data_2PO2 # _entry.id 2PO2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PO2 pdb_00002po2 10.2210/pdb2po2/pdb RCSB RCSB042591 ? ? WWPDB D_1000042591 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2PNZ 'Crystal structure of the P. abyssi exosome RNase PH ring complexed with UDP and GMP' unspecified PDB 2PO0 'Crystal structure of the P. abyssi exosome RNase PH ring complexed with ADP in double conformation' unspecified PDB 2PO1 'Crystal structure of the P. abyssi exosome RNase PH ring complexed with a single stranded 10-mer poly(A) RNA' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PO2 _pdbx_database_status.recvd_initial_deposition_date 2007-04-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Navarro, M.V.A.S.' 1 'Guimaraes, B.G.' 2 # _citation.id primary _citation.title 'Insights into the mechanism of progressive RNA degradation by the archaeal exosome.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 14120 _citation.page_last 14131 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18353775 _citation.pdbx_database_id_DOI 10.1074/jbc.M801005200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Navarro, M.V.A.S.' 1 ? primary 'Oliveira, C.C.' 2 ? primary 'Zanchin, N.I.' 3 ? primary 'Guimaraes, B.G.' 4 ? # _cell.entry_id 2PO2 _cell.length_a 93.498 _cell.length_b 93.498 _cell.length_c 125.714 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PO2 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable exosome complex exonuclease 1' 27720.305 1 3.1.13.- ? ? ? 2 polymer man 'Probable exosome complex exonuclease 2' 30268.832 1 3.1.13.- ? ? ? 3 non-polymer syn "CYTIDINE-5'-DIPHOSPHATE" 403.176 1 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 5 ? ? ? ? 5 water nat water 18.015 176 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYN MAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVA ACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK IAQEVEGSE ; ;MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYN MAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVA ACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK IAQEVEGSE ; A ? 2 'polypeptide(L)' no no ;GSHMSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNM GVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAA IAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS EGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ ; ;GSHMSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNM GVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAA IAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS EGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 GLU n 1 4 LYS n 1 5 PRO n 1 6 GLU n 1 7 GLY n 1 8 LEU n 1 9 LYS n 1 10 LEU n 1 11 ILE n 1 12 ASP n 1 13 GLU n 1 14 ASN n 1 15 GLY n 1 16 ARG n 1 17 ARG n 1 18 ILE n 1 19 ASP n 1 20 GLY n 1 21 ARG n 1 22 LYS n 1 23 LYS n 1 24 TYR n 1 25 GLU n 1 26 LEU n 1 27 ARG n 1 28 PRO n 1 29 ILE n 1 30 LYS n 1 31 MET n 1 32 GLU n 1 33 VAL n 1 34 GLY n 1 35 VAL n 1 36 LEU n 1 37 LYS n 1 38 ASN n 1 39 ALA n 1 40 ASN n 1 41 GLY n 1 42 SER n 1 43 ALA n 1 44 TYR n 1 45 ILE n 1 46 GLU n 1 47 TRP n 1 48 GLY n 1 49 LYS n 1 50 ASN n 1 51 LYS n 1 52 ILE n 1 53 ILE n 1 54 ALA n 1 55 ALA n 1 56 VAL n 1 57 TYR n 1 58 GLY n 1 59 PRO n 1 60 ARG n 1 61 GLU n 1 62 LEU n 1 63 HIS n 1 64 PRO n 1 65 LYS n 1 66 HIS n 1 67 LEU n 1 68 GLN n 1 69 ARG n 1 70 PRO n 1 71 ASP n 1 72 ARG n 1 73 ALA n 1 74 ILE n 1 75 LEU n 1 76 ARG n 1 77 VAL n 1 78 ARG n 1 79 TYR n 1 80 ASN n 1 81 MET n 1 82 ALA n 1 83 PRO n 1 84 PHE n 1 85 SER n 1 86 VAL n 1 87 GLU n 1 88 GLU n 1 89 ARG n 1 90 LYS n 1 91 LYS n 1 92 PRO n 1 93 GLY n 1 94 PRO n 1 95 ASP n 1 96 ARG n 1 97 ARG n 1 98 SER n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 SER n 1 103 LYS n 1 104 VAL n 1 105 ILE n 1 106 LYS n 1 107 GLY n 1 108 ALA n 1 109 LEU n 1 110 GLU n 1 111 PRO n 1 112 ALA n 1 113 LEU n 1 114 ILE n 1 115 LEU n 1 116 GLU n 1 117 MET n 1 118 PHE n 1 119 PRO n 1 120 ARG n 1 121 THR n 1 122 ALA n 1 123 ILE n 1 124 ASP n 1 125 VAL n 1 126 PHE n 1 127 ILE n 1 128 GLU n 1 129 VAL n 1 130 LEU n 1 131 GLN n 1 132 ALA n 1 133 ASP n 1 134 ALA n 1 135 GLY n 1 136 THR n 1 137 ARG n 1 138 VAL n 1 139 ALA n 1 140 GLY n 1 141 ILE n 1 142 THR n 1 143 ALA n 1 144 ALA n 1 145 SER n 1 146 LEU n 1 147 ALA n 1 148 LEU n 1 149 ALA n 1 150 ASP n 1 151 ALA n 1 152 GLY n 1 153 ILE n 1 154 PRO n 1 155 MET n 1 156 ARG n 1 157 ASP n 1 158 LEU n 1 159 VAL n 1 160 ALA n 1 161 ALA n 1 162 CYS n 1 163 ALA n 1 164 ALA n 1 165 GLY n 1 166 LYS n 1 167 ILE n 1 168 GLU n 1 169 GLY n 1 170 GLU n 1 171 ILE n 1 172 VAL n 1 173 LEU n 1 174 ASP n 1 175 LEU n 1 176 ASN n 1 177 LYS n 1 178 GLU n 1 179 GLU n 1 180 ASP n 1 181 ASN n 1 182 TYR n 1 183 GLY n 1 184 GLU n 1 185 ALA n 1 186 ASP n 1 187 VAL n 1 188 PRO n 1 189 VAL n 1 190 ALA n 1 191 ILE n 1 192 MET n 1 193 PRO n 1 194 LEU n 1 195 LYS n 1 196 ASN n 1 197 ASP n 1 198 ILE n 1 199 THR n 1 200 LEU n 1 201 LEU n 1 202 GLN n 1 203 MET n 1 204 ASP n 1 205 GLY n 1 206 TYR n 1 207 LEU n 1 208 THR n 1 209 LYS n 1 210 ASP n 1 211 GLU n 1 212 PHE n 1 213 ILE n 1 214 GLU n 1 215 ALA n 1 216 VAL n 1 217 LYS n 1 218 LEU n 1 219 ALA n 1 220 ILE n 1 221 LYS n 1 222 GLY n 1 223 ALA n 1 224 LYS n 1 225 ALA n 1 226 VAL n 1 227 TYR n 1 228 GLN n 1 229 LYS n 1 230 GLN n 1 231 ARG n 1 232 GLU n 1 233 ALA n 1 234 LEU n 1 235 LYS n 1 236 GLU n 1 237 LYS n 1 238 TYR n 1 239 LEU n 1 240 LYS n 1 241 ILE n 1 242 ALA n 1 243 GLN n 1 244 GLU n 1 245 VAL n 1 246 GLU n 1 247 GLY n 1 248 SER n 1 249 GLU n 2 1 GLY n 2 2 SER n 2 3 HIS n 2 4 MET n 2 5 SER n 2 6 ASP n 2 7 ASN n 2 8 GLU n 2 9 ILE n 2 10 VAL n 2 11 ALA n 2 12 GLY n 2 13 ILE n 2 14 MET n 2 15 ARG n 2 16 ASP n 2 17 HIS n 2 18 ILE n 2 19 ILE n 2 20 ASN n 2 21 LEU n 2 22 LEU n 2 23 LYS n 2 24 GLU n 2 25 GLY n 2 26 LYS n 2 27 ARG n 2 28 ILE n 2 29 ASP n 2 30 ASP n 2 31 ARG n 2 32 GLY n 2 33 PHE n 2 34 GLU n 2 35 ASP n 2 36 TYR n 2 37 ARG n 2 38 PRO n 2 39 ILE n 2 40 GLU n 2 41 ILE n 2 42 GLU n 2 43 VAL n 2 44 GLY n 2 45 VAL n 2 46 ILE n 2 47 GLU n 2 48 LYS n 2 49 ALA n 2 50 GLU n 2 51 GLY n 2 52 SER n 2 53 ALA n 2 54 LEU n 2 55 VAL n 2 56 LYS n 2 57 LEU n 2 58 GLY n 2 59 SER n 2 60 THR n 2 61 GLN n 2 62 VAL n 2 63 LEU n 2 64 VAL n 2 65 GLY n 2 66 ILE n 2 67 LYS n 2 68 THR n 2 69 SER n 2 70 LEU n 2 71 GLY n 2 72 GLU n 2 73 PRO n 2 74 PHE n 2 75 PRO n 2 76 ASP n 2 77 THR n 2 78 PRO n 2 79 ASN n 2 80 MET n 2 81 GLY n 2 82 VAL n 2 83 MET n 2 84 THR n 2 85 THR n 2 86 ASN n 2 87 VAL n 2 88 GLU n 2 89 LEU n 2 90 VAL n 2 91 PRO n 2 92 LEU n 2 93 ALA n 2 94 SER n 2 95 PRO n 2 96 THR n 2 97 PHE n 2 98 GLU n 2 99 PRO n 2 100 GLY n 2 101 PRO n 2 102 PRO n 2 103 ASP n 2 104 GLU n 2 105 ARG n 2 106 ALA n 2 107 ILE n 2 108 GLU n 2 109 LEU n 2 110 ALA n 2 111 ARG n 2 112 VAL n 2 113 ILE n 2 114 ASP n 2 115 ARG n 2 116 GLY n 2 117 ILE n 2 118 ARG n 2 119 GLU n 2 120 SER n 2 121 LYS n 2 122 ALA n 2 123 LEU n 2 124 ASN n 2 125 LEU n 2 126 GLU n 2 127 LYS n 2 128 MET n 2 129 VAL n 2 130 ILE n 2 131 VAL n 2 132 PRO n 2 133 GLY n 2 134 LYS n 2 135 ILE n 2 136 VAL n 2 137 ARG n 2 138 VAL n 2 139 VAL n 2 140 PHE n 2 141 ILE n 2 142 ASP n 2 143 VAL n 2 144 HIS n 2 145 VAL n 2 146 LEU n 2 147 ASP n 2 148 HIS n 2 149 ASP n 2 150 GLY n 2 151 ASN n 2 152 LEU n 2 153 MET n 2 154 ASP n 2 155 ALA n 2 156 ILE n 2 157 GLY n 2 158 ILE n 2 159 ALA n 2 160 ALA n 2 161 ILE n 2 162 ALA n 2 163 ALA n 2 164 LEU n 2 165 LEU n 2 166 ASN n 2 167 ALA n 2 168 ARG n 2 169 VAL n 2 170 PRO n 2 171 LYS n 2 172 VAL n 2 173 ARG n 2 174 TYR n 2 175 ASN n 2 176 GLU n 2 177 GLU n 2 178 THR n 2 179 GLY n 2 180 GLU n 2 181 VAL n 2 182 GLU n 2 183 THR n 2 184 LEU n 2 185 ASP n 2 186 GLU n 2 187 THR n 2 188 GLU n 2 189 PRO n 2 190 LEU n 2 191 PRO n 2 192 VAL n 2 193 GLU n 2 194 LYS n 2 195 ILE n 2 196 PRO n 2 197 VAL n 2 198 PRO n 2 199 VAL n 2 200 THR n 2 201 PHE n 2 202 ALA n 2 203 LYS n 2 204 ILE n 2 205 GLY n 2 206 ASN n 2 207 ILE n 2 208 LEU n 2 209 VAL n 2 210 VAL n 2 211 ASP n 2 212 PRO n 2 213 SER n 2 214 LEU n 2 215 ASP n 2 216 GLU n 2 217 GLU n 2 218 LEU n 2 219 VAL n 2 220 MET n 2 221 ASP n 2 222 GLY n 2 223 LYS n 2 224 ILE n 2 225 THR n 2 226 ILE n 2 227 THR n 2 228 THR n 2 229 ASP n 2 230 GLU n 2 231 THR n 2 232 GLY n 2 233 HIS n 2 234 ILE n 2 235 SER n 2 236 ALA n 2 237 VAL n 2 238 GLN n 2 239 LYS n 2 240 SER n 2 241 GLU n 2 242 GLY n 2 243 GLY n 2 244 ALA n 2 245 PHE n 2 246 LYS n 2 247 LEU n 2 248 GLU n 2 249 GLU n 2 250 VAL n 2 251 MET n 2 252 TYR n 2 253 ALA n 2 254 VAL n 2 255 GLU n 2 256 THR n 2 257 ALA n 2 258 PHE n 2 259 LYS n 2 260 LYS n 2 261 ALA n 2 262 GLU n 2 263 GLU n 2 264 ILE n 2 265 ARG n 2 266 LYS n 2 267 LEU n 2 268 ILE n 2 269 LEU n 2 270 GLU n 2 271 ALA n 2 272 VAL n 2 273 GLU n 2 274 LYS n 2 275 ALA n 2 276 LYS n 2 277 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Pyrococcus Rrp41 ? ? ? ? ? ? 'Pyrococcus abyssi' 29292 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? pET29 ? ? 2 1 sample ? ? ? ? Pyrococcus Rrp42 ? ? ? ? ? ? 'Pyrococcus abyssi' 29292 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? pAE ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ECX1_PYRAB Q9V119 1 ;MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYN MAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVA ACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK IAQEVEGSE ; 1 ? 2 UNP ECX2_PYRAB Q9V118 2 ;MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVM TTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAA LLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGG AFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ ; 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PO2 A 1 ? 249 ? Q9V119 1 ? 249 ? 1 249 2 2 2PO2 B 4 ? 277 ? Q9V118 1 ? 274 ? 1 274 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2PO2 GLY B 1 ? UNP Q9V118 ? ? 'expression tag' -2 1 2 2PO2 SER B 2 ? UNP Q9V118 ? ? 'expression tag' -1 2 2 2PO2 HIS B 3 ? UNP Q9V118 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CDP non-polymer . "CYTIDINE-5'-DIPHOSPHATE" ? 'C9 H15 N3 O11 P2' 403.176 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PO2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '0.1 M Bis-Tris, 45% MPD and 0.1 M LiCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2006-05-20 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.427 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE D03B-MX1' _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline D03B-MX1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.427 # _reflns.entry_id 2PO2 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 43.63 _reflns.number_all 25254 _reflns.number_obs 25053 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.124 _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate 40.3 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 96.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.607 _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4012 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PO2 _refine.ls_number_reflns_obs 23727 _refine.ls_number_reflns_all 23886 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.80 _refine.ls_d_res_high 2.41 _refine.ls_percent_reflns_obs 99.32 _refine.ls_R_factor_obs 0.18603 _refine.ls_R_factor_all 0.18603 _refine.ls_R_factor_R_work 0.18233 _refine.ls_R_factor_R_free 0.25852 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1273 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 36.625 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2PNZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.341 _refine.pdbx_overall_ESU_R_Free 0.265 _refine.overall_SU_ML 0.190 _refine.overall_SU_B 18.254 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3903 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 216 _refine_hist.number_atoms_total 4144 _refine_hist.d_res_high 2.41 _refine_hist.d_res_low 19.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.106 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.593 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.218 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.308 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.579 ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.127 ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.242 ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.324 ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.192 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.41 _refine_ls_shell.d_res_low 2.468 _refine_ls_shell.number_reflns_R_work 1590 _refine_ls_shell.R_factor_R_work 0.23 _refine_ls_shell.percent_reflns_obs 92.82 _refine_ls_shell.R_factor_R_free 0.362 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 91 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1681 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PO2 _struct.title 'Crystal structure of the P. abyssi exosome RNase PH ring complexed with CDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PO2 _struct_keywords.pdbx_keywords hydrolase/hydrolase _struct_keywords.text 'RNase PH, hydrolase-hydrolase COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a hexamer generated from the heterodimer in the asymmetric unit by the operations: -y, x-y+1, z and -x+y-1, -x, z ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 83 ? VAL A 86 ? PRO A 83 VAL A 86 5 ? 4 HELX_P HELX_P2 2 ASP A 95 ? GLU A 110 ? ASP A 95 GLU A 110 1 ? 16 HELX_P HELX_P3 3 PRO A 111 ? LEU A 113 ? PRO A 111 LEU A 113 5 ? 3 HELX_P HELX_P4 4 ILE A 114 ? PHE A 118 ? ILE A 114 PHE A 118 5 ? 5 HELX_P HELX_P5 5 GLY A 135 ? ALA A 151 ? GLY A 135 ALA A 151 1 ? 17 HELX_P HELX_P6 6 ASN A 176 ? GLY A 183 ? ASN A 176 GLY A 183 1 ? 8 HELX_P HELX_P7 7 THR A 208 ? ILE A 241 ? THR A 208 ILE A 241 1 ? 34 HELX_P HELX_P8 8 GLY B 12 ? GLU B 24 ? GLY B 9 GLU B 21 1 ? 13 HELX_P HELX_P9 9 PRO B 91 ? SER B 94 ? PRO B 88 SER B 91 5 ? 4 HELX_P HELX_P10 10 ASP B 103 ? SER B 120 ? ASP B 100 SER B 117 1 ? 18 HELX_P HELX_P11 11 ASN B 124 ? LYS B 127 ? ASN B 121 LYS B 124 5 ? 4 HELX_P HELX_P12 12 ASN B 151 ? ALA B 167 ? ASN B 148 ALA B 164 1 ? 17 HELX_P HELX_P13 13 SER B 213 ? MET B 220 ? SER B 210 MET B 217 1 ? 8 HELX_P HELX_P14 14 LYS B 246 ? ALA B 275 ? LYS B 243 ALA B 272 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 13 A . ? GLU 13 A ASN 14 A ? ASN 14 A 1 9.29 2 ASN 14 A . ? ASN 14 A GLY 15 A ? GLY 15 A 1 1.80 3 TYR 57 A . ? TYR 57 A GLY 58 A ? GLY 58 A 1 -15.35 4 GLY 58 A . ? GLY 58 A PRO 59 A ? PRO 59 A 1 9.39 5 HIS 63 A . ? HIS 63 A PRO 64 A ? PRO 64 A 1 11.59 6 GLN 243 A . ? GLN 243 A GLU 244 A ? GLU 244 A 1 11.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 4 ? D ? 5 ? E ? 5 ? F ? 2 ? G ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 29 ? VAL A 33 ? ILE A 29 VAL A 33 A 2 GLY A 41 ? TRP A 47 ? GLY A 41 TRP A 47 A 3 ASN A 50 ? GLU A 61 ? ASN A 50 GLU A 61 A 4 THR A 121 ? GLN A 131 ? THR A 121 GLN A 131 A 5 ILE A 74 ? MET A 81 ? ILE A 74 MET A 81 B 1 GLU A 170 ? LEU A 173 ? GLU A 170 LEU A 173 B 2 ALA A 160 ? ILE A 167 ? ALA A 160 ILE A 167 B 3 ALA A 185 ? MET A 192 ? ALA A 185 MET A 192 B 4 ASP A 197 ? LEU A 201 ? ASP A 197 LEU A 201 C 1 GLU A 170 ? LEU A 173 ? GLU A 170 LEU A 173 C 2 ALA A 160 ? ILE A 167 ? ALA A 160 ILE A 167 C 3 ALA A 185 ? MET A 192 ? ALA A 185 MET A 192 C 4 ASP A 204 ? GLY A 205 ? ASP A 204 GLY A 205 D 1 ILE B 39 ? VAL B 43 ? ILE B 36 VAL B 40 D 2 GLY B 51 ? LEU B 57 ? GLY B 48 LEU B 54 D 3 THR B 60 ? GLY B 71 ? THR B 57 GLY B 68 D 4 ILE B 135 ? ASP B 147 ? ILE B 132 ASP B 144 D 5 VAL B 82 ? LEU B 89 ? VAL B 79 LEU B 86 E 1 ILE B 39 ? VAL B 43 ? ILE B 36 VAL B 40 E 2 GLY B 51 ? LEU B 57 ? GLY B 48 LEU B 54 E 3 THR B 60 ? GLY B 71 ? THR B 57 GLY B 68 E 4 ILE B 135 ? ASP B 147 ? ILE B 132 ASP B 144 E 5 VAL B 129 ? VAL B 131 ? VAL B 126 VAL B 128 F 1 ARG B 168 ? TYR B 174 ? ARG B 165 TYR B 171 F 2 VAL B 181 ? PRO B 189 ? VAL B 178 PRO B 186 G 1 ILE B 207 ? VAL B 210 ? ILE B 204 VAL B 207 G 2 VAL B 197 ? ILE B 204 ? VAL B 194 ILE B 201 G 3 GLY B 222 ? THR B 228 ? GLY B 219 THR B 225 G 4 ILE B 234 ? SER B 240 ? ILE B 231 SER B 237 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 30 ? N LYS A 30 O GLU A 46 ? O GLU A 46 A 2 3 N GLY A 41 ? N GLY A 41 O VAL A 56 ? O VAL A 56 A 3 4 N TYR A 57 ? N TYR A 57 O ASP A 124 ? O ASP A 124 A 4 5 O ILE A 123 ? O ILE A 123 N ILE A 74 ? N ILE A 74 B 1 2 O VAL A 172 ? O VAL A 172 N GLY A 165 ? N GLY A 165 B 2 3 N ALA A 160 ? N ALA A 160 O ILE A 191 ? O ILE A 191 B 3 4 N ALA A 190 ? N ALA A 190 O LEU A 200 ? O LEU A 200 C 1 2 O VAL A 172 ? O VAL A 172 N GLY A 165 ? N GLY A 165 C 2 3 N ALA A 160 ? N ALA A 160 O ILE A 191 ? O ILE A 191 C 3 4 N ASP A 186 ? N ASP A 186 O ASP A 204 ? O ASP A 204 D 1 2 N GLU B 42 ? N GLU B 39 O LEU B 54 ? O LEU B 51 D 2 3 N GLY B 51 ? N GLY B 48 O ILE B 66 ? O ILE B 63 D 3 4 N LEU B 63 ? N LEU B 60 O HIS B 144 ? O HIS B 141 D 4 5 O VAL B 139 ? O VAL B 136 N VAL B 82 ? N VAL B 79 E 1 2 N GLU B 42 ? N GLU B 39 O LEU B 54 ? O LEU B 51 E 2 3 N GLY B 51 ? N GLY B 48 O ILE B 66 ? O ILE B 63 E 3 4 N LEU B 63 ? N LEU B 60 O HIS B 144 ? O HIS B 141 E 4 5 O ILE B 135 ? O ILE B 132 N VAL B 131 ? N VAL B 128 F 1 2 N VAL B 169 ? N VAL B 166 O GLU B 188 ? O GLU B 185 G 1 2 O ILE B 207 ? O ILE B 204 N ILE B 204 ? N ILE B 201 G 2 3 N PHE B 201 ? N PHE B 198 O ILE B 224 ? O ILE B 221 G 3 4 N THR B 227 ? N THR B 224 O ALA B 236 ? O ALA B 233 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CDP 250 ? 12 'BINDING SITE FOR RESIDUE CDP A 250' AC2 Software A MPD 251 ? 6 'BINDING SITE FOR RESIDUE MPD A 251' AC3 Software B MPD 280 ? 5 'BINDING SITE FOR RESIDUE MPD B 280' AC4 Software B MPD 281 ? 4 'BINDING SITE FOR RESIDUE MPD B 281' AC5 Software B MPD 282 ? 3 'BINDING SITE FOR RESIDUE MPD B 282' AC6 Software A MPD 283 ? 5 'BINDING SITE FOR RESIDUE MPD A 283' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 ARG A 97 ? ARG A 97 . ? 1_555 ? 2 AC1 12 ALA A 132 ? ALA A 132 . ? 1_555 ? 3 AC1 12 ASP A 133 ? ASP A 133 . ? 1_555 ? 4 AC1 12 ALA A 134 ? ALA A 134 . ? 1_555 ? 5 AC1 12 GLY A 135 ? GLY A 135 . ? 1_555 ? 6 AC1 12 THR A 136 ? THR A 136 . ? 1_555 ? 7 AC1 12 ARG A 137 ? ARG A 137 . ? 1_555 ? 8 AC1 12 ASP A 180 ? ASP A 180 . ? 1_555 ? 9 AC1 12 ASP A 186 ? ASP A 186 . ? 1_555 ? 10 AC1 12 HOH I . ? HOH A 285 . ? 1_555 ? 11 AC1 12 HOH I . ? HOH A 312 . ? 1_555 ? 12 AC1 12 HOH I . ? HOH A 337 . ? 1_555 ? 13 AC2 6 ASP A 180 ? ASP A 180 . ? 1_555 ? 14 AC2 6 ASN A 181 ? ASN A 181 . ? 1_555 ? 15 AC2 6 GLY A 183 ? GLY A 183 . ? 1_555 ? 16 AC2 6 ALA A 185 ? ALA A 185 . ? 1_555 ? 17 AC2 6 GLY A 205 ? GLY A 205 . ? 1_555 ? 18 AC2 6 GLU B 119 ? GLU B 116 . ? 2_565 ? 19 AC3 5 LEU B 165 ? LEU B 162 . ? 1_555 ? 20 AC3 5 GLU B 193 ? GLU B 190 . ? 1_555 ? 21 AC3 5 LYS B 194 ? LYS B 191 . ? 1_555 ? 22 AC3 5 GLU B 230 ? GLU B 227 . ? 1_555 ? 23 AC3 5 LEU B 269 ? LEU B 266 . ? 1_555 ? 24 AC4 4 TYR A 24 ? TYR A 24 . ? 2_455 ? 25 AC4 4 LEU A 173 ? LEU A 173 . ? 2_455 ? 26 AC4 4 LYS A 221 ? LYS A 221 . ? 2_455 ? 27 AC4 4 LYS B 259 ? LYS B 256 . ? 1_555 ? 28 AC5 3 ASN B 206 ? ASN B 203 . ? 1_555 ? 29 AC5 3 LEU B 208 ? LEU B 205 . ? 1_555 ? 30 AC5 3 TYR B 252 ? TYR B 249 . ? 1_555 ? 31 AC6 5 TYR A 44 ? TYR A 44 . ? 1_555 ? 32 AC6 5 ILE A 53 ? ILE A 53 . ? 1_555 ? 33 AC6 5 LEU B 54 ? LEU B 51 . ? 1_555 ? 34 AC6 5 LYS B 56 ? LYS B 53 . ? 1_555 ? 35 AC6 5 GLN B 61 ? GLN B 58 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PO2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PO2 _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0.006175 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012350 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007955 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 LEU 8 8 ? ? ? A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 MET 155 155 155 MET MET A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 CYS 162 162 162 CYS CYS A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 ASN 176 176 176 ASN ASN A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 MET 192 192 192 MET MET A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 ILE 198 198 198 ILE ILE A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 GLN 202 202 202 GLN GLN A . n A 1 203 MET 203 203 203 MET MET A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 TYR 206 206 206 TYR TYR A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 THR 208 208 208 THR THR A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 GLU 211 211 211 GLU GLU A . n A 1 212 PHE 212 212 212 PHE PHE A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 GLU 214 214 214 GLU GLU A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 ILE 220 220 220 ILE ILE A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 GLY 222 222 222 GLY GLY A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 VAL 226 226 226 VAL VAL A . n A 1 227 TYR 227 227 227 TYR TYR A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 GLN 230 230 230 GLN GLN A . n A 1 231 ARG 231 231 231 ARG ARG A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 LYS 235 235 235 LYS LYS A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 LEU 239 239 239 LEU LEU A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 GLN 243 243 243 GLN GLN A . n A 1 244 GLU 244 244 244 GLU GLU A . n A 1 245 VAL 245 245 ? ? ? A . n A 1 246 GLU 246 246 ? ? ? A . n A 1 247 GLY 247 247 ? ? ? A . n A 1 248 SER 248 248 ? ? ? A . n A 1 249 GLU 249 249 ? ? ? A . n B 2 1 GLY 1 -2 ? ? ? B . n B 2 2 SER 2 -1 ? ? ? B . n B 2 3 HIS 3 0 ? ? ? B . n B 2 4 MET 4 1 ? ? ? B . n B 2 5 SER 5 2 ? ? ? B . n B 2 6 ASP 6 3 ? ? ? B . n B 2 7 ASN 7 4 ? ? ? B . n B 2 8 GLU 8 5 ? ? ? B . n B 2 9 ILE 9 6 ? ? ? B . n B 2 10 VAL 10 7 ? ? ? B . n B 2 11 ALA 11 8 8 ALA ALA B . n B 2 12 GLY 12 9 9 GLY GLY B . n B 2 13 ILE 13 10 10 ILE ILE B . n B 2 14 MET 14 11 11 MET MET B . n B 2 15 ARG 15 12 12 ARG ARG B . n B 2 16 ASP 16 13 13 ASP ASP B . n B 2 17 HIS 17 14 14 HIS HIS B . n B 2 18 ILE 18 15 15 ILE ILE B . n B 2 19 ILE 19 16 16 ILE ILE B . n B 2 20 ASN 20 17 17 ASN ASN B . n B 2 21 LEU 21 18 18 LEU LEU B . n B 2 22 LEU 22 19 19 LEU LEU B . n B 2 23 LYS 23 20 20 LYS LYS B . n B 2 24 GLU 24 21 21 GLU GLU B . n B 2 25 GLY 25 22 22 GLY GLY B . n B 2 26 LYS 26 23 23 LYS LYS B . n B 2 27 ARG 27 24 24 ARG ARG B . n B 2 28 ILE 28 25 25 ILE ILE B . n B 2 29 ASP 29 26 26 ASP ASP B . n B 2 30 ASP 30 27 27 ASP ASP B . n B 2 31 ARG 31 28 28 ARG ARG B . n B 2 32 GLY 32 29 29 GLY GLY B . n B 2 33 PHE 33 30 30 PHE PHE B . n B 2 34 GLU 34 31 31 GLU GLU B . n B 2 35 ASP 35 32 32 ASP ASP B . n B 2 36 TYR 36 33 33 TYR TYR B . n B 2 37 ARG 37 34 34 ARG ARG B . n B 2 38 PRO 38 35 35 PRO PRO B . n B 2 39 ILE 39 36 36 ILE ILE B . n B 2 40 GLU 40 37 37 GLU GLU B . n B 2 41 ILE 41 38 38 ILE ILE B . n B 2 42 GLU 42 39 39 GLU GLU B . n B 2 43 VAL 43 40 40 VAL VAL B . n B 2 44 GLY 44 41 41 GLY GLY B . n B 2 45 VAL 45 42 42 VAL VAL B . n B 2 46 ILE 46 43 43 ILE ILE B . n B 2 47 GLU 47 44 44 GLU GLU B . n B 2 48 LYS 48 45 45 LYS LYS B . n B 2 49 ALA 49 46 46 ALA ALA B . n B 2 50 GLU 50 47 47 GLU GLU B . n B 2 51 GLY 51 48 48 GLY GLY B . n B 2 52 SER 52 49 49 SER SER B . n B 2 53 ALA 53 50 50 ALA ALA B . n B 2 54 LEU 54 51 51 LEU LEU B . n B 2 55 VAL 55 52 52 VAL VAL B . n B 2 56 LYS 56 53 53 LYS LYS B . n B 2 57 LEU 57 54 54 LEU LEU B . n B 2 58 GLY 58 55 55 GLY GLY B . n B 2 59 SER 59 56 56 SER SER B . n B 2 60 THR 60 57 57 THR THR B . n B 2 61 GLN 61 58 58 GLN GLN B . n B 2 62 VAL 62 59 59 VAL VAL B . n B 2 63 LEU 63 60 60 LEU LEU B . n B 2 64 VAL 64 61 61 VAL VAL B . n B 2 65 GLY 65 62 62 GLY GLY B . n B 2 66 ILE 66 63 63 ILE ILE B . n B 2 67 LYS 67 64 64 LYS LYS B . n B 2 68 THR 68 65 65 THR THR B . n B 2 69 SER 69 66 66 SER SER B . n B 2 70 LEU 70 67 67 LEU LEU B . n B 2 71 GLY 71 68 68 GLY GLY B . n B 2 72 GLU 72 69 69 GLU GLU B . n B 2 73 PRO 73 70 70 PRO PRO B . n B 2 74 PHE 74 71 71 PHE PHE B . n B 2 75 PRO 75 72 72 PRO PRO B . n B 2 76 ASP 76 73 73 ASP ASP B . n B 2 77 THR 77 74 74 THR THR B . n B 2 78 PRO 78 75 75 PRO PRO B . n B 2 79 ASN 79 76 76 ASN ASN B . n B 2 80 MET 80 77 77 MET MET B . n B 2 81 GLY 81 78 78 GLY GLY B . n B 2 82 VAL 82 79 79 VAL VAL B . n B 2 83 MET 83 80 80 MET MET B . n B 2 84 THR 84 81 81 THR THR B . n B 2 85 THR 85 82 82 THR THR B . n B 2 86 ASN 86 83 83 ASN ASN B . n B 2 87 VAL 87 84 84 VAL VAL B . n B 2 88 GLU 88 85 85 GLU GLU B . n B 2 89 LEU 89 86 86 LEU LEU B . n B 2 90 VAL 90 87 87 VAL VAL B . n B 2 91 PRO 91 88 88 PRO PRO B . n B 2 92 LEU 92 89 89 LEU LEU B . n B 2 93 ALA 93 90 90 ALA ALA B . n B 2 94 SER 94 91 91 SER SER B . n B 2 95 PRO 95 92 92 PRO PRO B . n B 2 96 THR 96 93 93 THR THR B . n B 2 97 PHE 97 94 94 PHE PHE B . n B 2 98 GLU 98 95 95 GLU GLU B . n B 2 99 PRO 99 96 96 PRO PRO B . n B 2 100 GLY 100 97 97 GLY GLY B . n B 2 101 PRO 101 98 98 PRO PRO B . n B 2 102 PRO 102 99 99 PRO PRO B . n B 2 103 ASP 103 100 100 ASP ASP B . n B 2 104 GLU 104 101 101 GLU GLU B . n B 2 105 ARG 105 102 102 ARG ARG B . n B 2 106 ALA 106 103 103 ALA ALA B . n B 2 107 ILE 107 104 104 ILE ILE B . n B 2 108 GLU 108 105 105 GLU GLU B . n B 2 109 LEU 109 106 106 LEU LEU B . n B 2 110 ALA 110 107 107 ALA ALA B . n B 2 111 ARG 111 108 108 ARG ARG B . n B 2 112 VAL 112 109 109 VAL VAL B . n B 2 113 ILE 113 110 110 ILE ILE B . n B 2 114 ASP 114 111 111 ASP ASP B . n B 2 115 ARG 115 112 112 ARG ARG B . n B 2 116 GLY 116 113 113 GLY GLY B . n B 2 117 ILE 117 114 114 ILE ILE B . n B 2 118 ARG 118 115 115 ARG ARG B . n B 2 119 GLU 119 116 116 GLU GLU B . n B 2 120 SER 120 117 117 SER SER B . n B 2 121 LYS 121 118 118 LYS LYS B . n B 2 122 ALA 122 119 119 ALA ALA B . n B 2 123 LEU 123 120 120 LEU LEU B . n B 2 124 ASN 124 121 121 ASN ASN B . n B 2 125 LEU 125 122 122 LEU LEU B . n B 2 126 GLU 126 123 123 GLU GLU B . n B 2 127 LYS 127 124 124 LYS LYS B . n B 2 128 MET 128 125 125 MET MET B . n B 2 129 VAL 129 126 126 VAL VAL B . n B 2 130 ILE 130 127 127 ILE ILE B . n B 2 131 VAL 131 128 128 VAL VAL B . n B 2 132 PRO 132 129 129 PRO PRO B . n B 2 133 GLY 133 130 130 GLY GLY B . n B 2 134 LYS 134 131 131 LYS LYS B . n B 2 135 ILE 135 132 132 ILE ILE B . n B 2 136 VAL 136 133 133 VAL VAL B . n B 2 137 ARG 137 134 134 ARG ARG B . n B 2 138 VAL 138 135 135 VAL VAL B . n B 2 139 VAL 139 136 136 VAL VAL B . n B 2 140 PHE 140 137 137 PHE PHE B . n B 2 141 ILE 141 138 138 ILE ILE B . n B 2 142 ASP 142 139 139 ASP ASP B . n B 2 143 VAL 143 140 140 VAL VAL B . n B 2 144 HIS 144 141 141 HIS HIS B . n B 2 145 VAL 145 142 142 VAL VAL B . n B 2 146 LEU 146 143 143 LEU LEU B . n B 2 147 ASP 147 144 144 ASP ASP B . n B 2 148 HIS 148 145 145 HIS HIS B . n B 2 149 ASP 149 146 146 ASP ASP B . n B 2 150 GLY 150 147 147 GLY GLY B . n B 2 151 ASN 151 148 148 ASN ASN B . n B 2 152 LEU 152 149 149 LEU LEU B . n B 2 153 MET 153 150 150 MET MET B . n B 2 154 ASP 154 151 151 ASP ASP B . n B 2 155 ALA 155 152 152 ALA ALA B . n B 2 156 ILE 156 153 153 ILE ILE B . n B 2 157 GLY 157 154 154 GLY GLY B . n B 2 158 ILE 158 155 155 ILE ILE B . n B 2 159 ALA 159 156 156 ALA ALA B . n B 2 160 ALA 160 157 157 ALA ALA B . n B 2 161 ILE 161 158 158 ILE ILE B . n B 2 162 ALA 162 159 159 ALA ALA B . n B 2 163 ALA 163 160 160 ALA ALA B . n B 2 164 LEU 164 161 161 LEU LEU B . n B 2 165 LEU 165 162 162 LEU LEU B . n B 2 166 ASN 166 163 163 ASN ASN B . n B 2 167 ALA 167 164 164 ALA ALA B . n B 2 168 ARG 168 165 165 ARG ARG B . n B 2 169 VAL 169 166 166 VAL VAL B . n B 2 170 PRO 170 167 167 PRO PRO B . n B 2 171 LYS 171 168 168 LYS LYS B . n B 2 172 VAL 172 169 169 VAL VAL B . n B 2 173 ARG 173 170 170 ARG ARG B . n B 2 174 TYR 174 171 171 TYR TYR B . n B 2 175 ASN 175 172 172 ASN ASN B . n B 2 176 GLU 176 173 173 GLU GLU B . n B 2 177 GLU 177 174 174 GLU GLU B . n B 2 178 THR 178 175 175 THR THR B . n B 2 179 GLY 179 176 176 GLY GLY B . n B 2 180 GLU 180 177 177 GLU GLU B . n B 2 181 VAL 181 178 178 VAL VAL B . n B 2 182 GLU 182 179 179 GLU GLU B . n B 2 183 THR 183 180 180 THR THR B . n B 2 184 LEU 184 181 181 LEU LEU B . n B 2 185 ASP 185 182 182 ASP ASP B . n B 2 186 GLU 186 183 183 GLU GLU B . n B 2 187 THR 187 184 184 THR THR B . n B 2 188 GLU 188 185 185 GLU GLU B . n B 2 189 PRO 189 186 186 PRO PRO B . n B 2 190 LEU 190 187 187 LEU LEU B . n B 2 191 PRO 191 188 188 PRO PRO B . n B 2 192 VAL 192 189 189 VAL VAL B . n B 2 193 GLU 193 190 190 GLU GLU B . n B 2 194 LYS 194 191 191 LYS LYS B . n B 2 195 ILE 195 192 192 ILE ILE B . n B 2 196 PRO 196 193 193 PRO PRO B . n B 2 197 VAL 197 194 194 VAL VAL B . n B 2 198 PRO 198 195 195 PRO PRO B . n B 2 199 VAL 199 196 196 VAL VAL B . n B 2 200 THR 200 197 197 THR THR B . n B 2 201 PHE 201 198 198 PHE PHE B . n B 2 202 ALA 202 199 199 ALA ALA B . n B 2 203 LYS 203 200 200 LYS LYS B . n B 2 204 ILE 204 201 201 ILE ILE B . n B 2 205 GLY 205 202 202 GLY GLY B . n B 2 206 ASN 206 203 203 ASN ASN B . n B 2 207 ILE 207 204 204 ILE ILE B . n B 2 208 LEU 208 205 205 LEU LEU B . n B 2 209 VAL 209 206 206 VAL VAL B . n B 2 210 VAL 210 207 207 VAL VAL B . n B 2 211 ASP 211 208 208 ASP ASP B . n B 2 212 PRO 212 209 209 PRO PRO B . n B 2 213 SER 213 210 210 SER SER B . n B 2 214 LEU 214 211 211 LEU LEU B . n B 2 215 ASP 215 212 212 ASP ASP B . n B 2 216 GLU 216 213 213 GLU GLU B . n B 2 217 GLU 217 214 214 GLU GLU B . n B 2 218 LEU 218 215 215 LEU LEU B . n B 2 219 VAL 219 216 216 VAL VAL B . n B 2 220 MET 220 217 217 MET MET B . n B 2 221 ASP 221 218 218 ASP ASP B . n B 2 222 GLY 222 219 219 GLY GLY B . n B 2 223 LYS 223 220 220 LYS LYS B . n B 2 224 ILE 224 221 221 ILE ILE B . n B 2 225 THR 225 222 222 THR THR B . n B 2 226 ILE 226 223 223 ILE ILE B . n B 2 227 THR 227 224 224 THR THR B . n B 2 228 THR 228 225 225 THR THR B . n B 2 229 ASP 229 226 226 ASP ASP B . n B 2 230 GLU 230 227 227 GLU GLU B . n B 2 231 THR 231 228 228 THR THR B . n B 2 232 GLY 232 229 229 GLY GLY B . n B 2 233 HIS 233 230 230 HIS HIS B . n B 2 234 ILE 234 231 231 ILE ILE B . n B 2 235 SER 235 232 232 SER SER B . n B 2 236 ALA 236 233 233 ALA ALA B . n B 2 237 VAL 237 234 234 VAL VAL B . n B 2 238 GLN 238 235 235 GLN GLN B . n B 2 239 LYS 239 236 236 LYS LYS B . n B 2 240 SER 240 237 237 SER SER B . n B 2 241 GLU 241 238 238 GLU GLU B . n B 2 242 GLY 242 239 239 GLY GLY B . n B 2 243 GLY 243 240 240 GLY GLY B . n B 2 244 ALA 244 241 241 ALA ALA B . n B 2 245 PHE 245 242 242 PHE PHE B . n B 2 246 LYS 246 243 243 LYS LYS B . n B 2 247 LEU 247 244 244 LEU LEU B . n B 2 248 GLU 248 245 245 GLU GLU B . n B 2 249 GLU 249 246 246 GLU GLU B . n B 2 250 VAL 250 247 247 VAL VAL B . n B 2 251 MET 251 248 248 MET MET B . n B 2 252 TYR 252 249 249 TYR TYR B . n B 2 253 ALA 253 250 250 ALA ALA B . n B 2 254 VAL 254 251 251 VAL VAL B . n B 2 255 GLU 255 252 252 GLU GLU B . n B 2 256 THR 256 253 253 THR THR B . n B 2 257 ALA 257 254 254 ALA ALA B . n B 2 258 PHE 258 255 255 PHE PHE B . n B 2 259 LYS 259 256 256 LYS LYS B . n B 2 260 LYS 260 257 257 LYS LYS B . n B 2 261 ALA 261 258 258 ALA ALA B . n B 2 262 GLU 262 259 259 GLU GLU B . n B 2 263 GLU 263 260 260 GLU GLU B . n B 2 264 ILE 264 261 261 ILE ILE B . n B 2 265 ARG 265 262 262 ARG ARG B . n B 2 266 LYS 266 263 263 LYS LYS B . n B 2 267 LEU 267 264 264 LEU LEU B . n B 2 268 ILE 268 265 265 ILE ILE B . n B 2 269 LEU 269 266 266 LEU LEU B . n B 2 270 GLU 270 267 267 GLU GLU B . n B 2 271 ALA 271 268 268 ALA ALA B . n B 2 272 VAL 272 269 269 VAL VAL B . n B 2 273 GLU 273 270 270 GLU GLU B . n B 2 274 LYS 274 271 271 LYS LYS B . n B 2 275 ALA 275 272 272 ALA ALA B . n B 2 276 LYS 276 273 273 LYS LYS B . n B 2 277 GLN 277 274 274 GLN GLN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CDP 1 250 249 CDP CDP A . D 4 MPD 1 251 250 MPD MPD A . E 4 MPD 1 283 283 MPD MPD A . F 4 MPD 1 280 280 MPD MPD B . G 4 MPD 1 281 281 MPD MPD B . H 4 MPD 1 282 282 MPD MPD B . I 5 HOH 1 284 5 HOH HOH A . I 5 HOH 2 285 7 HOH HOH A . I 5 HOH 3 286 8 HOH HOH A . I 5 HOH 4 287 9 HOH HOH A . I 5 HOH 5 288 10 HOH HOH A . I 5 HOH 6 289 11 HOH HOH A . I 5 HOH 7 290 14 HOH HOH A . I 5 HOH 8 291 17 HOH HOH A . I 5 HOH 9 292 19 HOH HOH A . I 5 HOH 10 293 20 HOH HOH A . I 5 HOH 11 294 22 HOH HOH A . I 5 HOH 12 295 25 HOH HOH A . I 5 HOH 13 296 27 HOH HOH A . I 5 HOH 14 297 29 HOH HOH A . I 5 HOH 15 298 31 HOH HOH A . I 5 HOH 16 299 32 HOH HOH A . I 5 HOH 17 300 33 HOH HOH A . I 5 HOH 18 301 34 HOH HOH A . I 5 HOH 19 302 39 HOH HOH A . I 5 HOH 20 303 40 HOH HOH A . I 5 HOH 21 304 41 HOH HOH A . I 5 HOH 22 305 43 HOH HOH A . I 5 HOH 23 306 45 HOH HOH A . I 5 HOH 24 307 46 HOH HOH A . I 5 HOH 25 308 47 HOH HOH A . I 5 HOH 26 309 51 HOH HOH A . I 5 HOH 27 310 53 HOH HOH A . I 5 HOH 28 311 54 HOH HOH A . I 5 HOH 29 312 58 HOH HOH A . I 5 HOH 30 313 64 HOH HOH A . I 5 HOH 31 314 65 HOH HOH A . I 5 HOH 32 315 67 HOH HOH A . I 5 HOH 33 316 68 HOH HOH A . I 5 HOH 34 317 71 HOH HOH A . I 5 HOH 35 318 72 HOH HOH A . I 5 HOH 36 319 74 HOH HOH A . I 5 HOH 37 320 77 HOH HOH A . I 5 HOH 38 321 78 HOH HOH A . I 5 HOH 39 322 80 HOH HOH A . I 5 HOH 40 323 81 HOH HOH A . I 5 HOH 41 324 82 HOH HOH A . I 5 HOH 42 325 83 HOH HOH A . I 5 HOH 43 326 85 HOH HOH A . I 5 HOH 44 327 88 HOH HOH A . I 5 HOH 45 328 92 HOH HOH A . I 5 HOH 46 329 93 HOH HOH A . I 5 HOH 47 330 95 HOH HOH A . I 5 HOH 48 331 98 HOH HOH A . I 5 HOH 49 332 99 HOH HOH A . I 5 HOH 50 333 103 HOH HOH A . I 5 HOH 51 334 118 HOH HOH A . I 5 HOH 52 335 119 HOH HOH A . I 5 HOH 53 336 120 HOH HOH A . I 5 HOH 54 337 122 HOH HOH A . I 5 HOH 55 338 125 HOH HOH A . I 5 HOH 56 339 126 HOH HOH A . I 5 HOH 57 340 127 HOH HOH A . I 5 HOH 58 341 133 HOH HOH A . I 5 HOH 59 342 137 HOH HOH A . I 5 HOH 60 343 138 HOH HOH A . I 5 HOH 61 344 141 HOH HOH A . I 5 HOH 62 345 144 HOH HOH A . I 5 HOH 63 346 145 HOH HOH A . I 5 HOH 64 347 147 HOH HOH A . I 5 HOH 65 348 148 HOH HOH A . I 5 HOH 66 349 150 HOH HOH A . I 5 HOH 67 350 152 HOH HOH A . I 5 HOH 68 351 155 HOH HOH A . I 5 HOH 69 352 156 HOH HOH A . I 5 HOH 70 353 164 HOH HOH A . I 5 HOH 71 354 165 HOH HOH A . I 5 HOH 72 355 166 HOH HOH A . I 5 HOH 73 356 167 HOH HOH A . I 5 HOH 74 357 171 HOH HOH A . I 5 HOH 75 358 174 HOH HOH A . I 5 HOH 76 359 176 HOH HOH A . J 5 HOH 1 283 1 HOH HOH B . J 5 HOH 2 284 2 HOH HOH B . J 5 HOH 3 285 3 HOH HOH B . J 5 HOH 4 286 4 HOH HOH B . J 5 HOH 5 287 6 HOH HOH B . J 5 HOH 6 288 12 HOH HOH B . J 5 HOH 7 289 13 HOH HOH B . J 5 HOH 8 290 15 HOH HOH B . J 5 HOH 9 291 16 HOH HOH B . J 5 HOH 10 292 18 HOH HOH B . J 5 HOH 11 293 21 HOH HOH B . J 5 HOH 12 294 23 HOH HOH B . J 5 HOH 13 295 24 HOH HOH B . J 5 HOH 14 296 26 HOH HOH B . J 5 HOH 15 297 28 HOH HOH B . J 5 HOH 16 298 30 HOH HOH B . J 5 HOH 17 299 35 HOH HOH B . J 5 HOH 18 300 36 HOH HOH B . J 5 HOH 19 301 37 HOH HOH B . J 5 HOH 20 302 38 HOH HOH B . J 5 HOH 21 303 42 HOH HOH B . J 5 HOH 22 304 44 HOH HOH B . J 5 HOH 23 305 48 HOH HOH B . J 5 HOH 24 306 49 HOH HOH B . J 5 HOH 25 307 50 HOH HOH B . J 5 HOH 26 308 52 HOH HOH B . J 5 HOH 27 309 55 HOH HOH B . J 5 HOH 28 310 56 HOH HOH B . J 5 HOH 29 311 57 HOH HOH B . J 5 HOH 30 312 59 HOH HOH B . J 5 HOH 31 313 60 HOH HOH B . J 5 HOH 32 314 61 HOH HOH B . J 5 HOH 33 315 62 HOH HOH B . J 5 HOH 34 316 63 HOH HOH B . J 5 HOH 35 317 66 HOH HOH B . J 5 HOH 36 318 69 HOH HOH B . J 5 HOH 37 319 70 HOH HOH B . J 5 HOH 38 320 73 HOH HOH B . J 5 HOH 39 321 75 HOH HOH B . J 5 HOH 40 322 76 HOH HOH B . J 5 HOH 41 323 79 HOH HOH B . J 5 HOH 42 324 84 HOH HOH B . J 5 HOH 43 325 86 HOH HOH B . J 5 HOH 44 326 87 HOH HOH B . J 5 HOH 45 327 89 HOH HOH B . J 5 HOH 46 328 90 HOH HOH B . J 5 HOH 47 329 91 HOH HOH B . J 5 HOH 48 330 94 HOH HOH B . J 5 HOH 49 331 96 HOH HOH B . J 5 HOH 50 332 97 HOH HOH B . J 5 HOH 51 333 100 HOH HOH B . J 5 HOH 52 334 101 HOH HOH B . J 5 HOH 53 335 102 HOH HOH B . J 5 HOH 54 336 104 HOH HOH B . J 5 HOH 55 337 105 HOH HOH B . J 5 HOH 56 338 106 HOH HOH B . J 5 HOH 57 339 107 HOH HOH B . J 5 HOH 58 340 108 HOH HOH B . J 5 HOH 59 341 109 HOH HOH B . J 5 HOH 60 342 110 HOH HOH B . J 5 HOH 61 343 111 HOH HOH B . J 5 HOH 62 344 112 HOH HOH B . J 5 HOH 63 345 113 HOH HOH B . J 5 HOH 64 346 114 HOH HOH B . J 5 HOH 65 347 115 HOH HOH B . J 5 HOH 66 348 116 HOH HOH B . J 5 HOH 67 349 117 HOH HOH B . J 5 HOH 68 350 121 HOH HOH B . J 5 HOH 69 351 123 HOH HOH B . J 5 HOH 70 352 124 HOH HOH B . J 5 HOH 71 353 128 HOH HOH B . J 5 HOH 72 354 129 HOH HOH B . J 5 HOH 73 355 130 HOH HOH B . J 5 HOH 74 356 131 HOH HOH B . J 5 HOH 75 357 132 HOH HOH B . J 5 HOH 76 358 134 HOH HOH B . J 5 HOH 77 359 135 HOH HOH B . J 5 HOH 78 360 136 HOH HOH B . J 5 HOH 79 361 139 HOH HOH B . J 5 HOH 80 362 140 HOH HOH B . J 5 HOH 81 363 142 HOH HOH B . J 5 HOH 82 364 143 HOH HOH B . J 5 HOH 83 365 146 HOH HOH B . J 5 HOH 84 366 149 HOH HOH B . J 5 HOH 85 367 151 HOH HOH B . J 5 HOH 86 368 153 HOH HOH B . J 5 HOH 87 369 154 HOH HOH B . J 5 HOH 88 370 157 HOH HOH B . J 5 HOH 89 371 158 HOH HOH B . J 5 HOH 90 372 159 HOH HOH B . J 5 HOH 91 373 160 HOH HOH B . J 5 HOH 92 374 161 HOH HOH B . J 5 HOH 93 375 162 HOH HOH B . J 5 HOH 94 376 163 HOH HOH B . J 5 HOH 95 377 168 HOH HOH B . J 5 HOH 96 378 169 HOH HOH B . J 5 HOH 97 379 170 HOH HOH B . J 5 HOH 98 380 172 HOH HOH B . J 5 HOH 99 381 173 HOH HOH B . J 5 HOH 100 382 175 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 21990 ? 1 MORE -229.8 ? 1 'SSA (A^2)' 57630 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 -46.7490000000 0.8660254038 -0.5000000000 0.0000000000 80.9716432030 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5000000000 0.8660254038 0.0000000000 -93.4980000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -29.8998 3.4298 -37.5581 -0.0910 -0.1996 -0.0389 0.1036 0.0241 -0.0044 3.9418 1.9655 2.2832 0.1468 0.1262 0.6165 -0.0077 0.0389 -0.2543 0.0145 0.0462 -0.0846 0.4873 0.2536 -0.0385 'X-RAY DIFFRACTION' 2 ? refined -60.5409 2.5841 -30.6802 -0.1097 -0.2133 -0.1529 -0.0831 0.0350 0.0212 2.5637 1.8893 3.6805 0.0746 0.8719 0.0084 0.0392 -0.1300 -0.1372 0.1771 -0.0609 0.0251 0.3734 -0.1616 0.0217 'X-RAY DIFFRACTION' 3 ? refined -47.6192 4.6663 -33.8176 -0.0381 -0.1652 -0.0797 -0.0210 -0.0058 0.0211 2.0040 0.5223 0.4518 -0.0219 -0.0805 0.0786 -0.0557 -0.0688 -0.0256 -0.0045 0.0518 -0.0494 0.2498 -0.0381 0.0039 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 9 A 9 A 250 C 1 ? 'X-RAY DIFFRACTION' ? 2 2 B 8 B 11 B 283 J 1 ? 'X-RAY DIFFRACTION' ? 3 3 A 284 I 1 B 382 J 100 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345dtb 'data collection' . ? 2 XDS 'data reduction' . ? 3 XDS 'data scaling' . ? 4 MOLREP phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 197 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 353 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A LYS 240 ? ? CD A LYS 240 ? ? 1.726 1.520 0.206 0.034 N 2 1 CG B GLU 174 ? ? CD B GLU 174 ? ? 1.751 1.515 0.236 0.015 N 3 1 CD B GLU 174 ? ? OE1 B GLU 174 ? ? 1.432 1.252 0.180 0.011 N 4 1 CD B GLU 174 ? ? OE2 B GLU 174 ? ? 1.357 1.252 0.105 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 97 ? ? CZ A ARG 97 ? ? NH1 A ARG 97 ? ? 125.25 120.30 4.95 0.50 N 2 1 NE A ARG 97 ? ? CZ A ARG 97 ? ? NH2 A ARG 97 ? ? 114.36 120.30 -5.94 0.50 N 3 1 CA B LEU 89 ? ? CB B LEU 89 ? ? CG B LEU 89 ? ? 135.79 115.30 20.49 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 13 ? ? 143.17 124.92 2 1 GLU A 61 ? ? -34.72 121.38 3 1 LYS A 65 ? ? -58.81 7.69 4 1 ARG A 89 ? ? -37.86 114.25 5 1 ARG A 120 ? ? 84.78 9.51 6 1 ASP A 133 ? ? -158.91 47.15 7 1 ALA A 134 ? ? 70.41 147.69 8 1 CYS A 162 ? ? -170.98 148.67 9 1 ASP A 174 ? ? 62.07 78.89 10 1 ALA A 242 ? ? -67.13 54.59 11 1 LYS B 131 ? ? -141.72 -45.44 12 1 ASP B 144 ? ? -171.33 112.57 13 1 GLU B 173 ? ? -49.40 -11.96 14 1 GLU B 238 ? ? 66.40 -162.93 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 9 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LEU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 10 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -34.09 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C4 ? A MPD 251 ? 'WRONG HAND' . 2 1 C4 ? A MPD 283 ? 'WRONG HAND' . 3 1 C4 ? B MPD 282 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A MET 2 ? A MET 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A LEU 8 ? A LEU 8 9 1 Y 1 A VAL 245 ? A VAL 245 10 1 Y 1 A GLU 246 ? A GLU 246 11 1 Y 1 A GLY 247 ? A GLY 247 12 1 Y 1 A SER 248 ? A SER 248 13 1 Y 1 A GLU 249 ? A GLU 249 14 1 Y 1 B GLY -2 ? B GLY 1 15 1 Y 1 B SER -1 ? B SER 2 16 1 Y 1 B HIS 0 ? B HIS 3 17 1 Y 1 B MET 1 ? B MET 4 18 1 Y 1 B SER 2 ? B SER 5 19 1 Y 1 B ASP 3 ? B ASP 6 20 1 Y 1 B ASN 4 ? B ASN 7 21 1 Y 1 B GLU 5 ? B GLU 8 22 1 Y 1 B ILE 6 ? B ILE 9 23 1 Y 1 B VAL 7 ? B VAL 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CDP O3B O N N 74 CDP PB P N N 75 CDP O1B O N N 76 CDP O2B O N N 77 CDP O3A O N N 78 CDP PA P N R 79 CDP O1A O N N 80 CDP O2A O N N 81 CDP "O5'" O N N 82 CDP "C5'" C N N 83 CDP "C4'" C N R 84 CDP "O4'" O N N 85 CDP "C3'" C N S 86 CDP "O3'" O N N 87 CDP "C2'" C N R 88 CDP "O2'" O N N 89 CDP "C1'" C N R 90 CDP N1 N N N 91 CDP C2 C N N 92 CDP O2 O N N 93 CDP N3 N N N 94 CDP C4 C N N 95 CDP N4 N N N 96 CDP C5 C N N 97 CDP C6 C N N 98 CDP "H5'1" H N N 99 CDP "H5'2" H N N 100 CDP "H4'" H N N 101 CDP "H3'" H N N 102 CDP HA H N N 103 CDP "H2'" H N N 104 CDP HB H N N 105 CDP "H1'" H N N 106 CDP H4N1 H N N 107 CDP H4N2 H N N 108 CDP H5 H N N 109 CDP H6 H N N 110 CDP HO1 H N N 111 CDP HO2 H N N 112 CDP HO3 H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 GLN N N N N 128 GLN CA C N S 129 GLN C C N N 130 GLN O O N N 131 GLN CB C N N 132 GLN CG C N N 133 GLN CD C N N 134 GLN OE1 O N N 135 GLN NE2 N N N 136 GLN OXT O N N 137 GLN H H N N 138 GLN H2 H N N 139 GLN HA H N N 140 GLN HB2 H N N 141 GLN HB3 H N N 142 GLN HG2 H N N 143 GLN HG3 H N N 144 GLN HE21 H N N 145 GLN HE22 H N N 146 GLN HXT H N N 147 GLU N N N N 148 GLU CA C N S 149 GLU C C N N 150 GLU O O N N 151 GLU CB C N N 152 GLU CG C N N 153 GLU CD C N N 154 GLU OE1 O N N 155 GLU OE2 O N N 156 GLU OXT O N N 157 GLU H H N N 158 GLU H2 H N N 159 GLU HA H N N 160 GLU HB2 H N N 161 GLU HB3 H N N 162 GLU HG2 H N N 163 GLU HG3 H N N 164 GLU HE2 H N N 165 GLU HXT H N N 166 GLY N N N N 167 GLY CA C N N 168 GLY C C N N 169 GLY O O N N 170 GLY OXT O N N 171 GLY H H N N 172 GLY H2 H N N 173 GLY HA2 H N N 174 GLY HA3 H N N 175 GLY HXT H N N 176 HIS N N N N 177 HIS CA C N S 178 HIS C C N N 179 HIS O O N N 180 HIS CB C N N 181 HIS CG C Y N 182 HIS ND1 N Y N 183 HIS CD2 C Y N 184 HIS CE1 C Y N 185 HIS NE2 N Y N 186 HIS OXT O N N 187 HIS H H N N 188 HIS H2 H N N 189 HIS HA H N N 190 HIS HB2 H N N 191 HIS HB3 H N N 192 HIS HD1 H N N 193 HIS HD2 H N N 194 HIS HE1 H N N 195 HIS HE2 H N N 196 HIS HXT H N N 197 HOH O O N N 198 HOH H1 H N N 199 HOH H2 H N N 200 ILE N N N N 201 ILE CA C N S 202 ILE C C N N 203 ILE O O N N 204 ILE CB C N S 205 ILE CG1 C N N 206 ILE CG2 C N N 207 ILE CD1 C N N 208 ILE OXT O N N 209 ILE H H N N 210 ILE H2 H N N 211 ILE HA H N N 212 ILE HB H N N 213 ILE HG12 H N N 214 ILE HG13 H N N 215 ILE HG21 H N N 216 ILE HG22 H N N 217 ILE HG23 H N N 218 ILE HD11 H N N 219 ILE HD12 H N N 220 ILE HD13 H N N 221 ILE HXT H N N 222 LEU N N N N 223 LEU CA C N S 224 LEU C C N N 225 LEU O O N N 226 LEU CB C N N 227 LEU CG C N N 228 LEU CD1 C N N 229 LEU CD2 C N N 230 LEU OXT O N N 231 LEU H H N N 232 LEU H2 H N N 233 LEU HA H N N 234 LEU HB2 H N N 235 LEU HB3 H N N 236 LEU HG H N N 237 LEU HD11 H N N 238 LEU HD12 H N N 239 LEU HD13 H N N 240 LEU HD21 H N N 241 LEU HD22 H N N 242 LEU HD23 H N N 243 LEU HXT H N N 244 LYS N N N N 245 LYS CA C N S 246 LYS C C N N 247 LYS O O N N 248 LYS CB C N N 249 LYS CG C N N 250 LYS CD C N N 251 LYS CE C N N 252 LYS NZ N N N 253 LYS OXT O N N 254 LYS H H N N 255 LYS H2 H N N 256 LYS HA H N N 257 LYS HB2 H N N 258 LYS HB3 H N N 259 LYS HG2 H N N 260 LYS HG3 H N N 261 LYS HD2 H N N 262 LYS HD3 H N N 263 LYS HE2 H N N 264 LYS HE3 H N N 265 LYS HZ1 H N N 266 LYS HZ2 H N N 267 LYS HZ3 H N N 268 LYS HXT H N N 269 MET N N N N 270 MET CA C N S 271 MET C C N N 272 MET O O N N 273 MET CB C N N 274 MET CG C N N 275 MET SD S N N 276 MET CE C N N 277 MET OXT O N N 278 MET H H N N 279 MET H2 H N N 280 MET HA H N N 281 MET HB2 H N N 282 MET HB3 H N N 283 MET HG2 H N N 284 MET HG3 H N N 285 MET HE1 H N N 286 MET HE2 H N N 287 MET HE3 H N N 288 MET HXT H N N 289 MPD C1 C N N 290 MPD C2 C N N 291 MPD O2 O N N 292 MPD CM C N N 293 MPD C3 C N N 294 MPD C4 C N S 295 MPD O4 O N N 296 MPD C5 C N N 297 MPD H11 H N N 298 MPD H12 H N N 299 MPD H13 H N N 300 MPD HO2 H N N 301 MPD HM1 H N N 302 MPD HM2 H N N 303 MPD HM3 H N N 304 MPD H31 H N N 305 MPD H32 H N N 306 MPD H4 H N N 307 MPD HO4 H N N 308 MPD H51 H N N 309 MPD H52 H N N 310 MPD H53 H N N 311 PHE N N N N 312 PHE CA C N S 313 PHE C C N N 314 PHE O O N N 315 PHE CB C N N 316 PHE CG C Y N 317 PHE CD1 C Y N 318 PHE CD2 C Y N 319 PHE CE1 C Y N 320 PHE CE2 C Y N 321 PHE CZ C Y N 322 PHE OXT O N N 323 PHE H H N N 324 PHE H2 H N N 325 PHE HA H N N 326 PHE HB2 H N N 327 PHE HB3 H N N 328 PHE HD1 H N N 329 PHE HD2 H N N 330 PHE HE1 H N N 331 PHE HE2 H N N 332 PHE HZ H N N 333 PHE HXT H N N 334 PRO N N N N 335 PRO CA C N S 336 PRO C C N N 337 PRO O O N N 338 PRO CB C N N 339 PRO CG C N N 340 PRO CD C N N 341 PRO OXT O N N 342 PRO H H N N 343 PRO HA H N N 344 PRO HB2 H N N 345 PRO HB3 H N N 346 PRO HG2 H N N 347 PRO HG3 H N N 348 PRO HD2 H N N 349 PRO HD3 H N N 350 PRO HXT H N N 351 SER N N N N 352 SER CA C N S 353 SER C C N N 354 SER O O N N 355 SER CB C N N 356 SER OG O N N 357 SER OXT O N N 358 SER H H N N 359 SER H2 H N N 360 SER HA H N N 361 SER HB2 H N N 362 SER HB3 H N N 363 SER HG H N N 364 SER HXT H N N 365 THR N N N N 366 THR CA C N S 367 THR C C N N 368 THR O O N N 369 THR CB C N R 370 THR OG1 O N N 371 THR CG2 C N N 372 THR OXT O N N 373 THR H H N N 374 THR H2 H N N 375 THR HA H N N 376 THR HB H N N 377 THR HG1 H N N 378 THR HG21 H N N 379 THR HG22 H N N 380 THR HG23 H N N 381 THR HXT H N N 382 TRP N N N N 383 TRP CA C N S 384 TRP C C N N 385 TRP O O N N 386 TRP CB C N N 387 TRP CG C Y N 388 TRP CD1 C Y N 389 TRP CD2 C Y N 390 TRP NE1 N Y N 391 TRP CE2 C Y N 392 TRP CE3 C Y N 393 TRP CZ2 C Y N 394 TRP CZ3 C Y N 395 TRP CH2 C Y N 396 TRP OXT O N N 397 TRP H H N N 398 TRP H2 H N N 399 TRP HA H N N 400 TRP HB2 H N N 401 TRP HB3 H N N 402 TRP HD1 H N N 403 TRP HE1 H N N 404 TRP HE3 H N N 405 TRP HZ2 H N N 406 TRP HZ3 H N N 407 TRP HH2 H N N 408 TRP HXT H N N 409 TYR N N N N 410 TYR CA C N S 411 TYR C C N N 412 TYR O O N N 413 TYR CB C N N 414 TYR CG C Y N 415 TYR CD1 C Y N 416 TYR CD2 C Y N 417 TYR CE1 C Y N 418 TYR CE2 C Y N 419 TYR CZ C Y N 420 TYR OH O N N 421 TYR OXT O N N 422 TYR H H N N 423 TYR H2 H N N 424 TYR HA H N N 425 TYR HB2 H N N 426 TYR HB3 H N N 427 TYR HD1 H N N 428 TYR HD2 H N N 429 TYR HE1 H N N 430 TYR HE2 H N N 431 TYR HH H N N 432 TYR HXT H N N 433 VAL N N N N 434 VAL CA C N S 435 VAL C C N N 436 VAL O O N N 437 VAL CB C N N 438 VAL CG1 C N N 439 VAL CG2 C N N 440 VAL OXT O N N 441 VAL H H N N 442 VAL H2 H N N 443 VAL HA H N N 444 VAL HB H N N 445 VAL HG11 H N N 446 VAL HG12 H N N 447 VAL HG13 H N N 448 VAL HG21 H N N 449 VAL HG22 H N N 450 VAL HG23 H N N 451 VAL HXT H N N 452 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CDP O3B PB sing N N 70 CDP PB O1B doub N N 71 CDP PB O2B sing N N 72 CDP PB O3A sing N N 73 CDP O3A PA sing N N 74 CDP PA O1A doub N N 75 CDP PA O2A sing N N 76 CDP PA "O5'" sing N N 77 CDP "O5'" "C5'" sing N N 78 CDP "C5'" "C4'" sing N N 79 CDP "C5'" "H5'1" sing N N 80 CDP "C5'" "H5'2" sing N N 81 CDP "C4'" "O4'" sing N N 82 CDP "C4'" "C3'" sing N N 83 CDP "C4'" "H4'" sing N N 84 CDP "O4'" "C1'" sing N N 85 CDP "C3'" "O3'" sing N N 86 CDP "C3'" "C2'" sing N N 87 CDP "C3'" "H3'" sing N N 88 CDP "O3'" HA sing N N 89 CDP "C2'" "O2'" sing N N 90 CDP "C2'" "C1'" sing N N 91 CDP "C2'" "H2'" sing N N 92 CDP "O2'" HB sing N N 93 CDP "C1'" N1 sing N N 94 CDP "C1'" "H1'" sing N N 95 CDP N1 C2 sing N N 96 CDP N1 C6 sing N N 97 CDP C2 O2 doub N N 98 CDP C2 N3 sing N N 99 CDP N3 C4 doub N N 100 CDP C4 N4 sing N N 101 CDP C4 C5 sing N N 102 CDP N4 H4N1 sing N N 103 CDP N4 H4N2 sing N N 104 CDP C5 C6 doub N N 105 CDP C5 H5 sing N N 106 CDP C6 H6 sing N N 107 CDP HO1 O2A sing N N 108 CDP HO2 O2B sing N N 109 CDP HO3 O3B sing N N 110 CYS N CA sing N N 111 CYS N H sing N N 112 CYS N H2 sing N N 113 CYS CA C sing N N 114 CYS CA CB sing N N 115 CYS CA HA sing N N 116 CYS C O doub N N 117 CYS C OXT sing N N 118 CYS CB SG sing N N 119 CYS CB HB2 sing N N 120 CYS CB HB3 sing N N 121 CYS SG HG sing N N 122 CYS OXT HXT sing N N 123 GLN N CA sing N N 124 GLN N H sing N N 125 GLN N H2 sing N N 126 GLN CA C sing N N 127 GLN CA CB sing N N 128 GLN CA HA sing N N 129 GLN C O doub N N 130 GLN C OXT sing N N 131 GLN CB CG sing N N 132 GLN CB HB2 sing N N 133 GLN CB HB3 sing N N 134 GLN CG CD sing N N 135 GLN CG HG2 sing N N 136 GLN CG HG3 sing N N 137 GLN CD OE1 doub N N 138 GLN CD NE2 sing N N 139 GLN NE2 HE21 sing N N 140 GLN NE2 HE22 sing N N 141 GLN OXT HXT sing N N 142 GLU N CA sing N N 143 GLU N H sing N N 144 GLU N H2 sing N N 145 GLU CA C sing N N 146 GLU CA CB sing N N 147 GLU CA HA sing N N 148 GLU C O doub N N 149 GLU C OXT sing N N 150 GLU CB CG sing N N 151 GLU CB HB2 sing N N 152 GLU CB HB3 sing N N 153 GLU CG CD sing N N 154 GLU CG HG2 sing N N 155 GLU CG HG3 sing N N 156 GLU CD OE1 doub N N 157 GLU CD OE2 sing N N 158 GLU OE2 HE2 sing N N 159 GLU OXT HXT sing N N 160 GLY N CA sing N N 161 GLY N H sing N N 162 GLY N H2 sing N N 163 GLY CA C sing N N 164 GLY CA HA2 sing N N 165 GLY CA HA3 sing N N 166 GLY C O doub N N 167 GLY C OXT sing N N 168 GLY OXT HXT sing N N 169 HIS N CA sing N N 170 HIS N H sing N N 171 HIS N H2 sing N N 172 HIS CA C sing N N 173 HIS CA CB sing N N 174 HIS CA HA sing N N 175 HIS C O doub N N 176 HIS C OXT sing N N 177 HIS CB CG sing N N 178 HIS CB HB2 sing N N 179 HIS CB HB3 sing N N 180 HIS CG ND1 sing Y N 181 HIS CG CD2 doub Y N 182 HIS ND1 CE1 doub Y N 183 HIS ND1 HD1 sing N N 184 HIS CD2 NE2 sing Y N 185 HIS CD2 HD2 sing N N 186 HIS CE1 NE2 sing Y N 187 HIS CE1 HE1 sing N N 188 HIS NE2 HE2 sing N N 189 HIS OXT HXT sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 ILE N CA sing N N 193 ILE N H sing N N 194 ILE N H2 sing N N 195 ILE CA C sing N N 196 ILE CA CB sing N N 197 ILE CA HA sing N N 198 ILE C O doub N N 199 ILE C OXT sing N N 200 ILE CB CG1 sing N N 201 ILE CB CG2 sing N N 202 ILE CB HB sing N N 203 ILE CG1 CD1 sing N N 204 ILE CG1 HG12 sing N N 205 ILE CG1 HG13 sing N N 206 ILE CG2 HG21 sing N N 207 ILE CG2 HG22 sing N N 208 ILE CG2 HG23 sing N N 209 ILE CD1 HD11 sing N N 210 ILE CD1 HD12 sing N N 211 ILE CD1 HD13 sing N N 212 ILE OXT HXT sing N N 213 LEU N CA sing N N 214 LEU N H sing N N 215 LEU N H2 sing N N 216 LEU CA C sing N N 217 LEU CA CB sing N N 218 LEU CA HA sing N N 219 LEU C O doub N N 220 LEU C OXT sing N N 221 LEU CB CG sing N N 222 LEU CB HB2 sing N N 223 LEU CB HB3 sing N N 224 LEU CG CD1 sing N N 225 LEU CG CD2 sing N N 226 LEU CG HG sing N N 227 LEU CD1 HD11 sing N N 228 LEU CD1 HD12 sing N N 229 LEU CD1 HD13 sing N N 230 LEU CD2 HD21 sing N N 231 LEU CD2 HD22 sing N N 232 LEU CD2 HD23 sing N N 233 LEU OXT HXT sing N N 234 LYS N CA sing N N 235 LYS N H sing N N 236 LYS N H2 sing N N 237 LYS CA C sing N N 238 LYS CA CB sing N N 239 LYS CA HA sing N N 240 LYS C O doub N N 241 LYS C OXT sing N N 242 LYS CB CG sing N N 243 LYS CB HB2 sing N N 244 LYS CB HB3 sing N N 245 LYS CG CD sing N N 246 LYS CG HG2 sing N N 247 LYS CG HG3 sing N N 248 LYS CD CE sing N N 249 LYS CD HD2 sing N N 250 LYS CD HD3 sing N N 251 LYS CE NZ sing N N 252 LYS CE HE2 sing N N 253 LYS CE HE3 sing N N 254 LYS NZ HZ1 sing N N 255 LYS NZ HZ2 sing N N 256 LYS NZ HZ3 sing N N 257 LYS OXT HXT sing N N 258 MET N CA sing N N 259 MET N H sing N N 260 MET N H2 sing N N 261 MET CA C sing N N 262 MET CA CB sing N N 263 MET CA HA sing N N 264 MET C O doub N N 265 MET C OXT sing N N 266 MET CB CG sing N N 267 MET CB HB2 sing N N 268 MET CB HB3 sing N N 269 MET CG SD sing N N 270 MET CG HG2 sing N N 271 MET CG HG3 sing N N 272 MET SD CE sing N N 273 MET CE HE1 sing N N 274 MET CE HE2 sing N N 275 MET CE HE3 sing N N 276 MET OXT HXT sing N N 277 MPD C1 C2 sing N N 278 MPD C1 H11 sing N N 279 MPD C1 H12 sing N N 280 MPD C1 H13 sing N N 281 MPD C2 O2 sing N N 282 MPD C2 CM sing N N 283 MPD C2 C3 sing N N 284 MPD O2 HO2 sing N N 285 MPD CM HM1 sing N N 286 MPD CM HM2 sing N N 287 MPD CM HM3 sing N N 288 MPD C3 C4 sing N N 289 MPD C3 H31 sing N N 290 MPD C3 H32 sing N N 291 MPD C4 O4 sing N N 292 MPD C4 C5 sing N N 293 MPD C4 H4 sing N N 294 MPD O4 HO4 sing N N 295 MPD C5 H51 sing N N 296 MPD C5 H52 sing N N 297 MPD C5 H53 sing N N 298 PHE N CA sing N N 299 PHE N H sing N N 300 PHE N H2 sing N N 301 PHE CA C sing N N 302 PHE CA CB sing N N 303 PHE CA HA sing N N 304 PHE C O doub N N 305 PHE C OXT sing N N 306 PHE CB CG sing N N 307 PHE CB HB2 sing N N 308 PHE CB HB3 sing N N 309 PHE CG CD1 doub Y N 310 PHE CG CD2 sing Y N 311 PHE CD1 CE1 sing Y N 312 PHE CD1 HD1 sing N N 313 PHE CD2 CE2 doub Y N 314 PHE CD2 HD2 sing N N 315 PHE CE1 CZ doub Y N 316 PHE CE1 HE1 sing N N 317 PHE CE2 CZ sing Y N 318 PHE CE2 HE2 sing N N 319 PHE CZ HZ sing N N 320 PHE OXT HXT sing N N 321 PRO N CA sing N N 322 PRO N CD sing N N 323 PRO N H sing N N 324 PRO CA C sing N N 325 PRO CA CB sing N N 326 PRO CA HA sing N N 327 PRO C O doub N N 328 PRO C OXT sing N N 329 PRO CB CG sing N N 330 PRO CB HB2 sing N N 331 PRO CB HB3 sing N N 332 PRO CG CD sing N N 333 PRO CG HG2 sing N N 334 PRO CG HG3 sing N N 335 PRO CD HD2 sing N N 336 PRO CD HD3 sing N N 337 PRO OXT HXT sing N N 338 SER N CA sing N N 339 SER N H sing N N 340 SER N H2 sing N N 341 SER CA C sing N N 342 SER CA CB sing N N 343 SER CA HA sing N N 344 SER C O doub N N 345 SER C OXT sing N N 346 SER CB OG sing N N 347 SER CB HB2 sing N N 348 SER CB HB3 sing N N 349 SER OG HG sing N N 350 SER OXT HXT sing N N 351 THR N CA sing N N 352 THR N H sing N N 353 THR N H2 sing N N 354 THR CA C sing N N 355 THR CA CB sing N N 356 THR CA HA sing N N 357 THR C O doub N N 358 THR C OXT sing N N 359 THR CB OG1 sing N N 360 THR CB CG2 sing N N 361 THR CB HB sing N N 362 THR OG1 HG1 sing N N 363 THR CG2 HG21 sing N N 364 THR CG2 HG22 sing N N 365 THR CG2 HG23 sing N N 366 THR OXT HXT sing N N 367 TRP N CA sing N N 368 TRP N H sing N N 369 TRP N H2 sing N N 370 TRP CA C sing N N 371 TRP CA CB sing N N 372 TRP CA HA sing N N 373 TRP C O doub N N 374 TRP C OXT sing N N 375 TRP CB CG sing N N 376 TRP CB HB2 sing N N 377 TRP CB HB3 sing N N 378 TRP CG CD1 doub Y N 379 TRP CG CD2 sing Y N 380 TRP CD1 NE1 sing Y N 381 TRP CD1 HD1 sing N N 382 TRP CD2 CE2 doub Y N 383 TRP CD2 CE3 sing Y N 384 TRP NE1 CE2 sing Y N 385 TRP NE1 HE1 sing N N 386 TRP CE2 CZ2 sing Y N 387 TRP CE3 CZ3 doub Y N 388 TRP CE3 HE3 sing N N 389 TRP CZ2 CH2 doub Y N 390 TRP CZ2 HZ2 sing N N 391 TRP CZ3 CH2 sing Y N 392 TRP CZ3 HZ3 sing N N 393 TRP CH2 HH2 sing N N 394 TRP OXT HXT sing N N 395 TYR N CA sing N N 396 TYR N H sing N N 397 TYR N H2 sing N N 398 TYR CA C sing N N 399 TYR CA CB sing N N 400 TYR CA HA sing N N 401 TYR C O doub N N 402 TYR C OXT sing N N 403 TYR CB CG sing N N 404 TYR CB HB2 sing N N 405 TYR CB HB3 sing N N 406 TYR CG CD1 doub Y N 407 TYR CG CD2 sing Y N 408 TYR CD1 CE1 sing Y N 409 TYR CD1 HD1 sing N N 410 TYR CD2 CE2 doub Y N 411 TYR CD2 HD2 sing N N 412 TYR CE1 CZ doub Y N 413 TYR CE1 HE1 sing N N 414 TYR CE2 CZ sing Y N 415 TYR CE2 HE2 sing N N 416 TYR CZ OH sing N N 417 TYR OH HH sing N N 418 TYR OXT HXT sing N N 419 VAL N CA sing N N 420 VAL N H sing N N 421 VAL N H2 sing N N 422 VAL CA C sing N N 423 VAL CA CB sing N N 424 VAL CA HA sing N N 425 VAL C O doub N N 426 VAL C OXT sing N N 427 VAL CB CG1 sing N N 428 VAL CB CG2 sing N N 429 VAL CB HB sing N N 430 VAL CG1 HG11 sing N N 431 VAL CG1 HG12 sing N N 432 VAL CG1 HG13 sing N N 433 VAL CG2 HG21 sing N N 434 VAL CG2 HG22 sing N N 435 VAL CG2 HG23 sing N N 436 VAL OXT HXT sing N N 437 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "CYTIDINE-5'-DIPHOSPHATE" CDP 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2PNZ _pdbx_initial_refinement_model.details 'PDB ENTRY 2PNZ' #