HEADER TRANSFERASE 25-APR-07 2PO3 TITLE CRYSTAL STRUCTURE ANALYSIS OF DESI IN THE PRESENCE OF ITS TDP-SUGAR TITLE 2 PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-DEHYDRASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE; SOURCE 3 ORGANISM_TAXID: 54571; SOURCE 4 GENE: DESI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HMS 174 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET31B(+) KEYWDS EXTERNAL ALDIMINE, PLP, AMINOTRANSFERASE, TDP-SUGAR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.BURGIE,H.M.HOLDEN REVDAT 3 30-AUG-23 2PO3 1 SEQADV REVDAT 2 24-FEB-09 2PO3 1 VERSN REVDAT 1 14-AUG-07 2PO3 0 JRNL AUTH E.S.BURGIE,H.M.HOLDEN JRNL TITL MOLECULAR ARCHITECTURE OF DESI: A KEY ENZYME IN THE JRNL TITL 2 BIOSYNTHESIS OF DESOSAMINE JRNL REF BIOCHEMISTRY V. 46 8999 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17630700 JRNL DOI 10.1021/BI700751D REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 55830 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5599 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1840 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 57438 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.270 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.008 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NICKEL FILTER REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OGA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML DESI, 75 MM NACL, 150 MM LICL, REMARK 280 14%PEG 8000, 10 MM DTDP-4-AMINO-4,6-DIDEOXY-ALPHA,D-GLUCOSE, 5 REMARK 280 MM HEPES, 50 MM HEPPS, PH 8.0, SITTING DROP (BATCH), TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 121.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE HOMODIMER COMPRISING REMARK 300 SUBUNITS A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1001 REMARK 465 LYS A 1002 REMARK 465 THR A 1396 REMARK 465 ALA A 1397 REMARK 465 PRO A 1398 REMARK 465 ALA A 1399 REMARK 465 PRO A 1400 REMARK 465 LEU A 1401 REMARK 465 ALA A 1402 REMARK 465 ALA A 1403 REMARK 465 PRO A 1404 REMARK 465 GLN A 1405 REMARK 465 THR A 1406 REMARK 465 SER A 1407 REMARK 465 THR A 1408 REMARK 465 PRO A 1409 REMARK 465 THR A 1410 REMARK 465 ILE A 1411 REMARK 465 GLY A 1412 REMARK 465 ARG A 1413 REMARK 465 SER A 1414 REMARK 465 ARG A 1415 REMARK 465 GLY A 1416 REMARK 465 LEU A 1417 REMARK 465 GLU A 1418 REMARK 465 HIS A 1419 REMARK 465 HIS A 1420 REMARK 465 HIS A 1421 REMARK 465 HIS A 1422 REMARK 465 HIS A 1423 REMARK 465 HIS A 1424 REMARK 465 MET B 2001 REMARK 465 LYS B 2002 REMARK 465 SER B 2003 REMARK 465 THR B 2396 REMARK 465 ALA B 2397 REMARK 465 PRO B 2398 REMARK 465 ALA B 2399 REMARK 465 PRO B 2400 REMARK 465 LEU B 2401 REMARK 465 ALA B 2402 REMARK 465 ALA B 2403 REMARK 465 PRO B 2404 REMARK 465 GLN B 2405 REMARK 465 THR B 2406 REMARK 465 SER B 2407 REMARK 465 THR B 2408 REMARK 465 PRO B 2409 REMARK 465 THR B 2410 REMARK 465 ILE B 2411 REMARK 465 GLY B 2412 REMARK 465 ARG B 2413 REMARK 465 SER B 2414 REMARK 465 ARG B 2415 REMARK 465 GLY B 2416 REMARK 465 LEU B 2417 REMARK 465 GLU B 2418 REMARK 465 HIS B 2419 REMARK 465 HIS B 2420 REMARK 465 HIS B 2421 REMARK 465 HIS B 2422 REMARK 465 HIS B 2423 REMARK 465 HIS B 2424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1056 CD GLU A1056 OE2 0.068 REMARK 500 GLU A1059 CD GLU A1059 OE2 0.069 REMARK 500 GLU A1163 CD GLU A1163 OE2 0.069 REMARK 500 GLU A1261 CD GLU A1261 OE2 0.070 REMARK 500 GLU A1275 CD GLU A1275 OE2 0.069 REMARK 500 GLU B2036 CD GLU B2036 OE2 0.067 REMARK 500 GLU B2056 CD GLU B2056 OE2 0.078 REMARK 500 GLU B2163 CD GLU B2163 OE2 0.073 REMARK 500 GLU B2275 CD GLU B2275 OE2 0.069 REMARK 500 GLU B2322 CD GLU B2322 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1007 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A1018 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A1043 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A1043 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A1118 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A1120 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A1181 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A1213 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A1213 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A1214 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A1222 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A1264 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A1287 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A1287 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A1289 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A1290 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A1313 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A1341 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A1370 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A1371 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A1377 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A1394 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A1395 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B2007 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B2007 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ALA B2015 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG B2028 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B2033 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B2039 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B2043 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B2068 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B2118 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B2120 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B2120 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B2122 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B2122 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B2127 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B2127 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP B2162 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B2171 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B2171 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B2181 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B2214 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP B2214 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B2216 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B2264 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B2267 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B2287 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B2289 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B2290 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 64 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1049 77.60 50.88 REMARK 500 ALA A1191 148.84 -171.20 REMARK 500 PHE A1205 -68.90 81.36 REMARK 500 ASP A1230 36.03 70.70 REMARK 500 SER B2048 -165.38 -163.22 REMARK 500 THR B2123 -46.16 -134.40 REMARK 500 LEU B2126 118.80 -37.33 REMARK 500 GLN B2130 -6.33 -58.20 REMARK 500 ALA B2172 30.75 -92.53 REMARK 500 ALA B2198 -29.74 -37.88 REMARK 500 PHE B2205 -63.80 73.31 REMARK 500 ARG B2394 24.99 -49.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 2PO3 A 1001 1415 UNP Q9ZGH0 Q9ZGH0_9ACTO 1 415 DBREF 2PO3 B 2001 2415 UNP Q9ZGH0 Q9ZGH0_9ACTO 1 415 SEQADV 2PO3 GLY A 1416 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 LEU A 1417 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 GLU A 1418 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS A 1419 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS A 1420 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS A 1421 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS A 1422 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS A 1423 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS A 1424 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 GLY B 2416 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 LEU B 2417 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 GLU B 2418 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS B 2419 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS B 2420 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS B 2421 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS B 2422 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS B 2423 UNP Q9ZGH0 EXPRESSION TAG SEQADV 2PO3 HIS B 2424 UNP Q9ZGH0 EXPRESSION TAG SEQRES 1 A 424 MET LYS SER ALA LEU SER ASP LEU ALA PHE PHE GLY GLY SEQRES 2 A 424 PRO ALA ALA PHE ASP GLN PRO LEU LEU VAL GLY ARG PRO SEQRES 3 A 424 ASN ARG ILE ASP ARG ALA ARG LEU TYR GLU ARG LEU ASP SEQRES 4 A 424 ARG ALA LEU ASP SER GLN TRP LEU SER ASN GLY GLY PRO SEQRES 5 A 424 LEU VAL ARG GLU PHE GLU GLU ARG VAL ALA GLY LEU ALA SEQRES 6 A 424 GLY VAL ARG HIS ALA VAL ALA THR CYS ASN ALA THR ALA SEQRES 7 A 424 GLY LEU GLN LEU LEU ALA HIS ALA ALA GLY LEU THR GLY SEQRES 8 A 424 GLU VAL ILE MET PRO SER MET THR PHE ALA ALA THR PRO SEQRES 9 A 424 HIS ALA LEU ARG TRP ILE GLY LEU THR PRO VAL PHE ALA SEQRES 10 A 424 ASP ILE ASP PRO ASP THR GLY ASN LEU ASP PRO ASP GLN SEQRES 11 A 424 VAL ALA ALA ALA VAL THR PRO ARG THR SER ALA VAL VAL SEQRES 12 A 424 GLY VAL HIS LEU TRP GLY ARG PRO CYS ALA ALA ASP GLN SEQRES 13 A 424 LEU ARG LYS VAL ALA ASP GLU HIS GLY LEU ARG LEU TYR SEQRES 14 A 424 PHE ASP ALA ALA HIS ALA LEU GLY CYS ALA VAL ASP GLY SEQRES 15 A 424 ARG PRO ALA GLY SER LEU GLY ASP ALA GLU VAL PHE SER SEQRES 16 A 424 PHE HIS ALA THR LYS ALA VAL ASN ALA PHE GLU GLY GLY SEQRES 17 A 424 ALA VAL VAL THR ASP ASP ALA ASP LEU ALA ALA ARG ILE SEQRES 18 A 424 ARG ALA LEU HIS ASN PHE GLY PHE ASP LEU PRO GLY GLY SEQRES 19 A 424 SER PRO ALA GLY GLY THR ASN ALA LYS MET SER GLU ALA SEQRES 20 A 424 ALA ALA ALA MET GLY LEU THR SER LEU ASP ALA PHE PRO SEQRES 21 A 424 GLU VAL ILE ASP ARG ASN ARG ARG ASN HIS ALA ALA TYR SEQRES 22 A 424 ARG GLU HIS LEU ALA ASP LEU PRO GLY VAL LEU VAL ALA SEQRES 23 A 424 ASP HIS ASP ARG HIS GLY LEU ASN ASN HIS GLN TYR VAL SEQRES 24 A 424 ILE VAL GLU ILE ASP GLU ALA THR THR GLY ILE HIS ARG SEQRES 25 A 424 ASP LEU VAL MET GLU VAL LEU LYS ALA GLU GLY VAL HIS SEQRES 26 A 424 THR ARG ALA TYR PHE SER PRO GLY CYS HIS GLU LEU GLU SEQRES 27 A 424 PRO TYR ARG GLY GLN PRO HIS ALA PRO LEU PRO HIS THR SEQRES 28 A 424 GLU ARG LEU ALA ALA ARG VAL LEU SER LEU PRO THR GLY SEQRES 29 A 424 THR ALA ILE GLY ASP ASP ASP ILE ARG ARG VAL ALA ASP SEQRES 30 A 424 LEU LEU ARG LEU CYS ALA THR ARG GLY ARG GLU LEU THR SEQRES 31 A 424 ALA ARG HIS ARG ASP THR ALA PRO ALA PRO LEU ALA ALA SEQRES 32 A 424 PRO GLN THR SER THR PRO THR ILE GLY ARG SER ARG GLY SEQRES 33 A 424 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 424 MET LYS SER ALA LEU SER ASP LEU ALA PHE PHE GLY GLY SEQRES 2 B 424 PRO ALA ALA PHE ASP GLN PRO LEU LEU VAL GLY ARG PRO SEQRES 3 B 424 ASN ARG ILE ASP ARG ALA ARG LEU TYR GLU ARG LEU ASP SEQRES 4 B 424 ARG ALA LEU ASP SER GLN TRP LEU SER ASN GLY GLY PRO SEQRES 5 B 424 LEU VAL ARG GLU PHE GLU GLU ARG VAL ALA GLY LEU ALA SEQRES 6 B 424 GLY VAL ARG HIS ALA VAL ALA THR CYS ASN ALA THR ALA SEQRES 7 B 424 GLY LEU GLN LEU LEU ALA HIS ALA ALA GLY LEU THR GLY SEQRES 8 B 424 GLU VAL ILE MET PRO SER MET THR PHE ALA ALA THR PRO SEQRES 9 B 424 HIS ALA LEU ARG TRP ILE GLY LEU THR PRO VAL PHE ALA SEQRES 10 B 424 ASP ILE ASP PRO ASP THR GLY ASN LEU ASP PRO ASP GLN SEQRES 11 B 424 VAL ALA ALA ALA VAL THR PRO ARG THR SER ALA VAL VAL SEQRES 12 B 424 GLY VAL HIS LEU TRP GLY ARG PRO CYS ALA ALA ASP GLN SEQRES 13 B 424 LEU ARG LYS VAL ALA ASP GLU HIS GLY LEU ARG LEU TYR SEQRES 14 B 424 PHE ASP ALA ALA HIS ALA LEU GLY CYS ALA VAL ASP GLY SEQRES 15 B 424 ARG PRO ALA GLY SER LEU GLY ASP ALA GLU VAL PHE SER SEQRES 16 B 424 PHE HIS ALA THR LYS ALA VAL ASN ALA PHE GLU GLY GLY SEQRES 17 B 424 ALA VAL VAL THR ASP ASP ALA ASP LEU ALA ALA ARG ILE SEQRES 18 B 424 ARG ALA LEU HIS ASN PHE GLY PHE ASP LEU PRO GLY GLY SEQRES 19 B 424 SER PRO ALA GLY GLY THR ASN ALA LYS MET SER GLU ALA SEQRES 20 B 424 ALA ALA ALA MET GLY LEU THR SER LEU ASP ALA PHE PRO SEQRES 21 B 424 GLU VAL ILE ASP ARG ASN ARG ARG ASN HIS ALA ALA TYR SEQRES 22 B 424 ARG GLU HIS LEU ALA ASP LEU PRO GLY VAL LEU VAL ALA SEQRES 23 B 424 ASP HIS ASP ARG HIS GLY LEU ASN ASN HIS GLN TYR VAL SEQRES 24 B 424 ILE VAL GLU ILE ASP GLU ALA THR THR GLY ILE HIS ARG SEQRES 25 B 424 ASP LEU VAL MET GLU VAL LEU LYS ALA GLU GLY VAL HIS SEQRES 26 B 424 THR ARG ALA TYR PHE SER PRO GLY CYS HIS GLU LEU GLU SEQRES 27 B 424 PRO TYR ARG GLY GLN PRO HIS ALA PRO LEU PRO HIS THR SEQRES 28 B 424 GLU ARG LEU ALA ALA ARG VAL LEU SER LEU PRO THR GLY SEQRES 29 B 424 THR ALA ILE GLY ASP ASP ASP ILE ARG ARG VAL ALA ASP SEQRES 30 B 424 LEU LEU ARG LEU CYS ALA THR ARG GLY ARG GLU LEU THR SEQRES 31 B 424 ALA ARG HIS ARG ASP THR ALA PRO ALA PRO LEU ALA ALA SEQRES 32 B 424 PRO GLN THR SER THR PRO THR ILE GLY ARG SER ARG GLY SEQRES 33 B 424 LEU GLU HIS HIS HIS HIS HIS HIS HET T4K A1500 50 HET T4K B2500 50 HETNAM T4K (2R,3R,4S,5S,6R)-3,4-DIHYDROXY-5-[({3-HYDROXY-2-METHYL- HETNAM 2 T4K 5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]-6- HETNAM 3 T4K METHYLTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY- HETNAM 4 T4K 5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) HETNAM 5 T4K TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE FORMUL 3 T4K 2(C24 H35 N4 O19 P3) FORMUL 5 HOH *593(H2 O) HELIX 1 1 LEU A 1008 GLY A 1012 5 5 HELIX 2 2 ASP A 1030 GLN A 1045 1 16 HELIX 3 3 GLY A 1051 GLY A 1066 1 16 HELIX 4 4 ASN A 1075 GLY A 1088 1 14 HELIX 5 5 ALA A 1101 ILE A 1110 1 10 HELIX 6 6 ASP A 1127 ALA A 1132 1 6 HELIX 7 7 ALA A 1133 VAL A 1135 5 3 HELIX 8 8 LEU A 1147 ARG A 1150 5 4 HELIX 9 9 ALA A 1153 HIS A 1164 1 12 HELIX 10 10 ASP A 1214 ASN A 1226 1 13 HELIX 11 11 SER A 1245 LEU A 1277 1 33 HELIX 12 12 ASP A 1287 GLY A 1292 5 6 HELIX 13 13 ASP A 1304 GLY A 1309 1 6 HELIX 14 14 HIS A 1311 GLU A 1322 1 12 HELIX 15 15 GLY A 1333 LEU A 1337 5 5 HELIX 16 16 LEU A 1348 ALA A 1356 1 9 HELIX 17 17 GLY A 1368 ASP A 1395 1 28 HELIX 18 18 ALA B 2004 GLY B 2012 5 9 HELIX 19 19 ASP B 2030 GLN B 2045 1 16 HELIX 20 20 GLY B 2051 GLY B 2066 1 16 HELIX 21 21 ASN B 2075 GLY B 2088 1 14 HELIX 22 22 ALA B 2101 ILE B 2110 1 10 HELIX 23 23 GLN B 2130 VAL B 2135 1 6 HELIX 24 24 LEU B 2147 ARG B 2150 5 4 HELIX 25 25 ALA B 2153 HIS B 2164 1 12 HELIX 26 26 ASP B 2214 HIS B 2225 1 12 HELIX 27 27 SER B 2245 LEU B 2277 1 33 HELIX 28 28 ASP B 2287 GLY B 2292 5 6 HELIX 29 29 ASP B 2304 GLY B 2309 1 6 HELIX 30 30 HIS B 2311 GLU B 2322 1 12 HELIX 31 31 GLY B 2333 LEU B 2337 5 5 HELIX 32 32 LEU B 2348 ALA B 2356 1 9 HELIX 33 33 GLY B 2368 ARG B 2385 1 18 HELIX 34 34 ARG B 2385 ARG B 2394 1 10 SHEET 1 A 2 LEU A1021 LEU A1022 0 SHEET 2 A 2 VAL A1324 HIS A1325 1 O HIS A1325 N LEU A1021 SHEET 1 B 7 HIS A1069 THR A1073 0 SHEET 2 B 7 GLY A1208 THR A1212 -1 O GLY A1208 N THR A1073 SHEET 3 B 7 ALA A1191 SER A1195 -1 N PHE A1194 O ALA A1209 SHEET 4 B 7 ARG A1167 ASP A1171 1 N PHE A1170 O VAL A1193 SHEET 5 B 7 THR A1139 VAL A1145 1 N GLY A1144 O ASP A1171 SHEET 6 B 7 GLU A1092 PRO A1096 1 N ILE A1094 O VAL A1143 SHEET 7 B 7 THR A1113 ALA A1117 1 O VAL A1115 N VAL A1093 SHEET 1 C 2 ALA A1179 VAL A1180 0 SHEET 2 C 2 ARG A1183 PRO A1184 -1 O ARG A1183 N VAL A1180 SHEET 1 D 3 VAL A1283 VAL A1285 0 SHEET 2 D 3 VAL A1299 ILE A1303 -1 O GLU A1302 N LEU A1284 SHEET 3 D 3 VAL A1358 LEU A1361 -1 O LEU A1361 N VAL A1299 SHEET 1 E 2 LEU B2021 LEU B2022 0 SHEET 2 E 2 VAL B2324 HIS B2325 1 O HIS B2325 N LEU B2021 SHEET 1 F 7 HIS B2069 THR B2073 0 SHEET 2 F 7 GLY B2208 THR B2212 -1 O VAL B2210 N VAL B2071 SHEET 3 F 7 GLU B2192 SER B2195 -1 N GLU B2192 O VAL B2211 SHEET 4 F 7 ARG B2167 ASP B2171 1 N PHE B2170 O VAL B2193 SHEET 5 F 7 THR B2139 VAL B2145 1 N VAL B2142 O ARG B2167 SHEET 6 F 7 GLU B2092 PRO B2096 1 N ILE B2094 O VAL B2143 SHEET 7 F 7 THR B2113 ALA B2117 1 O VAL B2115 N MET B2095 SHEET 1 G 2 ALA B2179 VAL B2180 0 SHEET 2 G 2 ARG B2183 PRO B2184 -1 O ARG B2183 N VAL B2180 SHEET 1 H 3 VAL B2283 VAL B2285 0 SHEET 2 H 3 VAL B2299 ILE B2303 -1 O GLU B2302 N LEU B2284 SHEET 3 H 3 VAL B2358 LEU B2361 -1 O LEU B2361 N VAL B2299 CISPEP 1 TYR A 1329 PHE A 1330 0 1.60 CISPEP 2 SER A 1331 PRO A 1332 0 -0.78 CISPEP 3 GLU A 1338 PRO A 1339 0 1.55 CISPEP 4 TYR B 2329 PHE B 2330 0 0.65 CISPEP 5 SER B 2331 PRO B 2332 0 0.91 CISPEP 6 GLU B 2338 PRO B 2339 0 1.80 CRYST1 59.500 66.800 242.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004132 0.00000