HEADER TRANSCRIPTION 02-MAY-07 2PQQ TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF TITLE 2 A TRANSCRIPTIONAL REGULATOR FROM STREPTOMYCES COELICOLOR A3(2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2), M145; SOURCE 5 ATCC: BAA-471; SOURCE 6 GENE: SCO3571, SCH17.05; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC7345, TRANSCRIPTIONAL REGULATOR, STREPTOMYCES COELICOLOR A3(2), KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 18-OCT-17 2PQQ 1 REMARK REVDAT 4 13-JUL-11 2PQQ 1 VERSN REVDAT 3 24-FEB-09 2PQQ 1 VERSN REVDAT 2 28-OCT-08 2PQQ 1 AUTHOR JRNL REVDAT 1 05-JUN-07 2PQQ 0 JRNL AUTH K.TAN,X.XU,H.ZHENG,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF A JRNL TITL 2 TRANSCRIPTIONAL REGULATOR FROM STREPTOMYCES COELICOLOR A3(2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.918 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4480 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6069 ; 1.498 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 6.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;37.029 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;18.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;18.985 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3395 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2049 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2947 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2948 ; 0.761 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4581 ; 1.216 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 2.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1484 ; 3.144 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 143 REMARK 3 RESIDUE RANGE : C 144 C 146 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5740 44.7560 -2.3340 REMARK 3 T TENSOR REMARK 3 T11: -0.1625 T22: -0.0555 REMARK 3 T33: -0.1068 T12: -0.0173 REMARK 3 T13: 0.0427 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 2.0095 L22: 3.3861 REMARK 3 L33: 2.3547 L12: -1.1787 REMARK 3 L13: 0.3059 L23: 0.5258 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.2789 S13: -0.1275 REMARK 3 S21: -0.2419 S22: 0.0277 S23: -0.1022 REMARK 3 S31: 0.0150 S32: 0.3417 S33: -0.0997 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 140 REMARK 3 RESIDUE RANGE : D 141 D 147 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0940 31.9580 -29.4620 REMARK 3 T TENSOR REMARK 3 T11: -0.1459 T22: -0.0443 REMARK 3 T33: -0.1149 T12: 0.0548 REMARK 3 T13: 0.0305 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.4341 L22: 1.7994 REMARK 3 L33: 5.4059 L12: -0.3664 REMARK 3 L13: 0.6674 L23: -0.4019 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: -0.4918 S13: 0.0082 REMARK 3 S21: 0.1986 S22: 0.1688 S23: 0.0895 REMARK 3 S31: 0.5398 S32: 0.0284 S33: -0.0454 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 138 REMARK 3 RESIDUE RANGE : A 144 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8090 48.4930 -44.0290 REMARK 3 T TENSOR REMARK 3 T11: -0.2378 T22: -0.1646 REMARK 3 T33: -0.0669 T12: -0.0085 REMARK 3 T13: 0.0337 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 3.2961 L22: 1.7902 REMARK 3 L33: 2.1644 L12: -1.0092 REMARK 3 L13: -0.3051 L23: -0.5608 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.1836 S13: 0.3268 REMARK 3 S21: 0.0524 S22: 0.1197 S23: 0.1573 REMARK 3 S31: -0.3009 S32: -0.0667 S33: -0.1473 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 138 REMARK 3 RESIDUE RANGE : B 144 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4220 64.2380 -16.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: -0.0712 REMARK 3 T33: -0.0412 T12: 0.0131 REMARK 3 T13: -0.0369 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.3389 L22: 2.7319 REMARK 3 L33: 1.8341 L12: 0.2671 REMARK 3 L13: 0.0563 L23: -0.9361 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: -0.1729 S13: -0.1250 REMARK 3 S21: -0.3941 S22: -0.0302 S23: 0.2953 REMARK 3 S31: -0.0966 S32: 0.0491 S33: -0.0030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M DI-AMMONIUM HYDROGEN CITRATE, 20% REMARK 280 PEG3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.92600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.05950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.47300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.05950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.92600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.47300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY UNKNOWN. REMARK 300 THE ASSEMBLY SHOWN IN REMARK 350 IS PREDICTED BY THE REMARK 300 ANALYSIS OF PROTEIN INTERFACES BASED ON THIS CRYSTAL REMARK 300 STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 139 REMARK 465 ASP A 140 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 141 REMARK 465 VAL B 142 REMARK 465 PHE B 143 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 SER C 139 REMARK 465 ASP C 140 REMARK 465 LEU C 141 REMARK 465 VAL C 142 REMARK 465 PHE C 143 REMARK 465 SER C 147 REMARK 465 GLY D -1 REMARK 465 HIS D 0 REMARK 465 MSE D 1 REMARK 465 ASP D 2 REMARK 465 SER D 139 REMARK 465 ASP D 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 47 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 23.51 -148.47 REMARK 500 PRO A 62 -11.46 -47.64 REMARK 500 SER A 75 1.50 82.55 REMARK 500 ASP A 136 -61.65 -100.50 REMARK 500 VAL A 142 -122.15 47.86 REMARK 500 PRO B 62 -70.30 -27.37 REMARK 500 MSE B 138 -158.97 -69.92 REMARK 500 ARG C 7 35.54 -94.13 REMARK 500 ASP C 45 27.74 -149.74 REMARK 500 SER C 75 -8.43 81.42 REMARK 500 ARG D 7 38.63 -89.68 REMARK 500 SER D 75 -1.24 74.28 REMARK 500 VAL D 142 -77.82 -127.39 REMARK 500 PHE D 143 80.29 19.50 REMARK 500 SER D 144 46.42 -103.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 139 ASP B 140 149.69 REMARK 500 VAL D 142 PHE D 143 -146.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7345 RELATED DB: TARGETDB DBREF 2PQQ A 1 145 UNP Q9XA42 Q9XA42_STRCO 1 145 DBREF 2PQQ B 1 145 UNP Q9XA42 Q9XA42_STRCO 1 145 DBREF 2PQQ C 1 145 UNP Q9XA42 Q9XA42_STRCO 1 145 DBREF 2PQQ D 1 145 UNP Q9XA42 Q9XA42_STRCO 1 145 SEQADV 2PQQ GLY A -1 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ HIS A 0 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ MSE A 1 UNP Q9XA42 MET 1 MODIFIED RESIDUE SEQADV 2PQQ MSE A 26 UNP Q9XA42 MET 26 MODIFIED RESIDUE SEQADV 2PQQ MSE A 68 UNP Q9XA42 MET 68 MODIFIED RESIDUE SEQADV 2PQQ MSE A 138 UNP Q9XA42 MET 138 MODIFIED RESIDUE SEQADV 2PQQ GLY A 146 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ SER A 147 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ GLY B -1 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ HIS B 0 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ MSE B 1 UNP Q9XA42 MET 1 MODIFIED RESIDUE SEQADV 2PQQ MSE B 26 UNP Q9XA42 MET 26 MODIFIED RESIDUE SEQADV 2PQQ MSE B 68 UNP Q9XA42 MET 68 MODIFIED RESIDUE SEQADV 2PQQ MSE B 138 UNP Q9XA42 MET 138 MODIFIED RESIDUE SEQADV 2PQQ GLY B 146 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ SER B 147 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ GLY C -1 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ HIS C 0 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ MSE C 1 UNP Q9XA42 MET 1 MODIFIED RESIDUE SEQADV 2PQQ MSE C 26 UNP Q9XA42 MET 26 MODIFIED RESIDUE SEQADV 2PQQ MSE C 68 UNP Q9XA42 MET 68 MODIFIED RESIDUE SEQADV 2PQQ MSE C 138 UNP Q9XA42 MET 138 MODIFIED RESIDUE SEQADV 2PQQ GLY C 146 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ SER C 147 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ GLY D -1 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ HIS D 0 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ MSE D 1 UNP Q9XA42 MET 1 MODIFIED RESIDUE SEQADV 2PQQ MSE D 26 UNP Q9XA42 MET 26 MODIFIED RESIDUE SEQADV 2PQQ MSE D 68 UNP Q9XA42 MET 68 MODIFIED RESIDUE SEQADV 2PQQ MSE D 138 UNP Q9XA42 MET 138 MODIFIED RESIDUE SEQADV 2PQQ GLY D 146 UNP Q9XA42 CLONING ARTIFACT SEQADV 2PQQ SER D 147 UNP Q9XA42 CLONING ARTIFACT SEQRES 1 A 149 GLY HIS MSE ASP ASP VAL LEU ARG ARG ASN PRO LEU PHE SEQRES 2 A 149 ALA ALA LEU ASP ASP GLU GLN SER ALA GLU LEU ARG ALA SEQRES 3 A 149 SER MSE SER GLU VAL THR LEU ALA ARG GLY ASP THR LEU SEQRES 4 A 149 PHE HIS GLU GLY ASP PRO GLY ASP ARG LEU TYR VAL VAL SEQRES 5 A 149 THR GLU GLY LYS VAL LYS LEU HIS ARG THR SER PRO ASP SEQRES 6 A 149 GLY ARG GLU ASN MSE LEU ALA VAL VAL GLY PRO SER GLU SEQRES 7 A 149 LEU ILE GLY GLU LEU SER LEU PHE ASP PRO GLY PRO ARG SEQRES 8 A 149 THR ALA THR GLY THR ALA LEU THR GLU VAL LYS LEU LEU SEQRES 9 A 149 ALA LEU GLY HIS GLY ASP LEU GLN PRO TRP LEU ASN VAL SEQRES 10 A 149 ARG PRO GLU VAL ALA THR ALA LEU LEU ARG ALA VAL ALA SEQRES 11 A 149 ARG ARG LEU ARG LYS THR ASN ASP ALA MSE SER ASP LEU SEQRES 12 A 149 VAL PHE SER ASP GLY SER SEQRES 1 B 149 GLY HIS MSE ASP ASP VAL LEU ARG ARG ASN PRO LEU PHE SEQRES 2 B 149 ALA ALA LEU ASP ASP GLU GLN SER ALA GLU LEU ARG ALA SEQRES 3 B 149 SER MSE SER GLU VAL THR LEU ALA ARG GLY ASP THR LEU SEQRES 4 B 149 PHE HIS GLU GLY ASP PRO GLY ASP ARG LEU TYR VAL VAL SEQRES 5 B 149 THR GLU GLY LYS VAL LYS LEU HIS ARG THR SER PRO ASP SEQRES 6 B 149 GLY ARG GLU ASN MSE LEU ALA VAL VAL GLY PRO SER GLU SEQRES 7 B 149 LEU ILE GLY GLU LEU SER LEU PHE ASP PRO GLY PRO ARG SEQRES 8 B 149 THR ALA THR GLY THR ALA LEU THR GLU VAL LYS LEU LEU SEQRES 9 B 149 ALA LEU GLY HIS GLY ASP LEU GLN PRO TRP LEU ASN VAL SEQRES 10 B 149 ARG PRO GLU VAL ALA THR ALA LEU LEU ARG ALA VAL ALA SEQRES 11 B 149 ARG ARG LEU ARG LYS THR ASN ASP ALA MSE SER ASP LEU SEQRES 12 B 149 VAL PHE SER ASP GLY SER SEQRES 1 C 149 GLY HIS MSE ASP ASP VAL LEU ARG ARG ASN PRO LEU PHE SEQRES 2 C 149 ALA ALA LEU ASP ASP GLU GLN SER ALA GLU LEU ARG ALA SEQRES 3 C 149 SER MSE SER GLU VAL THR LEU ALA ARG GLY ASP THR LEU SEQRES 4 C 149 PHE HIS GLU GLY ASP PRO GLY ASP ARG LEU TYR VAL VAL SEQRES 5 C 149 THR GLU GLY LYS VAL LYS LEU HIS ARG THR SER PRO ASP SEQRES 6 C 149 GLY ARG GLU ASN MSE LEU ALA VAL VAL GLY PRO SER GLU SEQRES 7 C 149 LEU ILE GLY GLU LEU SER LEU PHE ASP PRO GLY PRO ARG SEQRES 8 C 149 THR ALA THR GLY THR ALA LEU THR GLU VAL LYS LEU LEU SEQRES 9 C 149 ALA LEU GLY HIS GLY ASP LEU GLN PRO TRP LEU ASN VAL SEQRES 10 C 149 ARG PRO GLU VAL ALA THR ALA LEU LEU ARG ALA VAL ALA SEQRES 11 C 149 ARG ARG LEU ARG LYS THR ASN ASP ALA MSE SER ASP LEU SEQRES 12 C 149 VAL PHE SER ASP GLY SER SEQRES 1 D 149 GLY HIS MSE ASP ASP VAL LEU ARG ARG ASN PRO LEU PHE SEQRES 2 D 149 ALA ALA LEU ASP ASP GLU GLN SER ALA GLU LEU ARG ALA SEQRES 3 D 149 SER MSE SER GLU VAL THR LEU ALA ARG GLY ASP THR LEU SEQRES 4 D 149 PHE HIS GLU GLY ASP PRO GLY ASP ARG LEU TYR VAL VAL SEQRES 5 D 149 THR GLU GLY LYS VAL LYS LEU HIS ARG THR SER PRO ASP SEQRES 6 D 149 GLY ARG GLU ASN MSE LEU ALA VAL VAL GLY PRO SER GLU SEQRES 7 D 149 LEU ILE GLY GLU LEU SER LEU PHE ASP PRO GLY PRO ARG SEQRES 8 D 149 THR ALA THR GLY THR ALA LEU THR GLU VAL LYS LEU LEU SEQRES 9 D 149 ALA LEU GLY HIS GLY ASP LEU GLN PRO TRP LEU ASN VAL SEQRES 10 D 149 ARG PRO GLU VAL ALA THR ALA LEU LEU ARG ALA VAL ALA SEQRES 11 D 149 ARG ARG LEU ARG LYS THR ASN ASP ALA MSE SER ASP LEU SEQRES 12 D 149 VAL PHE SER ASP GLY SER MODRES 2PQQ MSE A 1 MET SELENOMETHIONINE MODRES 2PQQ MSE A 26 MET SELENOMETHIONINE MODRES 2PQQ MSE A 68 MET SELENOMETHIONINE MODRES 2PQQ MSE A 138 MET SELENOMETHIONINE MODRES 2PQQ MSE B 1 MET SELENOMETHIONINE MODRES 2PQQ MSE B 26 MET SELENOMETHIONINE MODRES 2PQQ MSE B 68 MET SELENOMETHIONINE MODRES 2PQQ MSE B 138 MET SELENOMETHIONINE MODRES 2PQQ MSE C 26 MET SELENOMETHIONINE MODRES 2PQQ MSE C 68 MET SELENOMETHIONINE MODRES 2PQQ MSE C 138 MET SELENOMETHIONINE MODRES 2PQQ MSE D 26 MET SELENOMETHIONINE MODRES 2PQQ MSE D 68 MET SELENOMETHIONINE MODRES 2PQQ MSE D 138 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 68 8 HET MSE A 138 8 HET MSE B 1 8 HET MSE B 26 8 HET MSE B 68 8 HET MSE B 138 8 HET MSE C 26 8 HET MSE C 68 8 HET MSE C 138 8 HET MSE D 26 8 HET MSE D 68 8 HET MSE D 138 8 HET FMT A 301 3 HET FMT C 302 3 HET FMT D 303 3 HETNAM MSE SELENOMETHIONINE HETNAM FMT FORMIC ACID FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 5 FMT 3(C H2 O2) FORMUL 8 HOH *251(H2 O) HELIX 1 1 GLY A -1 ARG A 6 5 8 HELIX 2 2 ASP A 15 MSE A 26 1 12 HELIX 3 3 GLY A 79 PHE A 84 5 6 HELIX 4 4 ASP A 108 ARG A 116 1 9 HELIX 5 5 PRO A 117 ASP A 136 1 20 HELIX 6 6 ASP B 15 MSE B 26 1 12 HELIX 7 7 GLY B 79 LEU B 83 5 5 HELIX 8 8 HIS B 106 ARG B 116 1 11 HELIX 9 9 GLU B 118 MSE B 138 1 21 HELIX 10 10 ASP C 15 MSE C 26 1 12 HELIX 11 11 GLY C 79 ASP C 85 1 7 HELIX 12 12 HIS C 106 ASN C 114 1 9 HELIX 13 13 ARG C 116 MSE C 138 1 23 HELIX 14 14 ASP D 15 MSE D 26 1 12 HELIX 15 15 GLY D 79 PHE D 84 5 6 HELIX 16 16 ASP D 108 ARG D 116 1 9 HELIX 17 17 ARG D 116 MSE D 138 1 23 SHEET 1 A 4 SER A 27 LEU A 31 0 SHEET 2 A 4 VAL A 99 GLY A 105 -1 O VAL A 99 N LEU A 31 SHEET 3 A 4 ARG A 46 GLU A 52 -1 N THR A 51 O LYS A 100 SHEET 4 A 4 LEU A 77 ILE A 78 -1 O ILE A 78 N TYR A 48 SHEET 1 B 4 THR A 36 PHE A 38 0 SHEET 2 B 4 THR A 92 ALA A 95 -1 O GLY A 93 N LEU A 37 SHEET 3 B 4 VAL A 55 THR A 60 -1 N HIS A 58 O THR A 92 SHEET 4 B 4 GLU A 66 VAL A 72 -1 O ASN A 67 N ARG A 59 SHEET 1 C 2 PRO A 43 GLY A 44 0 SHEET 2 C 2 GLY A 87 PRO A 88 -1 O GLY A 87 N GLY A 44 SHEET 1 D 4 SER B 27 LEU B 31 0 SHEET 2 D 4 VAL B 99 GLY B 105 -1 O LEU B 101 N VAL B 29 SHEET 3 D 4 ARG B 46 GLU B 52 -1 N THR B 51 O LYS B 100 SHEET 4 D 4 LEU B 77 ILE B 78 -1 O ILE B 78 N TYR B 48 SHEET 1 E 4 THR B 36 PHE B 38 0 SHEET 2 E 4 THR B 92 ALA B 95 -1 O GLY B 93 N LEU B 37 SHEET 3 E 4 VAL B 55 SER B 61 -1 N LYS B 56 O THR B 94 SHEET 4 E 4 ARG B 65 VAL B 72 -1 O ALA B 70 N LEU B 57 SHEET 1 F 2 PRO B 43 GLY B 44 0 SHEET 2 F 2 GLY B 87 PRO B 88 -1 O GLY B 87 N GLY B 44 SHEET 1 G 4 SER C 27 LEU C 31 0 SHEET 2 G 4 VAL C 99 GLY C 105 -1 O VAL C 99 N LEU C 31 SHEET 3 G 4 ARG C 46 GLU C 52 -1 N THR C 51 O LYS C 100 SHEET 4 G 4 LEU C 77 ILE C 78 -1 O ILE C 78 N TYR C 48 SHEET 1 H 4 THR C 36 PHE C 38 0 SHEET 2 H 4 THR C 92 ALA C 95 -1 O GLY C 93 N LEU C 37 SHEET 3 H 4 VAL C 55 THR C 60 -1 N HIS C 58 O THR C 92 SHEET 4 H 4 GLU C 66 VAL C 72 -1 O VAL C 72 N VAL C 55 SHEET 1 I 2 PRO C 43 GLY C 44 0 SHEET 2 I 2 GLY C 87 PRO C 88 -1 O GLY C 87 N GLY C 44 SHEET 1 J 4 SER D 27 LEU D 31 0 SHEET 2 J 4 VAL D 99 GLY D 105 -1 O VAL D 99 N LEU D 31 SHEET 3 J 4 ARG D 46 GLU D 52 -1 N THR D 51 O LYS D 100 SHEET 4 J 4 LEU D 77 ILE D 78 -1 O ILE D 78 N TYR D 48 SHEET 1 K 4 THR D 36 PHE D 38 0 SHEET 2 K 4 THR D 92 ALA D 95 -1 O GLY D 93 N LEU D 37 SHEET 3 K 4 VAL D 55 THR D 60 -1 N LYS D 56 O THR D 94 SHEET 4 K 4 GLU D 66 VAL D 72 -1 O ASN D 67 N ARG D 59 SHEET 1 L 2 PRO D 43 GLY D 44 0 SHEET 2 L 2 GLY D 87 PRO D 88 -1 O GLY D 87 N GLY D 44 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C SER A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N SER A 27 1555 1555 1.33 LINK C ASN A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N LEU A 69 1555 1555 1.33 LINK C ALA A 137 N MSE A 138 1555 1555 1.33 LINK C MSE B 1 N ASP B 2 1555 1555 1.33 LINK C SER B 25 N MSE B 26 1555 1555 1.34 LINK C MSE B 26 N SER B 27 1555 1555 1.33 LINK C ASN B 67 N MSE B 68 1555 1555 1.33 LINK C MSE B 68 N LEU B 69 1555 1555 1.32 LINK C ALA B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N SER B 139 1555 1555 1.34 LINK C SER C 25 N MSE C 26 1555 1555 1.33 LINK C MSE C 26 N SER C 27 1555 1555 1.34 LINK C ASN C 67 N MSE C 68 1555 1555 1.33 LINK C MSE C 68 N LEU C 69 1555 1555 1.33 LINK C ALA C 137 N MSE C 138 1555 1555 1.34 LINK C SER D 25 N MSE D 26 1555 1555 1.33 LINK C MSE D 26 N SER D 27 1555 1555 1.33 LINK C ASN D 67 N MSE D 68 1555 1555 1.33 LINK C MSE D 68 N LEU D 69 1555 1555 1.33 LINK C ALA D 137 N MSE D 138 1555 1555 1.33 SITE 1 AC1 3 ASP A 2 ARG A 23 HOH A 358 SITE 1 AC2 4 GLN C 18 ARG C 116 PRO C 117 GLU C 118 SITE 1 AC3 6 PHE D 38 PRO D 43 TYR D 48 ARG D 89 SITE 2 AC3 6 HOH D 321 HOH D 343 CRYST1 39.852 100.946 144.119 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006939 0.00000