HEADER APOPTOSIS 02-MAY-07 2PQR TITLE CRYSTAL STRUCTURE OF YEAST FIS1 COMPLEXED WITH A FRAGMENT OF YEAST TITLE 2 CAF4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIA FISSION 1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOPLASMIC PORTION; COMPND 5 SYNONYM: MITOCHONDRIAL DIVISION PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: WD REPEAT PROTEIN YKR036C; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: N-TERMINAL DOMAIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: FIS1, MDV2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBB75; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: CAF4; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TPR DOMAIN, PROTEIN-PROTEIN COMPLEX, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,D.C.CHAN REVDAT 5 30-AUG-23 2PQR 1 REMARK SEQADV REVDAT 4 18-OCT-17 2PQR 1 REMARK REVDAT 3 13-JUL-11 2PQR 1 VERSN REVDAT 2 27-JAN-09 2PQR 1 JRNL VERSN REVDAT 1 06-NOV-07 2PQR 0 JRNL AUTH Y.ZHANG,D.C.CHAN JRNL TITL STRUCTURAL BASIS FOR RECRUITMENT OF MITOCHONDRIAL FISSION JRNL TITL 2 COMPLEXES BY FIS1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 18526 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17998537 JRNL DOI 10.1073/PNAS.0706441104 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 27376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2574 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3487 ; 1.496 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 6.250 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;37.780 ;23.730 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;16.181 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;24.706 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1951 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1230 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1795 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 154 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1598 ; 0.824 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2490 ; 1.226 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1143 ; 2.022 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 994 ; 2.978 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0260 -2.0900 27.2830 REMARK 3 T TENSOR REMARK 3 T11: -0.2447 T22: -0.0044 REMARK 3 T33: 0.2526 T12: -0.0289 REMARK 3 T13: -0.0105 T23: 0.1074 REMARK 3 L TENSOR REMARK 3 L11: 4.2225 L22: 5.8533 REMARK 3 L33: 9.8215 L12: -3.5949 REMARK 3 L13: -1.4810 L23: 1.6750 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.5369 S13: -0.8510 REMARK 3 S21: 0.3633 S22: 0.9540 S23: -0.3992 REMARK 3 S31: 0.9740 S32: 0.7073 S33: -0.9275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1500 3.8010 19.4470 REMARK 3 T TENSOR REMARK 3 T11: -0.1624 T22: -0.0355 REMARK 3 T33: 0.0938 T12: 0.0031 REMARK 3 T13: -0.0212 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 7.3532 L22: 2.5426 REMARK 3 L33: 2.8858 L12: 3.2262 REMARK 3 L13: 0.6742 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.2939 S13: -0.0484 REMARK 3 S21: -0.1389 S22: 0.3498 S23: 0.3857 REMARK 3 S31: 0.0380 S32: -0.1608 S33: -0.3426 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 54.3150 15.9300 24.6610 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: -0.0390 REMARK 3 T33: -0.0542 T12: 0.0015 REMARK 3 T13: 0.0396 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.0283 L22: 2.1996 REMARK 3 L33: 3.1219 L12: 0.8370 REMARK 3 L13: -0.7563 L23: 0.4380 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.1241 S13: 0.1387 REMARK 3 S21: 0.2100 S22: -0.0708 S23: 0.1402 REMARK 3 S31: -0.1276 S32: 0.0274 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 61.4370 18.4020 13.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: -0.0224 REMARK 3 T33: -0.0780 T12: -0.0217 REMARK 3 T13: 0.0265 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.1402 L22: 2.5085 REMARK 3 L33: 3.6518 L12: 0.5981 REMARK 3 L13: -0.0785 L23: -0.4519 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.1018 S13: 0.0624 REMARK 3 S21: 0.0173 S22: 0.0002 S23: -0.1036 REMARK 3 S31: -0.2392 S32: 0.1605 S33: 0.0290 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 59.7130 30.7570 6.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: -0.0415 REMARK 3 T33: -0.0550 T12: -0.0374 REMARK 3 T13: 0.0547 T23: 0.0906 REMARK 3 L TENSOR REMARK 3 L11: 7.9567 L22: 5.3728 REMARK 3 L33: 9.4165 L12: 0.7866 REMARK 3 L13: 3.7589 L23: -1.3911 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.1008 S13: 0.4741 REMARK 3 S21: 0.1922 S22: 0.0121 S23: -0.0343 REMARK 3 S31: -0.5451 S32: -0.1010 S33: 0.0580 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 99 C 122 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0390 2.8670 9.1830 REMARK 3 T TENSOR REMARK 3 T11: -0.2103 T22: -0.0124 REMARK 3 T33: 0.2903 T12: -0.0191 REMARK 3 T13: -0.1760 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 31.0793 L22: 7.0797 REMARK 3 L33: 17.1639 L12: -0.7670 REMARK 3 L13: -15.3006 L23: 2.8847 REMARK 3 S TENSOR REMARK 3 S11: -0.7506 S12: 2.3806 S13: -2.2864 REMARK 3 S21: -0.5870 S22: -0.2291 S23: -0.4187 REMARK 3 S31: -0.0333 S32: -0.2171 S33: 0.9797 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 123 C 140 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8660 5.6610 25.6970 REMARK 3 T TENSOR REMARK 3 T11: -0.0206 T22: -0.0544 REMARK 3 T33: 0.0649 T12: -0.0199 REMARK 3 T13: 0.0828 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 14.2571 L22: 4.4549 REMARK 3 L33: 15.2065 L12: 1.8680 REMARK 3 L13: 9.4259 L23: 0.3553 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: -0.5040 S13: -0.6087 REMARK 3 S21: 0.5562 S22: 0.0705 S23: 0.3013 REMARK 3 S31: -0.4260 S32: -0.2596 S33: -0.1540 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 96 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): 69.1730 13.7390 10.6310 REMARK 3 T TENSOR REMARK 3 T11: -0.0219 T22: 0.0541 REMARK 3 T33: -0.0223 T12: 0.0018 REMARK 3 T13: 0.0336 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 6.6563 L22: 4.4121 REMARK 3 L33: 13.6059 L12: 2.2133 REMARK 3 L13: 7.4435 L23: 3.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.1773 S12: 0.3533 S13: -0.0503 REMARK 3 S21: -0.0673 S22: 0.1932 S23: -0.5674 REMARK 3 S31: -0.3397 S32: 0.6757 S33: -0.0159 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 116 D 123 REMARK 3 ORIGIN FOR THE GROUP (A): 45.9170 12.5800 2.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.6104 T22: 0.9453 REMARK 3 T33: 0.0510 T12: -0.0091 REMARK 3 T13: -0.1190 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 6.7116 L22: 34.9002 REMARK 3 L33: 43.3337 L12: -2.4964 REMARK 3 L13: -16.0442 L23: -7.0388 REMARK 3 S TENSOR REMARK 3 S11: -0.7062 S12: 2.1719 S13: -0.2413 REMARK 3 S21: -2.9048 S22: 1.0508 S23: -0.1163 REMARK 3 S31: 1.7198 S32: -1.9694 S33: -0.3446 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 124 D 138 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4120 16.6210 23.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0093 T22: -0.0596 REMARK 3 T33: -0.0091 T12: 0.0146 REMARK 3 T13: 0.0804 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 4.8635 L22: 6.9696 REMARK 3 L33: 12.4402 L12: -1.0727 REMARK 3 L13: -4.4931 L23: -2.7628 REMARK 3 S TENSOR REMARK 3 S11: 0.1434 S12: -0.0242 S13: 0.2719 REMARK 3 S21: 0.5895 S22: 0.0701 S23: 0.4630 REMARK 3 S31: -0.3173 S32: -0.5261 S33: -0.2135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90272 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL, ASYMETRIC REMARK 200 CUT 12.2 DEGS REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; SINGLE REMARK 200 CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 2PQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.2 M NAH2PO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.47400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS CONSISTED OF ONE FIS1 AND ONE REMARK 300 CAF4 FRAGMENT. THERE ARE TWO BIOLOGICAL UNITS IN ONE ASYMMETRIC REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 103 REMARK 465 PHE A 104 REMARK 465 GLU A 105 REMARK 465 HIS A 106 REMARK 465 GLU A 107 REMARK 465 ARG A 108 REMARK 465 ASN A 109 REMARK 465 ASN A 110 REMARK 465 LYS A 111 REMARK 465 GLN A 112 REMARK 465 VAL A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 115 REMARK 465 LEU A 116 REMARK 465 LYS A 117 REMARK 465 SER A 118 REMARK 465 MET A 119 REMARK 465 VAL A 120 REMARK 465 GLU A 121 REMARK 465 ASP A 122 REMARK 465 LYS A 123 REMARK 465 ILE A 124 REMARK 465 GLN A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 THR A 128 REMARK 465 LEU A 129 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 LEU B 129 REMARK 465 GLY C 77 REMARK 465 SER C 78 REMARK 465 HIS C 79 REMARK 465 MET C 80 REMARK 465 GLN C 81 REMARK 465 LYS C 82 REMARK 465 GLY C 83 REMARK 465 GLN C 84 REMARK 465 VAL C 85 REMARK 465 GLY C 86 REMARK 465 ILE C 87 REMARK 465 PHE C 88 REMARK 465 SER C 89 REMARK 465 PHE C 90 REMARK 465 GLN C 91 REMARK 465 ASN C 92 REMARK 465 ASN C 93 REMARK 465 TYR C 94 REMARK 465 ALA C 95 REMARK 465 ASP C 96 REMARK 465 ASN C 116 REMARK 465 GLY C 117 REMARK 465 ALA C 118 REMARK 465 ALA C 119 REMARK 465 GLY D 77 REMARK 465 SER D 78 REMARK 465 HIS D 79 REMARK 465 MET D 80 REMARK 465 GLN D 81 REMARK 465 LYS D 82 REMARK 465 GLY D 83 REMARK 465 GLN D 84 REMARK 465 VAL D 85 REMARK 465 GLY D 86 REMARK 465 ILE D 87 REMARK 465 PHE D 88 REMARK 465 SER D 89 REMARK 465 PHE D 90 REMARK 465 GLN D 91 REMARK 465 ASN D 92 REMARK 465 ASN D 93 REMARK 465 GLN D 139 REMARK 465 ARG D 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 122 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 11 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 11 CB LYS A 11 CG -0.340 REMARK 500 GLU B 71 CB GLU B 71 CG -0.115 REMARK 500 ARG C 111 NE ARG C 111 CZ 0.131 REMARK 500 ARG C 111 CZ ARG C 111 NH1 0.254 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 11 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG C 111 CD - NE - CZ ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG C 111 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG C 111 NE - CZ - NH2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP D 96 N - CA - C ANGL. DEV. = -24.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 6 93.13 -68.34 REMARK 500 SER A 52 157.04 -49.10 REMARK 500 TYR C 112 74.90 -117.21 REMARK 500 LYS C 121 15.31 52.14 REMARK 500 ASN C 122 18.98 -149.38 REMARK 500 ALA D 95 -174.83 171.78 REMARK 500 ALA D 118 -59.42 104.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 95 ASP D 96 -66.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PQN RELATED DB: PDB REMARK 900 YEAST FIS1 COMPLEXED WITH A FRAGMENT OF YEAST MDV1 DBREF 2PQR A 1 129 UNP P40515 FIS1_YEAST 1 129 DBREF 2PQR B 1 129 UNP P40515 FIS1_YEAST 1 129 DBREF 2PQR C 81 140 UNP P36130 YK16_YEAST 81 140 DBREF 2PQR D 81 140 UNP P36130 YK16_YEAST 81 140 SEQADV 2PQR GLY C 77 UNP P36130 EXPRESSION TAG SEQADV 2PQR SER C 78 UNP P36130 EXPRESSION TAG SEQADV 2PQR HIS C 79 UNP P36130 EXPRESSION TAG SEQADV 2PQR MET C 80 UNP P36130 EXPRESSION TAG SEQADV 2PQR GLN C 110 UNP P36130 HIS 110 VARIANT SEQADV 2PQR ARG C 111 UNP P36130 GLY 111 VARIANT SEQADV 2PQR GLY D 77 UNP P36130 EXPRESSION TAG SEQADV 2PQR SER D 78 UNP P36130 EXPRESSION TAG SEQADV 2PQR HIS D 79 UNP P36130 EXPRESSION TAG SEQADV 2PQR MET D 80 UNP P36130 EXPRESSION TAG SEQADV 2PQR GLN D 110 UNP P36130 HIS 110 VARIANT SEQADV 2PQR ARG D 111 UNP P36130 GLY 111 VARIANT SEQRES 1 A 129 MET THR LYS VAL ASP PHE TRP PRO THR LEU LYS ASP ALA SEQRES 2 A 129 TYR GLU PRO LEU TYR PRO GLN GLN LEU GLU ILE LEU ARG SEQRES 3 A 129 GLN GLN VAL VAL SER GLU GLY GLY PRO THR ALA THR ILE SEQRES 4 A 129 GLN SER ARG PHE ASN TYR ALA TRP GLY LEU ILE LYS SER SEQRES 5 A 129 THR ASP VAL ASN ASP GLU ARG LEU GLY VAL LYS ILE LEU SEQRES 6 A 129 THR ASP ILE TYR LYS GLU ALA GLU SER ARG ARG ARG GLU SEQRES 7 A 129 CYS LEU TYR TYR LEU THR ILE GLY CYS TYR LYS LEU GLY SEQRES 8 A 129 GLU TYR SER MET ALA LYS ARG TYR VAL ASP THR LEU PHE SEQRES 9 A 129 GLU HIS GLU ARG ASN ASN LYS GLN VAL GLY ALA LEU LYS SEQRES 10 A 129 SER MET VAL GLU ASP LYS ILE GLN LYS GLU THR LEU SEQRES 1 B 129 MET THR LYS VAL ASP PHE TRP PRO THR LEU LYS ASP ALA SEQRES 2 B 129 TYR GLU PRO LEU TYR PRO GLN GLN LEU GLU ILE LEU ARG SEQRES 3 B 129 GLN GLN VAL VAL SER GLU GLY GLY PRO THR ALA THR ILE SEQRES 4 B 129 GLN SER ARG PHE ASN TYR ALA TRP GLY LEU ILE LYS SER SEQRES 5 B 129 THR ASP VAL ASN ASP GLU ARG LEU GLY VAL LYS ILE LEU SEQRES 6 B 129 THR ASP ILE TYR LYS GLU ALA GLU SER ARG ARG ARG GLU SEQRES 7 B 129 CYS LEU TYR TYR LEU THR ILE GLY CYS TYR LYS LEU GLY SEQRES 8 B 129 GLU TYR SER MET ALA LYS ARG TYR VAL ASP THR LEU PHE SEQRES 9 B 129 GLU HIS GLU ARG ASN ASN LYS GLN VAL GLY ALA LEU LYS SEQRES 10 B 129 SER MET VAL GLU ASP LYS ILE GLN LYS GLU THR LEU SEQRES 1 C 64 GLY SER HIS MET GLN LYS GLY GLN VAL GLY ILE PHE SER SEQRES 2 C 64 PHE GLN ASN ASN TYR ALA ASP SER ALA THR THR PHE ARG SEQRES 3 C 64 ILE LEU ALA HIS LEU ASP GLU GLN ARG TYR PRO LEU PRO SEQRES 4 C 64 ASN GLY ALA ALA GLU LYS ASN LEU PRO SER LEU PHE GLU SEQRES 5 C 64 GLY PHE LYS ALA THR VAL SER ILE ILE GLN GLN ARG SEQRES 1 D 64 GLY SER HIS MET GLN LYS GLY GLN VAL GLY ILE PHE SER SEQRES 2 D 64 PHE GLN ASN ASN TYR ALA ASP SER ALA THR THR PHE ARG SEQRES 3 D 64 ILE LEU ALA HIS LEU ASP GLU GLN ARG TYR PRO LEU PRO SEQRES 4 D 64 ASN GLY ALA ALA GLU LYS ASN LEU PRO SER LEU PHE GLU SEQRES 5 D 64 GLY PHE LYS ALA THR VAL SER ILE ILE GLN GLN ARG HET AU B 301 2 HET AU D 302 1 HETNAM AU GOLD ION FORMUL 5 AU 2(AU 1+) FORMUL 7 HOH *141(H2 O) HELIX 1 1 THR A 9 TYR A 14 1 6 HELIX 2 2 TYR A 18 GLY A 33 1 16 HELIX 3 3 GLY A 34 ALA A 37 5 4 HELIX 4 4 THR A 38 SER A 52 1 15 HELIX 5 5 ASP A 54 ALA A 72 1 19 HELIX 6 6 ARG A 75 LEU A 90 1 16 HELIX 7 7 GLU A 92 THR A 102 1 11 HELIX 8 8 THR B 9 TYR B 14 1 6 HELIX 9 9 TYR B 18 GLU B 32 1 15 HELIX 10 10 GLY B 33 ALA B 37 5 5 HELIX 11 11 THR B 38 SER B 52 1 15 HELIX 12 12 ASP B 54 ALA B 72 1 19 HELIX 13 13 ARG B 75 GLY B 91 1 17 HELIX 14 14 GLU B 92 GLU B 107 1 16 HELIX 15 15 ASN B 110 THR B 128 1 19 HELIX 16 16 ALA C 98 ALA C 105 1 8 HELIX 17 17 SER C 125 GLN C 138 1 14 HELIX 18 18 ASP D 96 ALA D 105 1 10 HELIX 19 19 SER D 125 GLN D 138 1 14 CISPEP 1 ASN D 116 GLY D 117 0 -0.73 CISPEP 2 ALA D 118 ALA D 119 0 -20.43 SITE 1 AC1 2 HOH B 303 HOH B 312 SITE 1 AC2 1 HOH B 382 CRYST1 60.408 46.948 64.468 90.00 99.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016554 0.000000 0.002684 0.00000 SCALE2 0.000000 0.021300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015714 0.00000