data_2PPX # _entry.id 2PPX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PPX RCSB RCSB042654 WWPDB D_1000042654 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC6027 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PPX _pdbx_database_status.recvd_initial_deposition_date 2007-04-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Skarina, T.' 2 'Onopriyenko, O.' 3 'Edwards, A.' 4 'Savchenko, A.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'Structure of a HTH XRE-family like protein from Agrobacterium tumefaciens.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Skarina, T.' 2 primary 'Onopriyenko, O.' 3 primary 'Edwards, A.' 4 primary 'Savchenko, A.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 2PPX _cell.length_a 70.696 _cell.length_b 70.696 _cell.length_c 103.736 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PPX _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein Atu1735' 10927.922 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name AGR_C_3184p # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)TDEDSEANALADPDNPPLSAEQLASAPR(MSE)PRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQ PARAYLKIIAVDPEGTAAALRKGATGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMTDEDSEANALADPDNPPLSAEQLASAPRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKI IAVDPEGTAAALRKGATGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC6027 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 THR n 1 5 ASP n 1 6 GLU n 1 7 ASP n 1 8 SER n 1 9 GLU n 1 10 ALA n 1 11 ASN n 1 12 ALA n 1 13 LEU n 1 14 ALA n 1 15 ASP n 1 16 PRO n 1 17 ASP n 1 18 ASN n 1 19 PRO n 1 20 PRO n 1 21 LEU n 1 22 SER n 1 23 ALA n 1 24 GLU n 1 25 GLN n 1 26 LEU n 1 27 ALA n 1 28 SER n 1 29 ALA n 1 30 PRO n 1 31 ARG n 1 32 MSE n 1 33 PRO n 1 34 ARG n 1 35 ILE n 1 36 LYS n 1 37 ILE n 1 38 ILE n 1 39 ARG n 1 40 ARG n 1 41 ALA n 1 42 LEU n 1 43 LYS n 1 44 LEU n 1 45 THR n 1 46 GLN n 1 47 GLU n 1 48 GLU n 1 49 PHE n 1 50 SER n 1 51 ALA n 1 52 ARG n 1 53 TYR n 1 54 HIS n 1 55 ILE n 1 56 PRO n 1 57 LEU n 1 58 GLY n 1 59 THR n 1 60 LEU n 1 61 ARG n 1 62 ASP n 1 63 TRP n 1 64 GLU n 1 65 GLN n 1 66 GLY n 1 67 ARG n 1 68 SER n 1 69 GLU n 1 70 PRO n 1 71 ASP n 1 72 GLN n 1 73 PRO n 1 74 ALA n 1 75 ARG n 1 76 ALA n 1 77 TYR n 1 78 LEU n 1 79 LYS n 1 80 ILE n 1 81 ILE n 1 82 ALA n 1 83 VAL n 1 84 ASP n 1 85 PRO n 1 86 GLU n 1 87 GLY n 1 88 THR n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 LEU n 1 93 ARG n 1 94 LYS n 1 95 GLY n 1 96 ALA n 1 97 THR n 1 98 GLY n 1 99 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Agrobacterium _entity_src_gen.pdbx_gene_src_gene 'Atu1735, AGR_C_3184' _entity_src_gen.gene_src_species 'Agrobacterium tumefaciens' _entity_src_gen.gene_src_strain C58 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Agrobacterium tumefaciens str.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 176299 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33970 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'modified BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified p11' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8UEM2_AGRT5 _struct_ref.pdbx_db_accession Q8UEM2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTDEDSEANALADPDNPPLSAEQLASAPRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIA VDPEGTAAALRKGAT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PPX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8UEM2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 95 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 95 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PPX GLY A 1 ? UNP Q8UEM2 ? ? 'CLONING ARTIFACT' -1 1 1 2PPX HIS A 2 ? UNP Q8UEM2 ? ? 'CLONING ARTIFACT' 0 2 1 2PPX MSE A 3 ? UNP Q8UEM2 MET 1 'MODIFIED RESIDUE' 1 3 1 2PPX MSE A 32 ? UNP Q8UEM2 MET 30 'MODIFIED RESIDUE' 30 4 1 2PPX GLY A 98 ? UNP Q8UEM2 ? ? 'CLONING ARTIFACT' 96 5 1 2PPX SER A 99 ? UNP Q8UEM2 ? ? 'CLONING ARTIFACT' 97 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PPX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_percent_sol 64.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '2M Ammonium sulfate, 0.2M K/Na tartrate, 0.1M Na citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-02-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97948 1.0 2 0.97935 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97948, 0.97935' # _reflns.entry_id 2PPX _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 35.35 _reflns.number_all 10649 _reflns.number_obs 10649 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.B_iso_Wilson_estimate 38.6 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 81.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.347 _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PPX _refine.ls_number_reflns_obs 10139 _refine.ls_number_reflns_all 10139 _refine.pdbx_ls_sigma_I -3 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.35 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.53 _refine.ls_R_factor_obs 0.19831 _refine.ls_R_factor_all 0.19831 _refine.ls_R_factor_R_work 0.19607 _refine.ls_R_factor_R_free 0.24382 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 509 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.B_iso_mean 65.677 _refine.aniso_B[1][1] 0.90 _refine.aniso_B[2][2] 0.90 _refine.aniso_B[3][3] -1.35 _refine.aniso_B[1][2] 0.45 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.118 _refine.pdbx_overall_ESU_R_Free 0.126 _refine.overall_SU_ML 0.075 _refine.overall_SU_B 5.095 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 501 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 611 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 35.35 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 586 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.450 2.045 ? 798 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.268 5.000 ? 71 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.974 21.481 ? 27 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.769 15.000 ? 105 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.649 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.112 0.200 ? 81 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 428 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 271 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 382 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.123 0.200 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.184 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.124 0.200 ? 9 'X-RAY DIFFRACTION' ? r_mcbond_it 0.834 1.500 ? 347 'X-RAY DIFFRACTION' ? r_mcangle_it 1.312 2.000 ? 542 'X-RAY DIFFRACTION' ? r_scbond_it 2.356 3.000 ? 268 'X-RAY DIFFRACTION' ? r_scangle_it 3.856 4.500 ? 253 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 616 _refine_ls_shell.R_factor_R_work 0.31 _refine_ls_shell.percent_reflns_obs 83.12 _refine_ls_shell.R_factor_R_free 0.396 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PPX _struct.title 'Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens' _struct.pdbx_descriptor 'Uncharacterized protein Atu1735' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PPX _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Agrobacterium tumefaciens, HTH-motif, XRE-family, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details 'potential tetramer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 33 ? LEU A 42 ? PRO A 31 LEU A 40 1 ? 10 HELX_P HELX_P2 2 THR A 45 ? HIS A 54 ? THR A 43 HIS A 52 1 ? 10 HELX_P HELX_P3 3 PRO A 56 ? GLN A 65 ? PRO A 54 GLN A 63 1 ? 10 HELX_P HELX_P4 4 ASP A 71 ? ASP A 84 ? ASP A 69 ASP A 82 1 ? 14 HELX_P HELX_P5 5 ASP A 84 ? ARG A 93 ? ASP A 82 ARG A 91 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id MSE _struct_conn.ptnr1_label_seq_id 32 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id PRO _struct_conn.ptnr2_label_seq_id 33 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MSE _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PRO _struct_conn.ptnr2_auth_seq_id 31 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.340 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 102' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 103' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 104' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 106' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 107' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 201' AC8 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 39 ? ARG A 37 . ? 1_555 ? 2 AC1 5 ARG A 40 ? ARG A 38 . ? 1_555 ? 3 AC1 5 LYS A 43 ? LYS A 41 . ? 10_665 ? 4 AC1 5 HOH J . ? HOH A 228 . ? 1_555 ? 5 AC1 5 HOH J . ? HOH A 247 . ? 1_555 ? 6 AC2 4 GLU A 47 ? GLU A 45 . ? 8_555 ? 7 AC2 4 ARG A 61 ? ARG A 59 . ? 8_555 ? 8 AC2 4 ARG A 67 ? ARG A 65 . ? 1_555 ? 9 AC2 4 HOH J . ? HOH A 205 . ? 1_555 ? 10 AC3 7 SER A 68 ? SER A 66 . ? 1_555 ? 11 AC3 7 GLU A 69 ? GLU A 67 . ? 1_555 ? 12 AC3 7 ASP A 71 ? ASP A 69 . ? 11_655 ? 13 AC3 7 ARG A 75 ? ARG A 73 . ? 11_655 ? 14 AC3 7 HOH J . ? HOH A 211 . ? 11_655 ? 15 AC3 7 HOH J . ? HOH A 217 . ? 1_555 ? 16 AC3 7 HOH J . ? HOH A 242 . ? 11_655 ? 17 AC4 6 HIS A 54 ? HIS A 52 . ? 4_655 ? 18 AC4 6 GLN A 72 ? GLN A 70 . ? 1_555 ? 19 AC4 6 ARG A 75 ? ARG A 73 . ? 1_555 ? 20 AC4 6 HOH J . ? HOH A 215 . ? 1_555 ? 21 AC4 6 HOH J . ? HOH A 257 . ? 1_555 ? 22 AC4 6 HOH J . ? HOH A 260 . ? 1_555 ? 23 AC5 4 LYS A 36 ? LYS A 34 . ? 1_555 ? 24 AC5 4 ARG A 40 ? ARG A 38 . ? 1_555 ? 25 AC5 4 HOH J . ? HOH A 252 . ? 1_555 ? 26 AC5 4 HOH J . ? HOH A 261 . ? 1_555 ? 27 AC6 1 ARG A 52 ? ARG A 50 . ? 1_555 ? 28 AC7 2 ARG A 52 ? ARG A 50 . ? 1_555 ? 29 AC7 2 ARG A 93 ? ARG A 91 . ? 1_555 ? 30 AC8 6 ARG A 34 ? ARG A 32 . ? 1_555 ? 31 AC8 6 HOH J . ? HOH A 212 . ? 1_555 ? 32 AC8 6 HOH J . ? HOH A 256 . ? 1_555 ? 33 AC8 6 HOH J . ? HOH A 257 . ? 1_555 ? 34 AC8 6 HOH J . ? HOH A 265 . ? 1_555 ? 35 AC8 6 HOH J . ? HOH A 266 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PPX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PPX _atom_sites.fract_transf_matrix[1][1] 0.014145 _atom_sites.fract_transf_matrix[1][2] 0.008167 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009640 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 HIS 2 0 ? ? ? A . n A 1 3 MSE 3 1 ? ? ? A . n A 1 4 THR 4 2 ? ? ? A . n A 1 5 ASP 5 3 ? ? ? A . n A 1 6 GLU 6 4 ? ? ? A . n A 1 7 ASP 7 5 ? ? ? A . n A 1 8 SER 8 6 ? ? ? A . n A 1 9 GLU 9 7 ? ? ? A . n A 1 10 ALA 10 8 ? ? ? A . n A 1 11 ASN 11 9 ? ? ? A . n A 1 12 ALA 12 10 ? ? ? A . n A 1 13 LEU 13 11 ? ? ? A . n A 1 14 ALA 14 12 ? ? ? A . n A 1 15 ASP 15 13 ? ? ? A . n A 1 16 PRO 16 14 ? ? ? A . n A 1 17 ASP 17 15 ? ? ? A . n A 1 18 ASN 18 16 ? ? ? A . n A 1 19 PRO 19 17 ? ? ? A . n A 1 20 PRO 20 18 ? ? ? A . n A 1 21 LEU 21 19 ? ? ? A . n A 1 22 SER 22 20 ? ? ? A . n A 1 23 ALA 23 21 ? ? ? A . n A 1 24 GLU 24 22 ? ? ? A . n A 1 25 GLN 25 23 ? ? ? A . n A 1 26 LEU 26 24 ? ? ? A . n A 1 27 ALA 27 25 ? ? ? A . n A 1 28 SER 28 26 ? ? ? A . n A 1 29 ALA 29 27 ? ? ? A . n A 1 30 PRO 30 28 ? ? ? A . n A 1 31 ARG 31 29 ? ? ? A . n A 1 32 MSE 32 30 30 MSE MSE A . n A 1 33 PRO 33 31 31 PRO PRO A . n A 1 34 ARG 34 32 32 ARG ARG A . n A 1 35 ILE 35 33 33 ILE ILE A . n A 1 36 LYS 36 34 34 LYS LYS A . n A 1 37 ILE 37 35 35 ILE ILE A . n A 1 38 ILE 38 36 36 ILE ILE A . n A 1 39 ARG 39 37 37 ARG ARG A . n A 1 40 ARG 40 38 38 ARG ARG A . n A 1 41 ALA 41 39 39 ALA ALA A . n A 1 42 LEU 42 40 40 LEU LEU A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 LEU 44 42 42 LEU LEU A . n A 1 45 THR 45 43 43 THR THR A . n A 1 46 GLN 46 44 44 GLN GLN A . n A 1 47 GLU 47 45 45 GLU GLU A . n A 1 48 GLU 48 46 46 GLU GLU A . n A 1 49 PHE 49 47 47 PHE PHE A . n A 1 50 SER 50 48 48 SER SER A . n A 1 51 ALA 51 49 49 ALA ALA A . n A 1 52 ARG 52 50 50 ARG ARG A . n A 1 53 TYR 53 51 51 TYR TYR A . n A 1 54 HIS 54 52 52 HIS HIS A . n A 1 55 ILE 55 53 53 ILE ILE A . n A 1 56 PRO 56 54 54 PRO PRO A . n A 1 57 LEU 57 55 55 LEU LEU A . n A 1 58 GLY 58 56 56 GLY GLY A . n A 1 59 THR 59 57 57 THR THR A . n A 1 60 LEU 60 58 58 LEU LEU A . n A 1 61 ARG 61 59 59 ARG ARG A . n A 1 62 ASP 62 60 60 ASP ASP A . n A 1 63 TRP 63 61 61 TRP TRP A . n A 1 64 GLU 64 62 62 GLU GLU A . n A 1 65 GLN 65 63 63 GLN GLN A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 ARG 67 65 65 ARG ARG A . n A 1 68 SER 68 66 66 SER SER A . n A 1 69 GLU 69 67 67 GLU GLU A . n A 1 70 PRO 70 68 68 PRO PRO A . n A 1 71 ASP 71 69 69 ASP ASP A . n A 1 72 GLN 72 70 70 GLN GLN A . n A 1 73 PRO 73 71 71 PRO PRO A . n A 1 74 ALA 74 72 72 ALA ALA A . n A 1 75 ARG 75 73 73 ARG ARG A . n A 1 76 ALA 76 74 74 ALA ALA A . n A 1 77 TYR 77 75 75 TYR TYR A . n A 1 78 LEU 78 76 76 LEU LEU A . n A 1 79 LYS 79 77 77 LYS LYS A . n A 1 80 ILE 80 78 78 ILE ILE A . n A 1 81 ILE 81 79 79 ILE ILE A . n A 1 82 ALA 82 80 80 ALA ALA A . n A 1 83 VAL 83 81 81 VAL VAL A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 PRO 85 83 83 PRO PRO A . n A 1 86 GLU 86 84 84 GLU GLU A . n A 1 87 GLY 87 85 85 GLY GLY A . n A 1 88 THR 88 86 86 THR THR A . n A 1 89 ALA 89 87 87 ALA ALA A . n A 1 90 ALA 90 88 88 ALA ALA A . n A 1 91 ALA 91 89 89 ALA ALA A . n A 1 92 LEU 92 90 90 LEU LEU A . n A 1 93 ARG 93 91 91 ARG ARG A . n A 1 94 LYS 94 92 ? ? ? A . n A 1 95 GLY 95 93 ? ? ? A . n A 1 96 ALA 96 94 ? ? ? A . n A 1 97 THR 97 95 ? ? ? A . n A 1 98 GLY 98 96 ? ? ? A . n A 1 99 SER 99 97 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 32 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 30 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10260 ? 1 MORE -285 ? 1 'SSA (A^2)' 12930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 70.6960000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1.0000000000 0.0000000000 0.0000000000 70.6960000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 223 ? J HOH . 2 1 A HOH 225 ? J HOH . 3 1 A HOH 269 ? J HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 44.6426 _pdbx_refine_tls.origin_y 3.0189 _pdbx_refine_tls.origin_z 11.9951 _pdbx_refine_tls.T[1][1] -0.2037 _pdbx_refine_tls.T[2][2] -0.4355 _pdbx_refine_tls.T[3][3] -0.4700 _pdbx_refine_tls.T[1][2] -0.0742 _pdbx_refine_tls.T[1][3] -0.0435 _pdbx_refine_tls.T[2][3] -0.0405 _pdbx_refine_tls.L[1][1] 4.0654 _pdbx_refine_tls.L[2][2] 4.0375 _pdbx_refine_tls.L[3][3] 5.0941 _pdbx_refine_tls.L[1][2] 1.6966 _pdbx_refine_tls.L[1][3] 0.7968 _pdbx_refine_tls.L[2][3] 0.2281 _pdbx_refine_tls.S[1][1] 0.3751 _pdbx_refine_tls.S[1][2] -0.3671 _pdbx_refine_tls.S[1][3] -0.1045 _pdbx_refine_tls.S[2][1] 0.3664 _pdbx_refine_tls.S[2][2] -0.0809 _pdbx_refine_tls.S[2][3] -0.2228 _pdbx_refine_tls.S[3][1] 0.1751 _pdbx_refine_tls.S[3][2] 0.1834 _pdbx_refine_tls.S[3][3] -0.2942 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 30 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 32 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 91 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 93 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 MLPHARE phasing . ? 8 DM phasing . ? 9 SOLVE phasing . ? 10 RESOLVE phasing . ? 11 ARP/wARP 'model building' . ? 12 CCP4 phasing . ? 13 O 'model building' . ? 14 Coot 'model building' . ? 15 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. THE POTENTIAL TETRAMERIC ASSEMBLY SHOWN IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED ON THIS CRYSTAL STRUCTURE. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A HIS 0 ? A HIS 2 3 1 Y 1 A MSE 1 ? A MSE 3 4 1 Y 1 A THR 2 ? A THR 4 5 1 Y 1 A ASP 3 ? A ASP 5 6 1 Y 1 A GLU 4 ? A GLU 6 7 1 Y 1 A ASP 5 ? A ASP 7 8 1 Y 1 A SER 6 ? A SER 8 9 1 Y 1 A GLU 7 ? A GLU 9 10 1 Y 1 A ALA 8 ? A ALA 10 11 1 Y 1 A ASN 9 ? A ASN 11 12 1 Y 1 A ALA 10 ? A ALA 12 13 1 Y 1 A LEU 11 ? A LEU 13 14 1 Y 1 A ALA 12 ? A ALA 14 15 1 Y 1 A ASP 13 ? A ASP 15 16 1 Y 1 A PRO 14 ? A PRO 16 17 1 Y 1 A ASP 15 ? A ASP 17 18 1 Y 1 A ASN 16 ? A ASN 18 19 1 Y 1 A PRO 17 ? A PRO 19 20 1 Y 1 A PRO 18 ? A PRO 20 21 1 Y 1 A LEU 19 ? A LEU 21 22 1 Y 1 A SER 20 ? A SER 22 23 1 Y 1 A ALA 21 ? A ALA 23 24 1 Y 1 A GLU 22 ? A GLU 24 25 1 Y 1 A GLN 23 ? A GLN 25 26 1 Y 1 A LEU 24 ? A LEU 26 27 1 Y 1 A ALA 25 ? A ALA 27 28 1 Y 1 A SER 26 ? A SER 28 29 1 Y 1 A ALA 27 ? A ALA 29 30 1 Y 1 A PRO 28 ? A PRO 30 31 1 Y 1 A ARG 29 ? A ARG 31 32 1 Y 1 A LYS 92 ? A LYS 94 33 1 Y 1 A GLY 93 ? A GLY 95 34 1 Y 1 A ALA 94 ? A ALA 96 35 1 Y 1 A THR 95 ? A THR 97 36 1 Y 1 A GLY 96 ? A GLY 98 37 1 Y 1 A SER 97 ? A SER 99 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 101 1 SO4 SO4 A . C 2 SO4 1 102 2 SO4 SO4 A . D 2 SO4 1 103 3 SO4 SO4 A . E 2 SO4 1 104 4 SO4 SO4 A . F 2 SO4 1 106 6 SO4 SO4 A . G 2 SO4 1 107 7 SO4 SO4 A . H 3 GOL 1 201 1 GOL GOL A . I 3 GOL 1 202 1 GOL GOL A . J 4 HOH 1 203 1 HOH HOH A . J 4 HOH 2 204 2 HOH HOH A . J 4 HOH 3 205 3 HOH HOH A . J 4 HOH 4 206 4 HOH HOH A . J 4 HOH 5 207 5 HOH HOH A . J 4 HOH 6 208 6 HOH HOH A . J 4 HOH 7 209 7 HOH HOH A . J 4 HOH 8 210 8 HOH HOH A . J 4 HOH 9 211 9 HOH HOH A . J 4 HOH 10 212 10 HOH HOH A . J 4 HOH 11 213 11 HOH HOH A . J 4 HOH 12 214 12 HOH HOH A . J 4 HOH 13 215 13 HOH HOH A . J 4 HOH 14 216 14 HOH HOH A . J 4 HOH 15 217 15 HOH HOH A . J 4 HOH 16 218 16 HOH HOH A . J 4 HOH 17 219 17 HOH HOH A . J 4 HOH 18 220 18 HOH HOH A . J 4 HOH 19 221 19 HOH HOH A . J 4 HOH 20 222 20 HOH HOH A . J 4 HOH 21 223 21 HOH HOH A . J 4 HOH 22 224 22 HOH HOH A . J 4 HOH 23 225 23 HOH HOH A . J 4 HOH 24 226 24 HOH HOH A . J 4 HOH 25 227 25 HOH HOH A . J 4 HOH 26 228 26 HOH HOH A . J 4 HOH 27 229 27 HOH HOH A . J 4 HOH 28 230 28 HOH HOH A . J 4 HOH 29 231 29 HOH HOH A . J 4 HOH 30 232 30 HOH HOH A . J 4 HOH 31 233 31 HOH HOH A . J 4 HOH 32 234 32 HOH HOH A . J 4 HOH 33 235 33 HOH HOH A . J 4 HOH 34 236 34 HOH HOH A . J 4 HOH 35 237 35 HOH HOH A . J 4 HOH 36 238 36 HOH HOH A . J 4 HOH 37 239 37 HOH HOH A . J 4 HOH 38 240 38 HOH HOH A . J 4 HOH 39 241 39 HOH HOH A . J 4 HOH 40 242 40 HOH HOH A . J 4 HOH 41 243 41 HOH HOH A . J 4 HOH 42 244 42 HOH HOH A . J 4 HOH 43 245 43 HOH HOH A . J 4 HOH 44 246 44 HOH HOH A . J 4 HOH 45 247 45 HOH HOH A . J 4 HOH 46 248 46 HOH HOH A . J 4 HOH 47 249 47 HOH HOH A . J 4 HOH 48 250 49 HOH HOH A . J 4 HOH 49 251 50 HOH HOH A . J 4 HOH 50 252 52 HOH HOH A . J 4 HOH 51 253 53 HOH HOH A . J 4 HOH 52 254 54 HOH HOH A . J 4 HOH 53 255 55 HOH HOH A . J 4 HOH 54 256 56 HOH HOH A . J 4 HOH 55 257 57 HOH HOH A . J 4 HOH 56 258 58 HOH HOH A . J 4 HOH 57 259 59 HOH HOH A . J 4 HOH 58 260 63 HOH HOH A . J 4 HOH 59 261 68 HOH HOH A . J 4 HOH 60 262 69 HOH HOH A . J 4 HOH 61 263 75 HOH HOH A . J 4 HOH 62 264 76 HOH HOH A . J 4 HOH 63 265 77 HOH HOH A . J 4 HOH 64 266 78 HOH HOH A . J 4 HOH 65 267 84 HOH HOH A . J 4 HOH 66 268 86 HOH HOH A . J 4 HOH 67 269 87 HOH HOH A . J 4 HOH 68 270 88 HOH HOH A . #