Y 1 A ALA 367 ? A ALA 267 20 1 Y 1 A HIS 368 ? A HIS 268 21 1 Y 1 A HIS 369 ? A HIS 269 22 1 Y 1 A HIS 370 ? A HIS 270 23 1 Y 1 A HIS 371 ? A HIS 271 24 1 Y 1 A HIS 372 ? A HIS 272 25 1 Y 1 A HIS 373 ? A HIS 273 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-TRIPHOSPHATE" ATP 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP 1 374 1 ATP ATP A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 31 31 HOH HOH A . C 3 HOH 31 32 32 HOH HOH A . C 3 HOH 32 33 33 HOH HOH A . C 3 HOH 33 34 34 HOH HOH A . C 3 HOH 34 35 35 HOH HOH A . C 3 HOH 35 36 36 HOH HOH A . C 3 HOH 36 37 37 HOH HOH A . C 3 HOH 37 38 38 HOH HOH A . C 3 HOH 38 39 39 HOH HOH A . C 3 HOH 39 40 40 HOH HOH A . C 3 HOH 40 41 41 HOH HOH A . C 3 HOH 41 42 42 HOH HOH A . C 3 HOH 42 43 43 HOH HOH A . C 3 HOH 43 44 44 HOH HOH A . C 3 HOH 44 45 45 HOH HOH A . C 3 HOH 45 46 46 HOH HOH A . C 3 HOH 46 47 47 HOH HOH A . C 3 HOH 47 48 48 HOH HOH A . C 3 HOH 48 49 49 HOH HOH A . C 3 HOH 49 50 50 HOH HOH A . C 3 HOH 50 51 51 HOH HOH A . C 3 HOH 51 52 52 HOH HOH A . C 3 HOH 52 53 53 HOH HOH A . C 3 HOH 53 54 54 HOH HOH A . C 3 HOH 54 55 55 HOH HOH A . C 3 HOH 55 56 56 HOH HOH A . C 3 HOH 56 57 57 HOH HOH A . C 3 HOH 57 58 58 HOH HOH A . C 3 HOH 58 59 59 HOH HOH A . C 3 HOH 59 60 60 HOH HOH A . C 3 HOH 60 61 61 HOH HOH A . C 3 HOH 61 62 62 HOH HOH A . C 3 HOH 62 63 63 HOH HOH A . C 3 HOH 63 64 64 HOH HOH A . C 3 HOH 64 65 65 HOH HOH A . C 3 HOH 65 66 66 HOH HOH A . C 3 HOH 66 67 67 HOH HOH A . C 3 HOH 67 68 68 HOH HOH A . C 3 HOH 68 69 69 HOH HOH A . C 3 HOH 69 70 70 HOH HOH A . C 3 HOH 70 71 71 HOH HOH A . C 3 HOH 71 72 72 HOH HOH A . #